data_8X5S # _model_server_result.job_id dB-GTX1rvcUbQdBbtQ_2uQ _model_server_result.datetime_utc '2024-11-27 17:14:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8x5s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8X5S # _exptl.entry_id 8X5S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 254.131 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SHIKIMATE-3-PHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8X5S _cell.length_a 59.424 _cell.length_b 59.424 _cell.length_c 102.25 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8X5S _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H11 O8 P' _chem_comp.formula_weight 254.131 _chem_comp.id S3P _chem_comp.mon_nstd_flag . _chem_comp.name SHIKIMATE-3-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 S3P doub 264 n n C1 C6 S3P sing 265 n n C1 C7 S3P sing 266 n n C2 C3 S3P sing 267 n n C2 H2 S3P sing 268 n n C3 C4 S3P sing 269 n n C3 O1 S3P sing 270 n n C3 H3 S3P sing 271 n n C4 C5 S3P sing 272 n n C4 O2 S3P sing 273 n n C4 H4 S3P sing 274 n n C5 C6 S3P sing 275 n n C5 O3 S3P sing 276 n n C5 H5 S3P sing 277 n n C6 H61 S3P sing 278 n n C6 H62 S3P sing 279 n n C7 O4 S3P sing 280 n n C7 O5 S3P doub 281 n n O1 P1 S3P sing 282 n n O2 HO2 S3P sing 283 n n O3 HO3 S3P sing 284 n n O4 HO4 S3P sing 285 n n P1 O6 S3P doub 286 n n P1 O7 S3P sing 287 n n P1 O8 S3P sing 288 n n O7 HO7 S3P sing 289 n n O8 HO8 S3P sing 290 n n # _atom_sites.entry_id 8X5S _atom_sites.fract_transf_matrix[1][1] 0.016828 _atom_sites.fract_transf_matrix[1][2] 0.009716 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019432 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 S3P A 1 201 201 S3P S3P . C 3 SO4 A 1 202 1 SO4 SO4 . D 3 SO4 A 1 203 2 SO4 SO4 . E 3 SO4 A 1 204 3 SO4 SO4 . F 3 SO4 A 1 205 4 SO4 SO4 . G 4 HOH A 1 301 240 HOH HOH . G 4 HOH A 2 302 152 HOH HOH . G 4 HOH A 3 303 86 HOH HOH . G 4 HOH A 4 304 189 HOH HOH . G 4 HOH A 5 305 268 HOH HOH . G 4 HOH A 6 306 134 HOH HOH . G 4 HOH A 7 307 33 HOH HOH . G 4 HOH A 8 308 334 HOH HOH . G 4 HOH A 9 309 69 HOH HOH . G 4 HOH A 10 310 44 HOH HOH . G 4 HOH A 11 311 11 HOH HOH . G 4 HOH A 12 312 169 HOH HOH . G 4 HOH A 13 313 292 HOH HOH . G 4 HOH A 14 314 291 HOH HOH . G 4 HOH A 15 315 237 HOH HOH . G 4 HOH A 16 316 154 HOH HOH . G 4 HOH A 17 317 3 HOH HOH . G 4 HOH A 18 318 327 HOH HOH . G 4 HOH A 19 319 78 HOH HOH . G 4 HOH A 20 320 47 HOH HOH . G 4 HOH A 21 321 27 HOH HOH . G 4 HOH A 22 322 59 HOH HOH . G 4 HOH A 23 323 25 HOH HOH . G 4 HOH A 24 324 67 HOH HOH . G 4 HOH