data_8X62 # _model_server_result.job_id r4InDt_Vi8xD02-RIsSUAw _model_server_result.datetime_utc '2025-07-30 19:40:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8x62 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8X62 # _exptl.entry_id 8X62 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 575.654 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[7-[1,5-dimethyl-3-(phenoxymethyl)pyrazol-4-yl]-3-(3-naphthalen-1-yloxypropyl)-1~{H}-indol-2-yl]-2,2-bis(oxidanyl)ethanone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.771 _cell.angle_gamma 90 _cell.entry_id 8X62 _cell.length_a 52.761 _cell.length_b 56.011 _cell.length_c 66.097 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8X62 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C35 H33 N3 O5' _chem_comp.formula_weight 575.654 _chem_comp.id YO0 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[7-[1,5-dimethyl-3-(phenoxymethyl)pyrazol-4-yl]-3-(3-naphthalen-1-yloxypropyl)-1~{H}-indol-2-yl]-2,2-bis(oxidanyl)ethanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C35 YO0 sing 374 n n C35 C21 YO0 sing 375 n n C23 C24 YO0 sing 376 n n C23 C22 YO0 sing 377 n n C24 O2 YO0 sing 378 n n C21 C19 YO0 sing 379 n n C22 C20 YO0 sing 380 n n C19 C20 YO0 doub 381 n y C19 N3 YO0 sing 382 n y O2 C25 YO0 sing 383 n n C20 C15 YO0 sing 384 n y C30 C25 YO0 doub 385 n y C30 C29 YO0 sing 386 n y C25 C26 YO0 sing 387 n y C29 C28 YO0 doub 388 n y N3 C14 YO0 sing 389 n y C26 C31 YO0 doub 390 n y C26 C27 YO0 sing 391 n y C31 C32 YO0 sing 392 n y C28 C27 YO0 sing 393 n y C27 C34 YO0 doub 394 n y C15 C14 YO0 doub 395 n y C15 C16 YO0 sing 396 n y C32 C33 YO0 doub 397 n y C14 C13 YO0 sing 398 n y C34 C33 YO0 sing 399 n y C16 C17 YO0 doub 400 n y C13 C10 YO0 sing 401 n n C13 C18 YO0 doub 402 n y C17 C18 YO0 sing 403 n y C10 C9 YO0 doub 404 n y C10 C8 YO0 sing 405 n y C11 C9 YO0 sing 406 n n C9 N2 YO0 sing 407 n y C7 C8 YO0 sing 408 n n C7 O1 YO0 sing 409 n n C8 N1 YO0 doub 410 n y C4 C3 YO0 doub 411 n y C4 C5 YO0 sing 412 n y N2 N1 YO0 sing 413 n y N2 C12 YO0 sing 414 n n C3 C2 YO0 sing 415 n y O1 C5 YO0 sing 416 n n C5 C6 YO0 doub 417 n y C2 C1 YO0 doub 418 n y C6 C1 YO0 sing 419 n y N3 H1 YO0 sing 420 n n C4 H2 YO0 sing 421 n n C6 H3 YO0 sing 422 n n C7 H4 YO0 sing 423 n n C7 H5 YO0 sing 424 n n C17 H6 YO0 sing 425 n n C22 H9 YO0 sing 426 n n C22 H10 YO0 sing 427 n n C24 H11 YO0 sing 428 n n C24 H12 YO0 sing 429 n n C28 H13 YO0 sing 430 n n C1 H14 YO0 sing 431 n n C2 H15 YO0 sing 432 n n C3 H16 YO0 sing 433 n n C11 H17 YO0 sing 434 n n C11 H18 YO0 sing 435 n n C11 H19 YO0 sing 436 n n C12 H20 YO0 sing 437 n n C12 H21 YO0 sing 438 n n C12 H22 YO0 sing 439 n n C16 H23 YO0 sing 440 n n C18 H24 YO0 sing 441 n n C23 H25 YO0 sing 442 n n C23 H26 YO0 sing 443 n n C29 H27 YO0 sing 444 n n C30 H28 YO0 sing 445 n n C31 H29 YO0 sing 446 n n C32 H30 YO0 sing 447 n n C33 H31 YO0 sing 448 n n C34 H32 YO0 sing 449 n n C35 H33 YO0 sing 450 n n C35 O5 YO0 sing 451 n n O3 H35 YO0 sing 452 n n C21 O4 YO0 doub 453 n n O5 H7 YO0 sing 454 n n # _atom_sites.entry_id 8X62 _atom_sites.fract_transf_matrix[1][1] 0.018953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007956 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id YO0 