data_8X6X
#
_model_server_result.job_id            DxWksYuuJk7G0oBYahkWqQ 
_model_server_result.datetime_utc      '2024-12-26 14:14:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8x6x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    8X6X 
#
_exptl.entry_id    8X6X 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              712.977 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{R})-1-[(9~{Z},12~{Z},15~{E})-octadeca-9,12,15-trienoyl]oxy-3-phosphonooxy-propan-2-yl] nonadecanoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8X6X 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8X6X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C40 H73 O8 P' 
_chem_comp.formula_weight    712.977 
_chem_comp.id                Y86 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{R})-1-[(9~{Z},12~{Z},15~{E})-octadeca-9,12,15-trienoyl]oxy-3-phosphonooxy-propan-2-yl] nonadecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 Y86 sing 374 n n 
C2 C3 Y86 sing 375 n n 
C3 C4 Y86 doub 376 z n 
C4 C5 Y86 sing 377 n n 
C5 C6 Y86 sing 378 n n 
C6 C7 Y86 doub 379 z n 
C7 C8 Y86 sing 380 n n 
C8 C9 Y86 sing 381 n n 
C9 C10 Y86 doub 382 z n 
C10 C11 Y86 sing 383 n n 
C11 C12 Y86 sing 384 n n 
C12 C13 Y86 sing 385 n n 
C13 C14 Y86 sing 386 n n 
C14 C15 Y86 sing 387 n n 
C15 C16 Y86 sing 388 n n 
C16 C17 Y86 sing 389 n n 
C17 C18 Y86 sing 390 n n 
C18 O1 Y86 sing 391 n n 
O1 C19 Y86 sing 392 n n 
C19 C20 Y86 sing 393 n n 
C20 O2 Y86 sing 394 n n 
O2 C21 Y86 sing 395 n n 
C21 C22 Y86 sing 396 n n 
C22 C23 Y86 sing 397 n n 
C23 C24 Y86 sing 398 n n 
C24 C25 Y86 sing 399 n n 
C25 C26 Y86 sing 400 n n 
C26 C27 Y86 sing 401 n n 
C27 C28 Y86 sing 402 n n 
C28 C29 Y86 sing 403 n n 
C29 C30 Y86 sing 404 n n 
C30 C31 Y86 sing 405 n n 
C31 C32 Y86 sing 406 n n 
C32 C33 Y86 sing 407 n n 
C33 C34 Y86 sing 408 n n 
C34 C35 Y86 sing 409 n n 
C35 C36 Y86 sing 410 n n 
C36 C37 Y86 sing 411 n n 
C37 C38 Y86 sing 412 n n 
C38 C39 Y86 sing 413 n n 
C21 O3 Y86 doub 414 n n 
C20 C40 Y86 sing 415 n n 
C40 O4 Y86 sing 416 n n 
O4 P1 Y86 sing 417 n n 
P1 O5 Y86 sing 418 n n 
P1 O6 Y86 sing 419 n n 
P1 O7 Y86 doub 420 n n 
C18 O8 Y86 doub 421 n n 
C4 H7 Y86 sing 422 n n 
C5 H8 Y86 sing 423 n n 
C5 H9 Y86 sing 424 n n 
C6 H10 Y86 sing 425 n n 
C7 H11 Y86 sing 426 n n 
C8 H12 Y86 sing 427 n n 
C8 H13 Y86 sing 428 n n 
C10 H15 Y86 sing 429 n n 
C13 H20 Y86 sing 430 n n 
C13 H21 Y86 sing 431 n n 
C15 H25 Y86 sing 432 n n 
C15 H24 Y86 sing 433 n n 
C17 H28 Y86 sing 434 n n 
C17 H29 Y86 sing 435 n n 
C20 H32 Y86 sing 436 n n 
C22 H34 Y86 sing 437 n n 
C22 H33 Y86 sing 438 n n 
C24 H37 Y86 sing 439 n n 
C24 H38 Y86 sing 440 n n 
C26 H42 Y86 sing 441 n n 
C26 H41 Y86 sing 442 n n 
C28 H45 Y86 sing 443 n n 