A 25 325 82 HOH HOH . G 4 HOH A 26 326 40 HOH HOH . G 4 HOH A 27 327 55 HOH HOH . G 4 HOH A 28 328 42 HOH HOH . G 4 HOH A 29 329 330 HOH HOH . G 4 HOH A 30 330 276 HOH HOH . G 4 HOH A 31 331 198 HOH HOH . G 4 HOH A 32 332 19 HOH HOH . G 4 HOH A 33 333 135 HOH HOH . G 4 HOH A 34 334 1 HOH HOH . G 4 HOH A 35 335 64 HOH HOH . G 4 HOH A 36 336 24 HOH HOH . G 4 HOH A 37 337 31 HOH HOH . G 4 HOH A 38 338 76 HOH HOH . G 4 HOH A 39 339 12 HOH HOH . G 4 HOH A 40 340 99 HOH HOH . G 4 HOH A 41 341 17 HOH HOH . G 4 HOH A 42 342 4 HOH HOH . G 4 HOH A 43 343 52 HOH HOH . G 4 HOH A 44 344 80 HOH HOH . G 4 HOH A 45 345 54 HOH HOH . G 4 HOH A 46 346 160 HOH HOH . G 4 HOH A 47 347 9 HOH HOH . G 4 HOH A 48 348 23 HOH HOH . G 4 HOH A 49 349 46 HOH HOH . G 4 HOH A 50 350 290 HOH HOH . G 4 HOH A 51 351 241 HOH HOH . G 4 HOH A 52 352 177 HOH HOH . G 4 HOH A 53 353 43 HOH HOH . G 4 HOH A 54 354 73 HOH HOH . G 4 HOH A 55 355 103 HOH HOH . G 4 HOH A 56 356 10 HOH HOH . G 4 HOH A 57 357 77 HOH HOH . G 4 HOH A 58 358 37 HOH HOH . G 4 HOH A 59 359 68 HOH HOH . G 4 HOH A 60 360 20 HOH HOH . G 4 HOH A 61 361 285 HOH HOH . G 4 HOH A 62 362 36 HOH HOH . G 4 HOH A 63 363 239 HOH HOH . G 4 HOH A 64 364 328 HOH HOH . G 4 HOH A 65 365 167 HOH HOH . G 4 HOH A 66 366 5 HOH HOH . G 4 HOH A 67 367 115 HOH HOH . G 4 HOH A 68 368 7 HOH HOH . G 4 HOH A 69 369 164 HOH HOH . G 4 HOH A 70 370 309 HOH HOH . G 4 HOH A 71 371 245 HOH HOH . G 4 HOH A 72 372 49 HOH HOH . G 4 HOH A 73 373 83 HOH HOH . G 4 HOH A 74 374 281 HOH HOH . G 4 HOH A 75 375 322 HOH HOH . G 4 HOH A 76 376 8 HOH HOH . G 4 HOH A 77 377 139 HOH HOH . G 4 HOH A 78 378 72 HOH HOH . G 4 HOH A 79 379 331 HOH HOH . G 4 HOH A 80 380 32 HOH HOH . G 4 HOH A 81 381 70 HOH HOH . G 4 HOH A 82 382 301 HOH HOH . G 4 HOH A 83 383 293 HOH HOH . G 4 HOH A 84 384 187 HOH HOH . G 4 HOH A 85 385 75 HOH HOH . G 4 HOH A 86 386 34 HOH HOH . G 4 HOH A 87 387 16 HOH HOH . G 4 HOH A 88 388 289 HOH HOH . G 4 HOH A 89 389 62 HOH HOH . G 4 HOH A 90 390 21 HOH HOH . G 4 HOH A 91 391 112 HOH HOH . G 4 HOH A 92 392 284 HOH HOH . G 4 HOH A 93 393 51 HOH HOH . G 4 HOH A 94 394 329 HOH HOH . G 4 HOH A 95 395 39 HOH HOH . G 4 HOH A 96 396 326 HOH HOH . G 4 HOH A 97 397 122 HOH HOH . G 4 HOH A 98 398 28 HOH HOH . G 4 HOH A 99 399 38 HOH HOH . G 4 HOH A 100 400 56 HOH HOH . G 4 HOH A 101 401 29 HOH HOH . G 4 HOH A 102 402 48 HOH HOH . G 4 HOH A 103 403 142 HOH HOH . G 4 HOH A 104 404 15 HOH HOH . G 4 HOH A 105 405 58 HOH HOH . G 4 HOH A 106 406 22 HOH HOH . G 4 HOH A 107 407 279 HOH HOH . G 4 HOH A 108 408 95 HOH HOH . G 4 HOH A 109 409 287 HOH HOH . G 4 HOH A 110 410 272 HOH HOH . G 4 HOH A 111 411 314 HOH HOH . G 4 HOH A 112 412 74 HOH HOH . G 4 HOH A 113 413 186 HOH HOH . G 4 HOH A 114 414 333 HOH HOH . G 4 HOH A 115 415 294 HOH HOH . G 4 HOH A 116 416 335 HOH HOH . G 4 HOH A 117 417 278 HOH HOH . G 4 HOH A 118 418 310 HOH HOH . G 4 HOH A 119 419 185 HOH HOH . G 4 HOH A 120 420 305 HOH HOH . G 4 HOH A 121 421 318 HOH HOH . G 4 HOH A 122 422 296 HOH HOH . G 4 HOH A 123 423 35 HOH HOH . G 4 HOH A 124 424 270 HOH HOH . G 4 HOH A 125 425 66 HOH HOH . G 4 HOH A 126 426 307 HOH HOH . G 4 HOH A 127 427 219 HOH HOH . G 4 HOH A 128 428 315 HOH HOH . G 4 HOH A 129 429 295 HOH HOH . G 4 HOH A 130 430 30 HOH HOH . G 4 HOH A 131 431 319 HOH HOH . G 4 HOH A 132 432 332 HOH HOH . G 4 HOH A 133 433 260 HOH HOH . G 4 HOH A 134 434 300 HOH HOH . G 4 HOH A 135 435 262 HOH HOH . G 4 HOH A 136 436 188 HOH HOH . G 4 HOH A 137 437 288 HOH HOH . G 4 HOH A 138 438 303 HOH HOH . G 4 HOH A 139 439 299 HOH HOH . G 4 HOH A 140 440 306 HOH HOH . G 4 HOH A 141 441 63 HOH HOH . G 4 HOH A 142 442 60 HOH HOH . G 4 HOH A 143 443 57 HOH HOH . G 4 HOH A 144 444 311 HOH HOH . G 4 HOH A 145 445 308 HOH HOH . G 4 HOH A 146 446 324 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 S3P . . . B 2 32.599 -15.536 18.805 1 25.9 0 C1 S3P 201 A 1 HETATM 2 C C2 S3P . . . B 2 31.472 -16.233 18.586 1 29.03 0 C2 S3P 201 A 1 HETATM 3 C C3 S3P . . . B 2 31.281 -17.69 18.876 1 32.05 0 C3 S3P 201 A 1 HETATM 4 C C4 S3P . . . B 2 32.649 -18.362 19.033 1 29.99 0 C4 S3P 201 A 1 HETATM 5 C C5 S3P . . . B 2 33.6 -17.559 19.901 1 30.72 0 C5 S3P 201 A 1 HETATM 6 C C6 S3P . . . B 2 33.858 -16.186 19.332 1 25.11 0 C6 S3P 201 A 1 HETATM 7 C C7 S3P . . . B 2 32.603 -14.114 18.444 1 25.74 0 C7 S3P 201 A 1 HETATM 8 O O1 S3P . . . B 2 30.434 -18.272 17.841 1 33.21 0 O1 S3P 201 A 1 HETATM 9 O O2 S3P . . . B 2 33.279 -18.537 17.747 1 27.74 0 O2 S3P 201 A 1 HETATM 10 O O3 S3P . . . B 2 33.094 -17.429 21.222 1 30.02 0 O3 S3P 201 A 1 HETATM 11 O O4 S3P . . . B 2 31.51 -13.503 18.401 1 27.1 0 O4 S3P 201 A 1 HETATM 12 O O5 S3P . . . B 2 33.684 -13.567 18.056 1 24.54 0 O5 S3P 201 A 1 HETATM 13 P P1 S3P . . . B 2 28.692 -18.212 17.789 1 48.44 0 P1 S3P 201 A 1 HETATM 14 O O6 S3P . . . B 2 28.158 -16.956 17.138 1 32.74 0 O6 S3P 201 A 1 HETATM 15 O O7 S3P . . . B 2 28.253 -18.203 19.28 1 43.1 0 O7 S3P 201 A 1 HETATM 16 O O8 S3P . . . B 2 28.246 -19.477 16.991 1 54.14 0 O8 S3P 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #