data_8X63
#
_model_server_result.job_id            aD1mgw9d1eI7UO0-lHuTsA 
_model_server_result.datetime_utc      '2024-11-21 13:51:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8x63 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    8X63 
#
_exptl.entry_id    8X63 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              285.384 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            mepyramine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8X63 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8X63 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 89 B CYS 100 1_555 A SG CYS 169 B CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 346 B CYS 441 1_555 A SG CYS 349 B CYS 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C17 H23 N3 O' 
_chem_comp.formula_weight    285.384 
_chem_comp.id                Y5E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              mepyramine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "~{N}'-[(4-methoxyphenyl)methyl]-~{N},~{N}-dimethyl-~{N}'-pyridin-2-yl-ethane-1,2-diamine" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 O02 Y5E sing 374 n n 
O02 C03 Y5E sing 375 n n 
C03 C04 Y5E doub 376 n y 
C03 C21 Y5E sing 377 n y 
C04 C05 Y5E sing 378 n y 
C21 C20 Y5E doub 379 n y 
C05 C06 Y5E doub 380 n y 
C20 C06 Y5E sing 381 n y 
C06 C07 Y5E sing 382 n n 
C13 N11 Y5E sing 383 n n 
C07 N08 Y5E sing 384 n n 
C10 N11 Y5E sing 385 n n 
C10 C09 Y5E sing 386 n n 
N11 C12 Y5E sing 387 n n 
N08 C09 Y5E sing 388 n n 
N08 C14 Y5E sing 389 n n 
N19 C14 Y5E doub 390 n y 
N19 C18 Y5E sing 391 n y 
C14 C15 Y5E sing 392 n y 
C18 C17 Y5E doub 393 n y 
C15 C16 Y5E doub 394 n y 
C17 C16 Y5E sing 395 n y 
C10 H1 Y5E sing 396 n n 
C10 H2 Y5E sing 397 n n 
C13 H3 Y5E sing 398 n n 
C13 H4 Y5E sing 399 n n 
C13 H5 Y5E sing 400 n n 
C15 H6 Y5E sing 401 n n 
C17 H7 Y5E sing 402 n n 
C20 H8 Y5E sing 403 n n 
C21 H9 Y5E sing 404 n n 
C01 H10 Y5E sing 405 n n 
C01 H11 Y5E sing 406 n n 
C01 H12 Y5E sing 407 n n 
C04 H13 Y5E sing 408 n n 
C05 H14 Y5E sing 409 n n 
C07 H15 Y5E sing 410 n n 
C07 H16 Y5E sing 411 n n 
C09 H17 Y5E sing 412 n n 
C09 H18 Y5E sing 413 n n 
C12 H19 Y5E sing 414 n n 
C12 H20 Y5E sing 415 n n 
C12 H21 Y5E sing 416 n n 
C16 H22 Y5E sing 417 n n 
C18 H23 Y5E sing 418 n n 
#
_atom_sites.entry_id                     8X63 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           Y5E 
_pdbx_nonpoly_scheme.pdb_strand_id    B 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      601 
_pdbx_nonpoly_scheme.auth_seq_num     485 
_pdbx_nonpoly_scheme.pdb_mon_id       Y5E 
_pdbx_nonpoly_scheme.auth_mon_id      LIG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 Y5E . . . B 2 136.965 132.456 172.058 1 14.45 ? C10 Y5E 601 B 1 
HETATM 2 C C13 Y5E . . . B 2 135.765 130.597 171.128 1 14.45 ? C13 Y5E 601 B 1 
HETATM 3 C C15 Y5E . . . B 2 137.956 135.208 175.441 1 14.45 ? C15 Y5E 601 B 1 
HETATM 4 C C17 Y5E . . . B 2 138.008 137.487 176.11 1 14.45 ? C17 Y5E 601 B 1 
HETATM 5 C C20 Y5E . . . B 2 136.403 135.704 170.636 1 14.45 ? C20 Y5E 601 B 1 
HETATM 6 C C21 Y5E . . . B 2 135.732 136.661 169.875 1 14.45 ? C21 Y5E 601 B 1 
HETATM 7 C C01 Y5E . . . B 2 135.484 138.339 167.341 1 14.45 ? C01 Y5E 601 B 1 
HETATM 8 C C03 Y5E . . . B 2 136.405 137.792 169.434 1 14.45 ? C03 Y5E 601 B 1 
HETATM 9 C C04 Y5E . . . B 2 137.744 137.966 169.747 1 14.45 ? C04 Y5E 601 B 1 
HETATM 10 C C05 Y5E . . . B 2 138.414 137.013 170.511 1 14.45 ? C05 Y5E 601 B 1 
HETATM 11 C C06 Y5E . . . B 2 137.742 135.878 170.951 1 14.45 ? C06 Y5E 601 B 1 
HETATM 12 C C07 Y5E . . . B 2 138.478 134.82 171.793 1 14.45 ? C07 Y5E 601 B 1 
HETATM 13 C C09 Y5E . . . B 2 136.977 133.394 173.296 1 14.45 ? C09 Y5E 601 B 1 
HETATM 14 C C12 Y5E . . . B 2 137.007 130.315 173.159 1 14.45 ? C12 Y5E 601 B 1 
HETATM 15 C C14 Y5E . . . B 2 137.865 135.628 174.126 1 14.45 ? C14 Y5E 601 B 1 
HETATM 16 C C16 Y5E . . . B 2 138.031 136.144 176.474 1 14.45 ? C16 Y5E 601 B 1 
HETATM 17 C C18 Y5E . . . B 2 137.913 137.843 174.772 1 14.45 ? C18 Y5E 601 B 1 
HETATM 18 N N08 Y5E . . . B 2 137.782 134.615 173.055 1 14.45 ? N08 Y5E 601 B 1 
HETATM 19 N N11 Y5E . . . B 2 136.183 131.243 172.379 1 14.45 ? N11 Y5E 601 B 1 
HETATM 20 N N19 Y5E . . . B 2 137.842 136.919 173.819 1 14.45 ? N19 Y5E 601 B 1 
HETATM 21 O O02 Y5E . . . B 2 135.724 138.752 168.664 1 14.45 ? O02 Y5E 601 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           21 
#