data_8X72 # _model_server_result.job_id GucgtawW7e5jl1ADy0dyaw _model_server_result.datetime_utc '2024-11-19 23:15:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8x72 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8X72 # _exptl.entry_id 8X72 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8X72 _cell.length_a 67.5 _cell.length_b 67.5 _cell.length_c 153.347 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8X72 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 81 A HIS 93 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc2 A SG CYS 200 A CYS 212 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc3 A SG CYS 243 A CYS 255 1_555 C ZN ZN . A ZN 402 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc4 C ZN ZN . A ZN 402 1_555 E O ACT . A ACT 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 19 n n PG O2G ANP sing 20 n n PG O3G ANP sing 21 n n PG N3B ANP sing 22 n n O2G HOG2 ANP sing 23 n n O3G HOG3 ANP sing 24 n n PB O1B ANP doub 25 n n PB O2B ANP sing 26 n n PB N3B ANP sing 27 n n PB O3A ANP sing 28 n n O2B HOB2 ANP sing 29 n n N3B HNB1 ANP sing 30 n n PA O1A ANP doub 31 n n PA O2A ANP sing 32 n n PA O3A ANP sing 33 n n PA O5' ANP sing 34 n n O2A HOA2 ANP sing 35 n n O5' C5' ANP sing 36 n n C5' C4' ANP sing 37 n n C5' "H5'1" ANP sing 38 n n C5' "H5'2" ANP sing 39 n n C4' O4' ANP sing 40 n n C4' C3' ANP sing 41 n n C4' H4' ANP sing 42 n n O4' C1' ANP sing 43 n n C3' O3' ANP sing 44 n n C3' C2' ANP sing 45 n n C3' H3' ANP sing 46 n n O3' HO3' ANP sing 47 n n C2' O2' ANP sing 48 n n C2' C1' ANP sing 49 n n C2' H2' ANP sing 50 n n O2' HO2' ANP sing 51 n n C1' N9 ANP sing 52 n n C1' H1' ANP sing 53 n n N9 C8 ANP sing 54 n y N9 C4 ANP sing 55 n y C8 N7 ANP doub 56 n y C8 H8 ANP sing 57 n n N7 C5 ANP sing 58 n y C5 C6 ANP sing 59 n y C5 C4 ANP doub 60 n y C6 N6 ANP sing 61 n n C6 N1 ANP doub 62 n y N6 HN61 ANP sing 63 n n N6 HN62 ANP sing 64 n n N1 C2 ANP sing 65 n y C2 N3 ANP doub 66 n y C2 H2 ANP sing 67 n n N3 C4 ANP sing 68 n y # _atom_sites.entry_id 8X72 _atom_sites.fract_transf_matrix[1][1] 0.014815 _atom_sites.fract_transf_matrix[1][2] 0.008553 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 401 1 ANP ANP . C 3 ZN A 1 402 1 ZN ZN . D 4 ACT A 1 403 1 ACT ACT . E 4 ACT A 1 404 2 ACT ACT . F 5 PEG A 1 405 3 PEG PEG . G 5 PEG A 1 406 4 PEG PEG . H 6 EDO A 1 407 5 EDO EDO . I 6 EDO A 1 408 6 EDO EDO . J 6 EDO A 1 409 7 EDO EDO . K 7 HOH A 1 501 57 HOH HOH . K 7 HOH A 2 502 149 HOH HOH . K 7 HOH A 3 503 63 HOH HOH . K 7 HOH A 4 504 148 HOH HOH . K 7 HOH A 5 505 156 HOH HOH . K 7 HOH A 6 506 43 HOH HOH . K 7 HOH A 7 507 130 HOH HOH . K 7 HOH A 8 508 122 HOH HOH . K 7 HOH A 9 509 39 HOH HOH . K 7 HOH A 10 510 81 HOH HOH . K 7 HOH A 11 511 146 HOH HOH . K 7 HOH A 12 512 45 HOH HOH . K 7 HOH A 13 513 38 HOH HOH . K 7 HOH A 14 514 32 HOH HOH . K 7 HOH A 15 515 82 HOH HOH . K 7 HOH A 16 516 147 HOH HOH . K 7 HOH A 17 517 41 HOH HOH . K 7 HOH A 18 518 161 HOH HOH . K 7 HOH A 19 519 60 HOH HOH . K 7 HOH A 20 520 91 HOH HOH . K 7 HOH A 21 521 13 HOH HOH . K 7 HOH A 22 522 10 HOH HOH . K 7 HOH A 23 523 169 HOH HOH . K 7 HOH A 24 524 119 HOH HOH . K 7 HOH A 25 525 61 HOH HOH . K 7 HOH A 26 526 27 HOH HOH . K 7 HOH A 27 527 37 HOH HOH . K 7 HOH A 28 528 8 HOH HOH . K 7 HOH A 29 529 29 HOH HOH . K 7 HOH A 30 530 72 HOH HOH . K 7 HOH A 31 531 75 HOH HOH . K 7 HOH A 32 532 83 HOH HOH . K 7 HOH A 33 533 168 HOH HOH . K 7 HOH A 34 534 126 HOH HOH . K 7 HOH A 35 535 79 HOH HOH . K 7 HOH A 36 536 16 HOH HOH . K 7 HOH A 37 537 55 HOH HOH . K 7 HOH A 38 538 42 HOH HOH . K 7 HOH A 39 539 56 HOH HOH . K 7 HOH A 40 540 20 HOH HOH . K 7 HOH A 41 541 14 HOH HOH . K 7 HOH A 42 542 33 HOH HOH . K 7 HOH A 43 543 162 HOH HOH . K 7 HOH A 44 544 109 HOH HOH . K 7 HOH A 45 545 62 HOH HOH . K 7 HOH A 46 546 2 HOH HOH . K 7 HOH A 47 547 167 HOH HOH . K 7 HOH A 48 548 15 HOH HOH . K 7 HOH A 49 549 54 HOH HOH . K 7 HOH A 50 550 154 HOH HOH . K 7 HOH A 51 551 96 HOH HOH . K 7 HOH A 52 552 165 HOH HOH . K 7 HOH A 53 553 95 HOH HOH . K 7 HOH A 54 554 97 HOH HOH . K 7 HOH A 55 555 155 HOH HOH . K 7 HOH A 56 556 173 HOH HOH . K 7 HOH A 57 557 6 HOH HOH . K 7 HOH A 58 558 114 HOH HOH . K 7 HOH A 59 559 71 HOH HOH . K 7 HOH A 60 560 107 HOH HOH . K 7 HOH A 61 561 7 HOH HOH . K 7 HOH A 62 562 84 HOH HOH . K 7 HOH A 63 563 131 HOH HOH . K 7 HOH A 64 564 47 HOH HOH . K 7 HOH A 65 565 18 HOH HOH . K 7 HOH A 66 566 117 HOH HOH . K 7 HOH A 67 567 49 HOH HOH . K 7 HOH A 68 568 74 HOH HOH . K 7 HOH A 69 569 132 HOH HOH . K 7 HOH A 70 570 78 HOH HOH . K 7 HOH A 71 571 19 HOH HOH . K 7 HOH A 72 572 177 HOH HOH . K 7 HOH A 73 573 12 HOH HOH . K 7 HOH A 74 574 35 HOH HOH . K 7 HOH A 75 575 104 HOH HOH . K 7 HOH A 76 576 23 HOH HOH . K 7 HOH A 77 577 77 HOH HOH . K 7 HOH A 78 578 101 HOH HOH . K 7 HOH A 79 579 171 HOH HOH . K 7 HOH A 80 580 136 HOH HOH . K 7 HOH A 81 581 64 HOH HOH . K 7 HOH A 82 582 21 HOH HOH . K 7 HOH A 83 583 102 HOH HOH . K 7 HOH A 84 584 142 HOH HOH . K 7 HOH A 85 585 59 HOH HOH . K 7 HOH A 86 586 139 HOH HOH . K 7 HOH A 87 587 170 HOH HOH . K 7 HOH A 88 588 105 HOH HOH . K 7 HOH A 89 589 73 HOH HOH . K 7 HOH A 90 590 51 HOH HOH . K 7 HOH A 91 591 53 HOH HOH . K 7 HOH A 92 592 1 HOH HOH . K 7 HOH A 93 593 34 HOH HOH . K 7 HOH A 94 594 25 HOH HOH . K 7 HOH A 95 595 80 HOH HOH . K 7 HOH A 96 596 113 HOH HOH . K 7 HOH A 97 597 26 HOH HOH . K 7 