data_8X5M # _model_server_result.job_id C_a9MNh8i0M-d-RkPlB-Uw _model_server_result.datetime_utc '2024-11-26 23:28:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8x5m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8X5M # _exptl.entry_id 8X5M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8X5M _cell.length_a 77.17 _cell.length_b 128.405 _cell.length_c 82.905 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8X5M _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 115 A CYS 116 1_555 B C17 Y4O . A Y4O 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? covale ? covale2 A C ASP 161 A ASP 162 1_555 A N CSO 162 A CSO 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 A C CSO 162 A CSO 163 1_555 A N THR 163 A THR 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 152 n n C1 C2 GOL sing 153 n n C1 H11 GOL sing 154 n n C1 H12 GOL sing 155 n n O1 HO1 GOL sing 156 n n C2 O2 GOL sing 157 n n C2 C3 GOL sing 158 n n C2 H2 GOL sing 159 n n O2 HO2 GOL sing 160 n n C3 O3 GOL sing 161 n n C3 H31 GOL sing 162 n n C3 H32 GOL sing 163 n n O3 HO3 GOL sing 164 n n # _atom_sites.entry_id 8X5M _atom_sites.fract_transf_matrix[1][1] 0.012958 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y4O A 1 401 1 Y4O JI8 . C 3 GOL A 1 402 1 GOL GOL . D 3 GOL A 1 403 2 GOL GOL . E 4 EDO A 1 404 3 EDO EDO . F 5 HOH A 1 501 100 HOH HOH . F 5 HOH A 2 502 151 HOH HOH . F 5 HOH A 3 503 92 HOH HOH . F 5 HOH A 4 504 26 HOH HOH . F 5 HOH A 5 505 218 HOH HOH . F 5 HOH A 6 506 191 HOH HOH . F 5 HOH A 7 507 213 HOH HOH . F 5 HOH A 8 508 71 HOH HOH . F 5 HOH A 9 509 109 HOH HOH . F 5 HOH A 10 510 249 HOH HOH . F 5 HOH A 11 511 243 HOH HOH . F 5 HOH A 12 512 91 HOH HOH . F 5 HOH A 13 513 183 HOH HOH . F 5 HOH A 14 514 246 HOH HOH . F 5 HOH A 15 515 18 HOH HOH . F 5 HOH A 16 516 162 HOH HOH . F 5 HOH A 17 517 63 HOH HOH . F 5 HOH A 18 518 128 HOH HOH . F 5 HOH A 19 519 69 HOH HOH . F 5 HOH A 20 520 126 HOH HOH . F 5 HOH A 21 521 170 HOH HOH . F 5 HOH A 22 522 97 HOH HOH . F 5 HOH A 23 523 247 HOH HOH . F 5 HOH A 24 524 95 HOH HOH . F 5 HOH A 25 525 130 HOH HOH . F 5 HOH A 26 526 166 HOH HOH . F 5 HOH A 27 527 62 HOH HOH . F 5 HOH A 28 528 223 HOH HOH . F 5 HOH A 29 529 122 HOH HOH . F 5 HOH A 30 530 112 HOH HOH . F 5 HOH A 31 531 173 HOH HOH . F 5 HOH A 32 532 207 HOH HOH . F 5 HOH A 33 533 96 HOH HOH . F 5 HOH A 34 534 93 HOH HOH . F 5 HOH A 35 535 195 HOH HOH . F 5 HOH A 36 536 34 HOH HOH . F 5 HOH A 37 537 65 