C28 H46 Y86 sing 444 n n 
C1 H1 Y86 sing 445 n n 
C1 H3 Y86 sing 446 n n 
C1 H2 Y86 sing 447 n n 
C11 H17 Y86 sing 448 n n 
C11 H16 Y86 sing 449 n n 
C12 H19 Y86 sing 450 n n 
C12 H18 Y86 sing 451 n n 
C14 H23 Y86 sing 452 n n 
C14 H22 Y86 sing 453 n n 
C16 H26 Y86 sing 454 n n 
C16 H27 Y86 sing 455 n n 
C19 H31 Y86 sing 456 n n 
C19 H30 Y86 sing 457 n n 
C2 H5 Y86 sing 458 n n 
C2 H4 Y86 sing 459 n n 
C23 H36 Y86 sing 460 n n 
C23 H35 Y86 sing 461 n n 
C25 H40 Y86 sing 462 n n 
C25 H39 Y86 sing 463 n n 
C27 H44 Y86 sing 464 n n 
C27 H43 Y86 sing 465 n n 
C29 H48 Y86 sing 466 n n 
C29 H47 Y86 sing 467 n n 
C3 H6 Y86 sing 468 n n 
C30 H50 Y86 sing 469 n n 
C30 H49 Y86 sing 470 n n 
C31 H51 Y86 sing 471 n n 
C31 H52 Y86 sing 472 n n 
C32 H53 Y86 sing 473 n n 
C32 H54 Y86 sing 474 n n 
C33 H56 Y86 sing 475 n n 
C33 H55 Y86 sing 476 n n 
C34 H57 Y86 sing 477 n n 
C34 H58 Y86 sing 478 n n 
C35 H60 Y86 sing 479 n n 
C35 H59 Y86 sing 480 n n 
C36 H62 Y86 sing 481 n n 
C36 H61 Y86 sing 482 n n 
C37 H63 Y86 sing 483 n n 
C37 H64 Y86 sing 484 n n 
C38 H66 Y86 sing 485 n n 
C38 H65 Y86 sing 486 n n 
C39 H69 Y86 sing 487 n n 
C39 H68 Y86 sing 488 n n 
C39 H67 Y86 sing 489 n n 
C40 H70 Y86 sing 490 n n 
C40 H71 Y86 sing 491 n n 
C9 H14 Y86 sing 492 n n 
O5 H72 Y86 sing 493 n n 
O6 H73 Y86 sing 494 n n 
#
_atom_sites.entry_id                     8X6X 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 Y86 A 1 601 601 Y86 LIG . 
D 3 Y8F A 1 602 1 Y8F LIP . 
E 2 Y86 B 1 601 601 Y86 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 Y86 . . . C 2 165.009 167.885 204.024 1 65.16 ? C4 Y86 601 A 1 
HETATM 2 C C5 Y86 . . . C 2 164.265 167.659 205.301 1 65.16 ? C5 Y86 601 A 1 
HETATM 3 C C6 Y86 . . . C 2 164.215 166.245 205.786 1 65.16 ? C6 Y86 601 A 1 
HETATM 4 C C7 Y86 . . . C 2 163.716 165.852 206.938 1 65.16 ? C7 Y86 601 A 1 
HETATM 5 C C8 Y86 . . . C 2 163.322 166.748 208.071 1 65.16 ? C8 Y86 601 A 1 
HETATM 6 C C10 Y86 . . . C 2 164.768 168.627 208.915 1 65.16 ? C10 Y86 601 A 1 
HETATM 7 C C13 Y86 . . . C 2 165.806 171.509 207.906 1 65.16 ? C13 Y86 601 A 1 
HETATM 8 C C15 Y86 . . . C 2 166.594 172.54 205.719 1 65.16 ? C15 Y86 601 A 1 
HETATM 9 C C17 Y86 . . . C 2 168.956 172.648 204.854 1 65.16 ? C17 Y86 601 A 1 
HETATM 10 C C20 Y86 . . . C 2 172.456 175.68 205.754 1 65.16 ? C20 Y86 601 A 1 
HETATM 11 C C21 Y86 . . . C 2 173.338 177.397 204.321 1 65.16 ? C21 Y86 601 A 1 
HETATM 12 C C22 Y86 . . . C 2 173.95 178.77 204.252 1 65.16 ? C22 Y86 601 A 1 
HETATM 13 C C24 Y86 . . . C 2 175.323 178.62 202.136 1 65.16 ? C24 Y86 601 A 1 
HETATM 14 C C26 Y86 . . . C 2 174.225 177.438 200.194 1 65.16 ? C26 Y86 601 A 1 
HETATM 15 C C28 Y86 . . . C 2 174.252 177.881 197.681 1 65.16 ? C28 Y86 601 A 1 