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id YO0 _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 YO0 . . . C 2 44.999 3.528 26.712 1 66.46 ? N1 YO0 401 A 1 HETATM 2 N N3 YO0 . . . C 2 45.852 0.224 23.308 1 67.25 ? N3 YO0 401 A 1 HETATM 3 C C4 YO0 . . . C 2 40.052 2.56 26.611 1 65.6 ? C4 YO0 401 A 1 HETATM 4 C C5 YO0 . . . C 2 40.864 2.513 27.744 1 67.51 ? C5 YO0 401 A 1 HETATM 5 C C6 YO0 . . . C 2 40.285 2.54 29.036 1 63.47 ? C6 YO0 401 A 1 HETATM 6 C C7 YO0 . . . C 2 42.747 2.372 26.301 1 62.59 ? C7 YO0 401 A 1 HETATM 7 C C8 YO0 . . . C 2 44.269 2.453 26.366 1 66.48 ? C8 YO0 401 A 1 HETATM 8 C C10 YO0 . . . C 2 45.22 1.378 26.084 1 63.83 ? C10 YO0 401 A 1 HETATM 9 C C13 YO0 . . . C 2 44.913 -0.062 25.638 1 67.39 ? C13 YO0 401 A 1 HETATM 10 C C15 YO0 . . . C 2 45.005 -1.765 23.866 1 70.21 ? C15 YO0 401 A 1 HETATM 11 C C17 YO0 . . . C 2 44.039 -2.306 26.044 1 60.32 ? C17 YO0 401 A 1 HETATM 12 C C20 YO0 . . . C 2 45.491 -1.826 22.486 1 70.19 ? C20 YO0 401 A 1 HETATM 13 C C21 YO0 . . . C 2 46.622 0.047 21.032 1 67.07 ? C21 YO0 401 A 1 HETATM 14 C C22 YO0 . . . C 2 45.401 -3.091 21.595 1 63.69 ? C22 YO0 401 A 1 HETATM 15 C C24 YO0 . . . C 2 43.16 -4.322 20.922 1 66.35 ? C24 YO0 401 A 1 HETATM 16 C C26 YO0 . . . C 2 42.165 -6.867 23.34 1 70.97 ? C26 YO0 401 A 1 HETATM 17 C C28 YO0 . . . C 2 39.76 -6.722 23.719 1 73.41 ? C28 YO0 401 A 1 HETATM 18 C C1 YO0 . . . C 2 38.887 2.614 29.176 1 65.94 ? C1 YO0 401 A 1 HETATM 19 C C2 YO0 . . . C 2 38.076 2.662 28.043 1 74.16 ? C2 YO0 401 A 1 HETATM 20 C C3 YO0 . . . C 2 38.65 2.635 26.755 1 73.9 ? C3 YO0 401 A 1 HETATM 21 O O1 YO0 . . . C 2 42.287 2.436 27.613 1 66.18 ? O1 YO0 401 A 1 HETATM 22 N N2 YO0 . . . C 2 46.321 3.246 26.67 1 69.99 ? N2 YO0 401 A 1 HETATM 23 C C9 YO0 . . . C 2 46.541 1.967 26.297 1 65.4 ? C9 YO0 401 A 1 HETATM 24 C C11 YO0 . . . C 2 47.903 1.267 26.132 1 65.34 ? C11 YO0 401 A 1 HETATM 25 C C12 YO0 . . . C 2 47.371 4.198 26.987 1 67.98 ? C12 YO0 401 A 1 HETATM 26 C C14 YO0 . . . C 2 45.265 -0.465 24.308 1 69.4 ? C14 YO0 401 A 1 HETATM 27 C C16 YO0 . . . C 2 44.384 -2.697 24.745 1 63.85 ? C16 YO0 401 A 1 HETATM 28 C C18 YO0 . . . C 2 44.307 -0.969 26.495 1 69.3 ? C18 YO0 401 A 1 HETATM 29 C C19 YO0 . . . C 2 46.011 -0.528 22.205 1 70.34 ? C19 YO0 401 A 1 HETATM 30 C C23 YO0 . . . C 2 44.096 -3.076 20.749 1 73.99 ? C23 YO0 401 A 1 HETATM 31 O O2 YO0 . . . C 2 43.357 -4.943 22.247 1 60.92 ? O2 YO0 401 A 1 HETATM 32 C C25 YO0 . . . C 2 42.133 -5.568 22.759 1 70.79 ? C25 YO0 401 A 1 HETATM 33 C C27 YO0 . . . C 2 41 -7.436 23.814 1 71.31 ? C27 YO0 401 A 1 HETATM 34 C C29 YO0 . . . C 2 39.729 -5.46 23.152 1 72.48 ? C29 YO0 401 A 1 HETATM 35 C C30 YO0 . . . C 2 40.915 -4.875 22.666 1 72.07 ? C30 YO0 401 A 1 HETATM 36 C C31 YO0 . . . C 2 43.408 -7.59 23.44 1 67.03 ? C31 YO0 401 A 1 HETATM 37 C C32 YO0 . . . C 2 43.434 -8.863 24.014 1 64.99 ? C32 YO0 401 A 1 HETATM 38 C C33 YO0 . . . C 2 42.251 -9.437 24.493 1 58.24 ? C33 YO0 401 A 1 HETATM 39 C C34 YO0 . . . C 2 41.028 -8.726 24.397 1 61.13 ? C34 YO0 401 A 1 HETATM 40 C C35 YO0 . . . C 2 46.988 -0.876 19.87 1 65.46 ? C35 YO0 401 A 1 HETATM 41 O O3 YO0 . . . C 2 46.115 -1.257 18.949 1 74.9 ? O3 YO0 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 41 #