HOH HOH . F 5 HOH A 38 538 43 HOH HOH . F 5 HOH A 39 539 185 HOH HOH . F 5 HOH A 40 540 103 HOH HOH . F 5 HOH A 41 541 123 HOH HOH . F 5 HOH A 42 542 82 HOH HOH . F 5 HOH A 43 543 74 HOH HOH . F 5 HOH A 44 544 50 HOH HOH . F 5 HOH A 45 545 27 HOH HOH . F 5 HOH A 46 546 118 HOH HOH . F 5 HOH A 47 547 60 HOH HOH . F 5 HOH A 48 548 157 HOH HOH . F 5 HOH A 49 549 32 HOH HOH . F 5 HOH A 50 550 98 HOH HOH . F 5 HOH A 51 551 25 HOH HOH . F 5 HOH A 52 552 73 HOH HOH . F 5 HOH A 53 553 89 HOH HOH . F 5 HOH A 54 554 189 HOH HOH . F 5 HOH A 55 555 163 HOH HOH . F 5 HOH A 56 556 11 HOH HOH . F 5 HOH A 57 557 248 HOH HOH . F 5 HOH A 58 558 24 HOH HOH . F 5 HOH A 59 559 110 HOH HOH . F 5 HOH A 60 560 6 HOH HOH . F 5 HOH A 61 561 47 HOH HOH . F 5 HOH A 62 562 106 HOH HOH . F 5 HOH A 63 563 144 HOH HOH . F 5 HOH A 64 564 114 HOH HOH . F 5 HOH A 65 565 167 HOH HOH . F 5 HOH A 66 566 222 HOH HOH . F 5 HOH A 67 567 174 HOH HOH . F 5 HOH A 68 568 61 HOH HOH . F 5 HOH A 69 569 211 HOH HOH . F 5 HOH A 70 570 229 HOH HOH . F 5 HOH A 71 571 38 HOH HOH . F 5 HOH A 72 572 150 HOH HOH . F 5 HOH A 73 573 42 HOH HOH . F 5 HOH A 74 574 178 HOH HOH . F 5 HOH A 75 575 49 HOH HOH . F 5 HOH A 76 576 85 HOH HOH . F 5 HOH A 77 577 228 HOH HOH . F 5 HOH A 78 578 145 HOH HOH . F 5 HOH A 79 579 142 HOH HOH . F 5 HOH A 80 580 115 HOH HOH . F 5 HOH A 81 581 94 HOH HOH . F 5 HOH A 82 582 108 HOH HOH . F 5 HOH A 83 583 66 HOH HOH . F 5 HOH A 84 584 48 HOH HOH . F 5 HOH A 85 585 105 HOH HOH . F 5 HOH A 86 586 131 HOH HOH . F 5 HOH A 87 587 45 HOH HOH . F 5 HOH A 88 588 7 HOH HOH . F 5 HOH A 89 589 22 HOH HOH . F 5 HOH A 90 590 186 HOH HOH . F 5 HOH A 91 591 54 HOH HOH . F 5 HOH A 92 592 241 HOH HOH . F 5 HOH A 93 593 37 HOH HOH . F 5 HOH A 94 594 44 HOH HOH . F 5 HOH A 95 595 107 HOH HOH . F 5 HOH A 96 596 20 HOH HOH . F 5 HOH A 97 597 164 HOH HOH . F 5 HOH A 98 598 41 HOH HOH . F 5 HOH A 99 599 56 HOH HOH . F 5 HOH A 100 600 121 HOH HOH . F 5 HOH A 101 601 87 HOH HOH . F 5 HOH A 102 602 12 HOH HOH . F 5 HOH A 103 603 16 HOH HOH . F 5 HOH A 104 604 140 HOH HOH . F 5 HOH A 105 605 67 HOH HOH . F 5 HOH A 106 606 124 HOH HOH . F 5 HOH A 107 607 176 HOH HOH . F 5 HOH A 108 608 117 HOH HOH . F 5 HOH A 109 609 190 HOH HOH . F 5 HOH A 110 610 33 HOH HOH . F 5 HOH A 111 611 21 HOH HOH . F 5 HOH A 112 612 17 HOH HOH . F 5 HOH A 113 613 58 HOH HOH . F 5 HOH A 114 614 14 HOH HOH . F 5 HOH A 115 615 135 HOH HOH . F 5 HOH A 116 616 197 HOH HOH . F 5 HOH A 117 617 51 HOH HOH . F 5 HOH A 118 618 81 HOH HOH . F 5 HOH A 119 619 212 HOH HOH . F 5 HOH A 120 620 70 HOH HOH . F 5 HOH A 121 621 57 HOH HOH . F 5 HOH A 122 622 31 HOH HOH . F 5 HOH A 123 623 156 HOH HOH . F 5 HOH A 124 624 8 HOH HOH . F 5 HOH A 125 625 199 HOH HOH . F 5 HOH A 126 626 206 HOH HOH . F 5 HOH A 127 627 236 HOH HOH . F 5 HOH A 128 628 53 HOH HOH . F 5 HOH A 129 629 3 HOH HOH . F 5 HOH A 130 630 154 HOH HOH . F 5 HOH A 131 631 5 HOH HOH . F 5 HOH A 132 632 221 HOH HOH . F 5 HOH A 133 633 136 HOH HOH . F 5 HOH A 134 634 40 HOH HOH . F 5 HOH A 135 635 68 HOH HOH . F 5 HOH A 136 636 59 HOH HOH . F 5 HOH A 137 637 217 HOH HOH . F 5 HOH A 138 638 250 HOH HOH . F 5 HOH A 139 639 205 HOH HOH . F 5 HOH A 140 640 99 HOH HOH . F 5 HOH A 141 641 119 HOH HOH . F 5 HOH A 142 642 245 HOH HOH . F 5 HOH A 143 643 4 HOH HOH . F 5 HOH A 144 644 39 HOH HOH . F 5 HOH A 145 645 219 HOH HOH . F 5 HOH A 146 646 179 HOH HOH . F 5 HOH A 147 647 35 HOH HOH . F 5 HOH A 148 648 139 HOH HOH . F 5 HOH A 149 649 46 HOH HOH . F 5 HOH A 150 650 78 HOH HOH . F 5 HOH A 151 651 90 HOH HOH . F 5 HOH A 152 652 84 HOH HOH . F 5 HOH A 153 653 224 HOH HOH . F 5 HOH A 154 654 155 HOH HOH . F 5 HOH A 155 655 1 HOH HOH . F 5 HOH A 156 656 102 HOH HOH . F 5 HOH A 157 657 177 HOH HOH . F 5 HOH A 158 658 72 HOH HOH . F 5 HOH A 159 659 55 HOH HOH . F 5 HOH A 160 660 133 HOH HOH . F 5 HOH A 161 661 120 HOH HOH . F 5 HOH A 162 662 175 HOH HOH . F 5 HOH A 163 663 116 HOH HOH . F 5 HOH A 164 664 36 HOH HOH . F 5 HOH A 165 665 83 HOH HOH . F 5 HOH A 166 666 29 HOH HOH . F 5 HOH A 167 667 77 HOH HOH . F 5 HOH A 168 668 194 HOH HOH . F 5 HOH A 169 669 113 HOH HOH . F 5 HOH A 170 670 232 HOH HOH . F 5 HOH A 171 671 19 HOH HOH . F 5 HOH A 172 672 9 HOH HOH . F 5 HOH A 173 673 196 HOH HOH . F 5 HOH A 174 674 141 HOH HOH . F 5 HOH A 175 675 240 HOH HOH . F 5 HOH A 176 676 200 HOH HOH . F 5 HOH A 177 677 2 HOH HOH . F 5 HOH A 178 678 79 HOH HOH . F 5 HOH A 179 679 104 HOH HOH . F 5 HOH A 180 680 204 HOH HOH . F 5 HOH A 181 681 129 HOH HOH . F 5 HOH A 182 682 216 HOH HOH . F 5 HOH A 183 683 111 HOH HOH . F 5 HOH A 184 684 182 HOH HOH . F 5 HOH A 185 685 187 HOH HOH . F 5 HOH A 186 686 138 HOH HOH . F 5 HOH A 187 687 152 HOH HOH . F 5 HOH A 188 688 188 HOH HOH . F 5 HOH A 189 689 171 HOH HOH . F 5 HOH A 190 690 231 HOH HOH . F 5 HOH A 191 691 146 HOH HOH . F 5 HOH A 192 692 203 HOH HOH . F 5 HOH A 193 693 181 HOH HOH . F 5 HOH A 194 694 23 HOH HOH . F 5 HOH A 195 695 233 HOH HOH . F 5 HOH A 196 696 148 HOH HOH . F 5 HOH A 197 697 52 HOH HOH . F 5 HOH A 198 698 28 HOH HOH . F 5 HOH A 199 699 193 HOH HOH . F 5 HOH A 200 700 15 HOH HOH . F 5 HOH A 201 701 127 HOH HOH . F 5 HOH A 202 702 172 HOH HOH . F 5 HOH A 203 703 160 HOH HOH . F 5 HOH A 204 704 180 HOH HOH . F 5 HOH A 205 705 209 HOH HOH . F 5 HOH A 206 706 10 HOH HOH . F 5 HOH A 207 707 132 HOH HOH . F 5 HOH A 208 708 64 HOH HOH . F 5 HOH A 209 709 153 HOH HOH . F 5 HOH A 210 710 192 HOH HOH . F 5 HOH A 211 711 165 HOH HOH . F 5 HOH A 212 712 137 HOH HOH . F 5 HOH A 213 713 75 HOH HOH . F 5 HOH A 214 714 86 HOH HOH . F 5 HOH A 215 715 202 HOH HOH . F 5 HOH A 216 716 101 HOH HOH . F 5 HOH A 217 717 214 HOH HOH . F 5 HOH A 218 718 220 HOH HOH . F 5 HOH A 219 719 244 HOH HOH . F 5 HOH A 220 720 13 HOH HOH . F 5 HOH A 221 721 30 HOH HOH . F 5 HOH A 222 722 215 HOH HOH . F 5 HOH A 223 723 242 HOH HOH . F 5 HOH A 224 724 238 HOH HOH . F 5 HOH A 225 725 251 HOH HOH . F 5 HOH A 226 726 239 HOH HOH . F 5 HOH A 227 727 161 HOH HOH . F 5 HOH A 228 728 159 HOH HOH . F 5 HOH A 229 729 149 HOH HOH . F 5 HOH A 230 730 198 HOH HOH . F 5 HOH A 231 731 208 HOH HOH . F 5 HOH A 232 732 80 HOH HOH . F 5 HOH A 233 733 134 HOH HOH . F 5 HOH A 234 734 76 HOH HOH . F 5 HOH A 235 735 158 HOH HOH . F 5 HOH A 236 736 147 HOH HOH . F 5 HOH A 237 737 125 HOH HOH . F 5 HOH A 238 738 143 HOH HOH . F 5 HOH A 239 739 234 HOH HOH . F 5 HOH A 240 740 88 HOH HOH . F 5 HOH A 241 741 225 HOH HOH . F 5 HOH A 242 742 168 HOH HOH . F 5 HOH A 243 743 226 HOH HOH . F 5 HOH A 244 744 230 HOH HOH . F 5 HOH A 245 745 252 HOH HOH . F 5 HOH A 246 746 235 HOH HOH . F 5 HOH A 247 747 227 HOH HOH . F 5 HOH A 248 748 210 HOH HOH . F 5 HOH A 249 749 237 HOH HOH . F 5 HOH A 250 750 201 HOH HOH . F 5 HOH A 251 751 184 HOH HOH . F 5 HOH A 252 752 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -27.951 -43.982 5.312 1 56.55 0 C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 3 -28.731 -42.791 5.362 1 51.49 0 O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 3 -28.499 -45.041 6.242 1 58.34 0 C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 3 -28.463 -44.56 7.586 1 58.38 0 O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 3 -27.748 -46.352 6.148 1 59.74 0 C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 3 -26.393 -46.205 6.563 1 59.54 0 O3 GOL 403 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 6 #