HOH A 98 598 150 HOH HOH . K 7 HOH A 99 599 30 HOH HOH . K 7 HOH A 100 600 68 HOH HOH . K 7 HOH A 101 601 28 HOH HOH . K 7 HOH A 102 602 93 HOH HOH . K 7 HOH A 103 603 58 HOH HOH . K 7 HOH A 104 604 4 HOH HOH . K 7 HOH A 105 605 125 HOH HOH . K 7 HOH A 106 606 3 HOH HOH . K 7 HOH A 107 607 110 HOH HOH . K 7 HOH A 108 608 127 HOH HOH . K 7 HOH A 109 609 11 HOH HOH . K 7 HOH A 110 610 65 HOH HOH . K 7 HOH A 111 611 67 HOH HOH . K 7 HOH A 112 612 143 HOH HOH . K 7 HOH A 113 613 174 HOH HOH . K 7 HOH A 114 614 5 HOH HOH . K 7 HOH A 115 615 158 HOH HOH . K 7 HOH A 116 616 17 HOH HOH . K 7 HOH A 117 617 111 HOH HOH . K 7 HOH A 118 618 134 HOH HOH . K 7 HOH A 119 619 90 HOH HOH . K 7 HOH A 120 620 76 HOH HOH . K 7 HOH A 121 621 153 HOH HOH . K 7 HOH A 122 622 152 HOH HOH . K 7 HOH A 123 623 163 HOH HOH . K 7 HOH A 124 624 70 HOH HOH . K 7 HOH A 125 625 40 HOH HOH . K 7 HOH A 126 626 135 HOH HOH . K 7 HOH A 127 627 124 HOH HOH . K 7 HOH A 128 628 120 HOH HOH . K 7 HOH A 129 629 103 HOH HOH . K 7 HOH A 130 630 159 HOH HOH . K 7 HOH A 131 631 140 HOH HOH . K 7 HOH A 132 632 89 HOH HOH . K 7 HOH A 133 633 144 HOH HOH . K 7 HOH A 134 634 69 HOH HOH . K 7 HOH A 135 635 157 HOH HOH . K 7 HOH A 136 636 22 HOH HOH . K 7 HOH A 137 637 164 HOH HOH . K 7 HOH A 138 638 92 HOH HOH . K 7 HOH A 139 639 24 HOH HOH . K 7 HOH A 140 640 86 HOH HOH . K 7 HOH A 141 641 88 HOH HOH . K 7 HOH A 142 642 85 HOH HOH . K 7 HOH A 143 643 160 HOH HOH . K 7 HOH A 144 644 116 HOH HOH . K 7 HOH A 145 645 66 HOH HOH . K 7 HOH A 146 646 100 HOH HOH . K 7 HOH A 147 647 48 HOH HOH . K 7 HOH A 148 648 94 HOH HOH . K 7 HOH A 149 649 137 HOH HOH . K 7 HOH A 150 650 112 HOH HOH . K 7 HOH A 151 651 50 HOH HOH . K 7 HOH A 152 652 145 HOH HOH . K 7 HOH A 153 653 118 HOH HOH . K 7 HOH A 154 654 44 HOH HOH . K 7 HOH A 155 655 9 HOH HOH . K 7 HOH A 156 656 52 HOH HOH . K 7 HOH A 157 657 151 HOH HOH . K 7 HOH A 158 658 115 HOH HOH . K 7 HOH A 159 659 36 HOH HOH . K 7 HOH A 160 660 172 HOH HOH . K 7 HOH A 161 661 133 HOH HOH . K 7 HOH A 162 662 129 HOH HOH . K 7 HOH A 163 663 108 HOH HOH . K 7 HOH A 164 664 138 HOH HOH . K 7 HOH A 165 665 98 HOH HOH . K 7 HOH A 166 666 176 HOH HOH . K 7 HOH A 167 667 166 HOH HOH . K 7 HOH A 168 668 121 HOH HOH . K 7 HOH A 169 669 175 HOH HOH . K 7 HOH A 170 670 46 HOH HOH . K 7 HOH A 171 671 106 HOH HOH . K 7 HOH A 172 672 123 HOH HOH . K 7 HOH A 173 673 87 HOH HOH . K 7 HOH A 174 674 128 HOH HOH . K 7 HOH A 175 675 141 HOH HOH . K 7 HOH A 176 676 31 HOH HOH . K 7 HOH A 177 677 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -26.685 29.381 -15.419 1 109.98 0 PG ANP 401 A 1 HETATM 2 O O1G ANP . . . B 2 -25.979 28.478 -16.4 1 110.26 0 