data_8X6X
#
_model_server_result.job_id            VoG4_UUmPlW4dqe8lz2i5A 
_model_server_result.datetime_utc      '2024-12-26 14:02:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8x6x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    8X6X 
#
_exptl.entry_id    8X6X 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              550.705 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{S})-1-dodecanoyloxy-3-phosphonooxy-propan-2-yl] tridecanoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8X6X 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8X6X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C28 H55 O8 P' 
_chem_comp.formula_weight    550.705 
_chem_comp.id                Y8F 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{S})-1-dodecanoyloxy-3-phosphonooxy-propan-2-yl] tridecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C28 C27 Y8F sing 495 n n 
C27 C26 Y8F sing 496 n n 
C26 C25 Y8F sing 497 n n 
C25 C24 Y8F sing 498 n n 
C23 C24 Y8F sing 499 n n 
C23 C22 Y8F sing 500 n n 
C22 C21 Y8F sing 501 n n 
C21 C20 Y8F sing 502 n n 
C20 C19 Y8F sing 503 n n 
C19 C18 Y8F sing 504 n n 
C18 C17 Y8F sing 505 n n 
C17 O8 Y8F doub 506 n n 
C17 O7 Y8F sing 507 n n 
O3 P1 Y8F doub 508 n n 
O7 C16 Y8F sing 509 n n 
C16 C1 Y8F sing 510 n n 
P1 O2 Y8F sing 511 n n 
P1 O1 Y8F sing 512 n n 
P1 O4 Y8F sing 513 n n 
C2 O1 Y8F sing 514 n n 
C2 C1 Y8F sing 515 n n 
C1 O5 Y8F sing 516 n n 
O5 C3 Y8F sing 517 n n 
O6 C3 Y8F doub 518 n n 
C3 C4 Y8F sing 519 n n 
C4 C5 Y8F sing 520 n n 
C5 C6 Y8F sing 521 n n 
C6 C7 Y8F sing 522 n n 
C7 C8 Y8F sing 523 n n 
C8 C9 Y8F sing 524 n n 
C9 C10 Y8F sing 525 n n 
C10 C11 Y8F sing 526 n n 
C11 C12 Y8F sing 527 n n 
C12 C13 Y8F sing 528 n n 
C13 C14 Y8F sing 529 n n 
C14 C15 Y8F sing 530 n n 
C1 H1 Y8F sing 531 n n 
C2 H2 Y8F sing 532 n n 
C2 H3 Y8F sing 533 n n 
C4 H4 Y8F sing 534 n n 
C4 H5 Y8F sing 535 n n 
C5 H6 Y8F sing 536 n n 
C5 H7 Y8F sing 537 n n 
C6 H8 Y8F sing 538 n n 
C6 H9 Y8F sing 539 n n 
O2 H10 Y8F sing 540 n n 
O4 H11 Y8F sing 541 n n 
C10 H12 Y8F sing 542 n n 
C10 H13 Y8F sing 543 n n 
C11 H14 Y8F sing 544 n n 
C11 H15 Y8F sing 545 n n 
C12 H16 Y8F sing 546 n n 
C12 H17 Y8F sing 547 n n 
C13 H18 Y8F sing 548 n n 
C13 H19 Y8F sing 549 n n 
C14 H20 Y8F sing 550 n n 
C14 H21 Y8F sing 551 n n 
C15 H22 Y8F sing 552 n n 
C15 H23 Y8F sing 553 n n 
C15 H24 Y8F sing 554 n n 
C16 H25 Y8F sing 555 n n 
C16 H26 Y8F sing 556 n n 
C18 H27 Y8F sing 557 n n 
C18 H28 Y8F sing 558 n n 
C19 H29 Y8F sing 559 n n 
C19 H30 Y8F sing 560 n n 
C20 H31 Y8F sing 561 n n 
C20 H32 Y8F sing 562 n n 
C21 H33 Y8F sing 563 n n 
C21 H34 Y8F sing 564 n n 
C22 H35 Y8F sing 565 n n 
C22 H36 Y8F sing 566 n n 
C23 H37 Y8F sing 567 n n 
C23 H38 Y8F sing 568 n n 
C24 H39 Y8F sing 569 n n 
C24 H40 Y8F sing 570 n n 
C25 H41 Y8F sing 571 n n 
C25 H42 Y8F sing 572 n n 
C26 H43 Y8F sing 573 n n 
C26 H44 Y8F sing 574 n n 
C27 H45 Y8F sing 575 n n 
C27 H46 Y8F sing 576 n n 
C28 H47 Y8F sing 577 n n 
C28 H48 Y8F sing 578 n n 
C28 H49 Y8F sing 579 n n 
C7 H50 Y8F sing 580 n n 
C7 H51 Y8F sing 581 n n 
C8 H52 Y8F sing 582 n n 
C8 H53 Y8F sing 583 n n 
C9 H54 Y8F sing 584 n n 
C9 H55 Y8F sing 585 n n 
#
_atom_sites.entry_id                     8X6X 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 Y86 A 1 601 601 Y86 LIG . 
D 3 Y8F A 1 602 1 Y8F LIP . 
E 2 Y86 B 1 601 601 Y86 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 Y8F . . . D 3 168.957 166.895 182.908 1 68.57 ? C1 Y8F 602 A 1 
HETATM 2 C C2 Y8F . . . D 3 169.751 165.731 182.354 1 68.57 ? C2 Y8F 602 A 1 
HETATM 3 C C3 Y8F . . . D 3 168.57 167.744 185.139 1 68.57 ? C3 Y8F 602 A 1 
HETATM 4 C C4 Y8F . . . D 3 169.167 167.792 186.513 1 68.57 ? C4 Y8F 602 A 1 
HETATM 5 C C5 Y8F . . . D 3 168.334 167.149 187.604 1 68.57 ? C5 Y8F 602 A 1 
HETATM 6 C C6 Y8F . . . D 3 167.057 167.913 187.888 1 68.57 ? C6 Y8F 602 A 1 
HETATM 7 P P1 Y8F . . . D 3 169.755 163.107 182.199 1 68.57 ? P1 Y8F 602 A 1 
HETATM 8 O O1 Y8F . . . D 3 169.265 164.487 182.889 1 68.57 ? O1 Y8F 602 A 1 
HETATM 9 O O2 Y8F . . . D 3 171.271 163.104 182.302 1 68.57 ? O2 Y8F 602 A 1 
HETATM 10 O O3 Y8F . . . D 3 169.26 163.182 180.763 1 68.57 ? O3 Y8F 602 A 1 
HETATM 11 O O4 Y8F . . . D 3 169.101 161.989 182.995 1 68.57 ? O4 Y8F 602 A 1 
HETATM 12 O O5 Y8F . . . D 3 169.329 167.011 184.312 1 68.57 ? O5 Y8F 602 A 1 
HETATM 13 O O6 Y8F . . . D 3 167.547 168.279 184.797 1 68.57 ? O6 Y8F 602 A 1 
HETATM 14 O O7 Y8F . . . D 3 169.568 167.863 180.8 1 68.57 ? O7 Y8F 602 A 1 
HETATM 15 O O8 Y8F . . . D 3 167.378 167.798 180.317 1 68.57 ? O8 Y8F 602 A 1 
HETATM 16 C C10 Y8F . . . D 3 167.192 167.404 192.518 1 68.57 ? C10 Y8F 602 A 1 
HETATM 17 C C11 Y8F . . . D 3 166.717 167.695 193.936 1 68.57 ? C11 Y8F 602 A 1 
HETATM 18 C C12 Y8F . . . D 3 167.768 168.282 194.868 1 68.57 ? C12 Y8F 602 A 1 
HETATM 19 C C13 Y8F . . . D 3 167.233 168.682 196.237 1 68.57 ? C13 Y8F 602 A 1 
HETATM 20 C C14 Y8F . . . D 3 168.257 169.306 197.171 1 68.57 ? C14 Y8F 602 A 1 
HETATM 21 C C15 Y8F . . . D 3 167.693 169.748 198.504 1 68.57 ? C15 Y8F 602 A 1 
HETATM 22 C C16 Y8F . . . D 3 169.275 168.186 182.177 1 68.57 ? C16 Y8F 602 A 1 
HETATM 23 C C17 Y8F . . . D 3 168.524 167.614 179.998 1 68.57 ? C17 Y8F 602 A 1 
HETATM 24 C C18 Y8F . . . D 3 168.998 167.093 178.675 1 68.57 ? C18 Y8F 602 A 1 
HETATM 25 C C19 Y8F . . . D 3 168.683 167.967 177.48 1 68.57 ? C19 Y8F 602 A 1 
HETATM 26 C C20 Y8F . . . D 3 169.491 167.456 176.299 1 68.57 ? C20 Y8F 602 A 1 
HETATM 27 C C21 Y8F . . . D 3 169.408 168.204 174.977 1 68.57 ? C21 Y8F 602 A 1 
HETATM 28 C C22 Y8F . . . D 3 170.45 167.701 173.989 1 68.57 ? C22 Y8F 602 A 1 
HETATM 29 C C23 Y8F . . . D 3 170.507 168.435 172.657 1 68.57 ? C23 Y8F 602 A 1 
HETATM 30 C C24 Y8F . . . D 3 170.718 169.936 172.79 1 68.57 ? C24 Y8F 602 A 1 
HETATM 31 C C25 Y8F . . . D 3 170.996 170.641 171.47 1 68.57 ? C25 Y8F 602 A 1 
HETATM 32 C C26 Y8F . . . D 3 170.004 170.328 170.359 1 68.57 ? C26 Y8F 602 A 1 
HETATM 33 C C27 Y8F . . . D 3 170.266 171.111 169.086 1 68.57 ? C27 Y8F 602 A 1 
HETATM 34 C C28 Y8F . . . D 3 171.697 171 168.614 1 68.57 ? C28 Y8F 602 A 1 
HETATM 35 C C7 Y8F . . . D 3 166.726 168.036 189.369 1 68.57 ? C7 Y8F 602 A 1 
HETATM 36 C C8 Y8F . . . D 3 166.453 166.745 190.126 1 68.57 ? C8 Y8F 602 A 1 
HETATM 37 C C9 Y8F . . . D 3 166.073 166.96 191.586 1 68.57 ? C9 Y8F 602 A 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           37 
#