HETATM 16 C C1 Y86 . . . C 2 168.1 169.143 202.869 1 65.16 ? C1 Y86 601 A 1 
HETATM 17 C C11 Y86 . . . C 2 163.991 169.774 208.348 1 65.16 ? C11 Y86 601 A 1 
HETATM 18 C C12 Y86 . . . C 2 164.569 171.111 208.695 1 65.16 ? C12 Y86 601 A 1 
HETATM 19 C C14 Y86 . . . C 2 165.556 171.705 206.432 1 65.16 ? C14 Y86 601 A 1 
HETATM 20 C C16 Y86 . . . C 2 168.021 172.027 205.849 1 65.16 ? C16 Y86 601 A 1 
HETATM 21 C C18 Y86 . . . C 2 169.244 174.106 205.093 1 65.16 ? C18 Y86 601 A 1 
HETATM 22 C C19 Y86 . . . C 2 170.997 175.671 205.351 1 65.16 ? C19 Y86 601 A 1 
HETATM 23 C C2 Y86 . . . C 2 167.08 168.09 202.621 1 65.16 ? C2 Y86 601 A 1 
HETATM 24 C C23 Y86 . . . C 2 174.144 179.264 202.849 1 65.16 ? C23 Y86 601 A 1 
HETATM 25 C C25 Y86 . . . C 2 175.157 178.54 200.636 1 65.16 ? C25 Y86 601 A 1 
HETATM 26 C C27 Y86 . . . C 2 173.438 177.724 198.938 1 65.16 ? C27 Y86 601 A 1 
HETATM 27 C C29 Y86 . . . C 2 173.412 178.121 196.45 1 65.16 ? C29 Y86 601 A 1 
HETATM 28 C C3 Y86 . . . C 2 166.309 167.73 203.853 1 65.16 ? C3 Y86 601 A 1 
HETATM 29 C C30 Y86 . . . C 2 174.201 178.36 195.188 1 65.16 ? C30 Y86 601 A 1 
HETATM 30 C C31 Y86 . . . C 2 175.011 177.178 194.727 1 65.16 ? C31 Y86 601 A 1 
HETATM 31 C C32 Y86 . . . C 2 175.964 177.488 193.603 1 65.16 ? C32 Y86 601 A 1 
HETATM 32 C C33 Y86 . . . C 2 176.89 178.641 193.895 1 65.16 ? C33 Y86 601 A 1 
HETATM 33 C C34 Y86 . . . C 2 178.149 178.649 193.07 1 65.16 ? C34 Y86 601 A 1 
HETATM 34 C C35 Y86 . . . C 2 179.121 179.74 193.441 1 65.16 ? C35 Y86 601 A 1 
HETATM 35 C C36 Y86 . . . C 2 180.546 179.449 193.044 1 65.16 ? C36 Y86 601 A 1 
HETATM 36 C C37 Y86 . . . C 2 181.097 178.19 193.665 1 65.16 ? C37 Y86 601 A 1 
HETATM 37 C C38 Y86 . . . C 2 182.531 177.849 193.366 1 65.16 ? C38 Y86 601 A 1 
HETATM 38 C C39 Y86 . . . C 2 182.987 176.603 194.087 1 65.16 ? C39 Y86 601 A 1 
HETATM 39 C C40 Y86 . . . C 2 172.687 175.255 207.187 1 65.16 ? C40 Y86 601 A 1 
HETATM 40 C C9 Y86 . . . C 2 164.484 167.34 208.807 1 65.16 ? C9 Y86 601 A 1 
HETATM 41 O O1 Y86 . . . C 2 170.534 174.303 205.346 1 65.16 ? O1 Y86 601 A 1 
HETATM 42 O O2 Y86 . . . C 2 173.048 176.997 205.569 1 65.16 ? O2 Y86 601 A 1 
HETATM 43 O O3 Y86 . . . C 2 173.129 176.706 203.361 1 65.16 ? O3 Y86 601 A 1 
HETATM 44 O O4 Y86 . . . C 2 172.29 173.873 207.418 1 65.16 ? O4 Y86 601 A 1 
HETATM 45 O O5 Y86 . . . C 2 174.62 172.973 207.436 1 65.16 ? O5 Y86 601 A 1 
HETATM 46 O O6 Y86 . . . C 2 172.643 171.407 207.467 1 65.16 ? O6 Y86 601 A 1 
HETATM 47 O O7 Y86 . . . C 2 173.183 172.707 205.375 1 65.16 ? O7 Y86 601 A 1 
HETATM 48 O O8 Y86 . . . C 2 168.436 174.995 205.056 1 65.16 ? O8 Y86 601 A 1 
HETATM 49 P P1 Y86 . . . C 2 173.238 172.676 206.889 1 65.16 ? P1 Y86 601 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           49 
#