O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . B 2 -25.683 30.409 -14.955 1 111.57 0 O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . B 2 -27.064 28.542 -14.222 1 99.63 0 O3G ANP 401 A 1 HETATM 5 P PB ANP . . . B 2 -29.112 29.59 -17.143 1 100.26 0 PB ANP 401 A 1 HETATM 6 O O1B ANP . . . B 2 -29.775 30.672 -17.943 1 91.53 0 O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . B 2 -28.613 28.368 -17.864 1 92.77 0 O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . B 2 -27.978 30.149 -16.085 1 103.08 0 N3B ANP 401 A 1 HETATM 9 P PA ANP . . . B 2 -30.74 29.193 -14.7 1 80.82 0 PA ANP 401 A 1 HETATM 10 O O1A ANP . . . B 2 -31.715 28.103 -14.391 1 78.78 0 O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . B 2 -29.478 29.232 -13.906 1 85.46 0 O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . B 2 -30.357 29.108 -16.255 1 90.37 0 O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . B 2 -31.481 30.625 -14.618 1 75.02 0 O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . B 2 -30.758 31.892 -14.662 1 63.49 0 C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . B 2 -30.824 32.6 -13.325 1 59.73 0 C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . B 2 -32.201 32.859 -12.935 1 56.4 0 O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . B 2 -30.235 31.86 -12.119 1 56.94 0 C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . B 2 -28.821 31.986 -12.074 1 58.15 0 O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . B 2 -30.933 32.592 -10.972 1 53.99 0 C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . B 2 -30.384 33.869 -10.725 1 54.84 0 O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . B 2 -32.346 32.7 -11.537 1 52.97 0 C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . B 2 -33.201 31.523 -11.279 1 48.82 0 N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . B 2 -33.4 30.433 -12.093 1 48.81 0 C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . B 2 -34.242 29.563 -11.588 1 47.93 0 N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . B 2 -34.622 30.109 -10.37 1 47.28 0 C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . B 2 -35.499 29.663 -9.359 1 45.83 0 C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . B 2 -36.186 28.524 -9.42 1 43.24 0 N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . B 2 -35.652 30.463 -8.273 1 46.72 0 N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . B 2 -34.955 31.608 -8.219 1 45.25 0 C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . B 2 -34.108 32.126 -9.108 1 45.57 0 N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . B 2 -33.982 31.316 -10.173 1 47.11 0 C4 ANP 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #