data_8X7L
#
_model_server_result.job_id            6JlXAOUTtjimBKGvYDSu2Q 
_model_server_result.datetime_utc      '2024-12-22 23:33:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8x7l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":201}' 
#
_entry.id    8X7L 
#
_exptl.entry_id    8X7L 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              872.878 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-azanyl-6-[[4-[4-[(~{E})-(8-azanyl-1-oxidanyl-5,7-disulfo-naphthalen-2-yl)diazenyl]-3-methyl-phenyl]-2-methyl-phenyl]diazenyl]-5-oxidanyl-naphthalene-1,3-disulfonic acid' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C34 H28 N6 O14 S4' 
_chem_comp.formula_weight    872.878 
_chem_comp.id                IZ8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-azanyl-6-[[4-[4-[(~{E})-(8-azanyl-1-oxidanyl-5,7-disulfo-naphthalen-2-yl)diazenyl]-3-methyl-phenyl]-2-methyl-phenyl]diazenyl]-5-oxidanyl-naphthalene-1,3-disulfonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O20 S18 IZ8 doub 132 n n 
O21 S18 IZ8 doub 133 n n 
S18 O19 IZ8 sing 134 n n 
S18 C17 IZ8 sing 135 n n 
N16 C15 IZ8 sing 136 n n 
O53 S52 IZ8 doub 137 n n 
O48 S46 IZ8 doub 138 n n 
O47 S46 IZ8 doub 139 n n 
C17 C15 IZ8 sing 140 n y 
C17 C22 IZ8 doub 141 n y 
C15 C14 IZ8 doub 142 n y 
O13 C12 IZ8 sing 143 n n 
S46 C45 IZ8 sing 144 n n 
S46 O49 IZ8 sing 145 n n 
C07 C06 IZ8 doub 146 n y 
C07 C08 IZ8 sing 147 n y 
O55 S52 IZ8 doub 148 n n 
C50 C45 IZ8 doub 149 n y 
C50 C51 IZ8 sing 150 n y 
C22 C23 IZ8 sing 151 n y 
S52 C51 IZ8 sing 152 n n 
S52 O54 IZ8 sing 153 n n 
C45 C43 IZ8 sing 154 n y 
C06 C05 IZ8 sing 155 n y 
C12 C14 IZ8 sing 156 n y 
C12 C11 IZ8 doub 157 n y 
C14 C28 IZ8 sing 158 n y 
C51 C56 IZ8 doub 159 n y 
C01 C02 IZ8 sing 160 n n 
C43 N44 IZ8 sing 161 n n 
C43 C42 IZ8 doub 162 n y 
C56 C42 IZ8 sing 163 n y 
C56 C57 IZ8 sing 164 n y 
C42 C40 IZ8 sing 165 n y 
N09 C08 IZ8 sing 166 n n 
N09 N10 IZ8 doub 167 n n 
O25 S24 IZ8 doub 168 n n 
C23 C28 IZ8 doub 169 n y 
C23 S24 IZ8 sing 170 n n 
C11 N10 IZ8 sing 171 n n 
C11 C30 IZ8 sing 172 n y 
C57 C58 IZ8 doub 173 n y 
C08 C31 IZ8 doub 174 n y 
C28 C29 IZ8 sing 175 n y 
C03 C02 IZ8 doub 176 n y 
C03 C04 IZ8 sing 177 n y 
C40 O41 IZ8 sing 178 n n 
C40 C39 IZ8 doub 179 n y 
C02 C36 IZ8 sing 180 n y 
C58 C39 IZ8 sing 181 n y 
C05 C04 IZ8 sing 182 n n 
C05 C33 IZ8 doub 183 n y 
C39 N38 IZ8 sing 184 n n 
C30 C29 IZ8 doub 185 n y 
C04 C34 IZ8 doub 186 n y 
S24 O27 IZ8 doub 187 n n 
S24 O26 IZ8 sing 188 n n 
N38 N37 IZ8 doub 189 n n 
C31 C33 IZ8 sing 190 n y 
C31 C32 IZ8 sing 191 n n 
C36 N37 IZ8 sing 192 n n 
C36 C35 IZ8 doub 193 n y 
C34 C35 IZ8 sing 194 n y 
C01 H1 IZ8 sing 195 n n 
C01 H2 IZ8 sing 196 n n 
C01 H3 IZ8 sing 197 n n 
C03 H4 IZ8 sing 198 n n 
C06 H5 IZ8 sing 199 n n 
C07 H6 IZ8 sing 200 n n 
O13 H7 IZ8 sing 201 n n 
N16 H8 IZ8 sing 202 n n 
N16 H9 IZ8 sing 203 n n 
C22 H10 IZ8 sing 204 n n 
C29 H11 IZ8 sing 205 n n 
C30 H12 IZ8 sing 206 n n 
C32 H13 IZ8 sing 207 n n 
C32 H14 IZ8 sing 208 n n 
C32 H15 IZ8 sing 209 n n 
C33 H16 IZ8 sing 210 n n 
C34 H17 IZ8 sing 211 n n 
C35 H18 IZ8 sing 212 n n 
O41 H21 IZ8 sing 213 n n 
N44 H22 IZ8 sing 214 n n 
N44 H23 IZ8 sing 215 n n 
C50 H24 IZ8 sing 216 n n 
C57 H25 IZ8 sing 217 n n 
C58 H26 IZ8 sing 218 n n 
O19 H27 IZ8 sing 219 n n 
O26 H28 IZ8 sing 220 n n 
O49 H19 IZ8 sing 221 n n 
O54 H20 IZ8 sing 222 n n 
#
_atom_sites.entry_id                     8X7L 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 2 IZ8 F 1 201 1 IZ8 EB . 
L 2 IZ8 H 1 201 1 IZ8 EB . 
M 2 IZ8 H 1 202 1 IZ8 EB . 
N 2 IZ8 I 1 201 1 IZ8 EB . 
O 2 IZ8 I 1 202 1 IZ8 EB . 
P 2 IZ8 I 1 203 1 IZ8 EB . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 IZ8 . . . N 2 123.148 75.847 105.454 1 20 ? C01 IZ8 201 I 1 
HETATM 2 C C02 IZ8 . . . N 2 122.186 74.688 105.711 1 20 ? C02 IZ8 201 I 1 
HETATM 3 C C03 IZ8 . . . N 2 121.187 74.812 106.675 1 20 ? C03 IZ8 201 I 1 
HETATM 4 C C04 IZ8 . . . N 2 120.308 73.763 106.902 1 20 ? C04 IZ8 201 I 1 
HETATM 5 C C05 IZ8 . . . N 2 119.309 73.89 107.874 1 20 ? C05 IZ8 201 I 1 
HETATM 6 C C06 IZ8 . . . N 2 119.199 75.069 108.602 1 20 ? C06 IZ8 201 I 1 
HETATM 7 C C07 IZ8 . . . N 2 118.213 75.197 109.576 1 20 ? C07 IZ8 201 I 1 
HETATM 8 C C08 IZ8 . . . N 2 117.337 74.147 109.821 1 20 ? C08 IZ8 201 I 1 
HETATM 9 N N09 IZ8 . . . N 2 116.264 74.303 110.811 1 20 ? N09 IZ8 201 I 1 
HETATM 10 N N10 IZ8 . . . N 2 116.171 75.496 111.582 1 20 ? N10 IZ8 201 I 1 
HETATM 11 C C11 IZ8 . . . N 2 115.134 75.626 112.614 1 20 ? C11 IZ8 201 I 1 
HETATM 12 C C12 IZ8 . . . N 2 115.047 76.8 113.364 1 20 ? C12 IZ8 201 I 1 
HETATM 13 O O13 IZ8 . . . N 2 115.989 77.82 113.175 1 20 ? O13 IZ8 201 I 1 
HETATM 14 C C14 IZ8 . . . N 2 114.062 76.92 114.396 1 20 ? C14 IZ8 201 I 1 
HETATM 15 C C15 IZ8 . . . N 2 113.821 78.111 115.241 1 20 ? C15 IZ8 201 I 1 
HETATM 16 N N16 IZ8 . . . N 2 114.743 79.227 115.154 1 20 ? N16 IZ8 201 I 1 
HETATM 17 C C17 IZ8 . . . N 2 112.798 78.127 116.186 1 20 ? C17 IZ8 201 I 1 
HETATM 18 S S18 IZ8 . . . N 2 112.505 79.588 117.223 1 20 ? S18 IZ8 201 I 1 
HETATM 19 O O19 IZ8 . . . N 2 110.937 80.081 117.049 1 20 ? O19 IZ8 201 I 1 
HETATM 20 O O20 IZ8 . . . N 2 113.522 80.807 116.757 1 20 ? O20 IZ8 201 I 1 
HETATM 21 O O21 IZ8 . . . N 2 112.792 79.207 118.803 1 20 ? O21 IZ8 201 I 1 
HETATM 22 C C22 IZ8 . . . N 2 111.982 77.006 116.349 1 20 ? C22 IZ8 201 I 1 
HETATM 23 C C23 IZ8 . . . N 2 112.188 75.876 115.57 1 20 ? C23 IZ8 201 I 1 
HETATM 24 S S24 IZ8 . . . N 2 111.1 74.435 115.754 1 20 ? S24 IZ8 201 I 1 
HETATM 25 O O25 IZ8 . . . N 2 110.108 74.322 114.437 1 20 ? O25 IZ8 201 I 1 
HETATM 26 O O26 IZ8 . . . N 2 112.016 73.066 115.873 1 20 ? O26 IZ8 201 I 1 
HETATM 27 O O27 IZ8 . . . N 2 110.187 74.606 117.12 1 20 ? O27 IZ8 201 I 1 
HETATM 28 C C28 IZ8 . . . N 2 113.21 75.891 114.645 1 20 ? C28 IZ8 201 I 1 
HETATM 29 C C29 IZ8 . . . N 2 113.298 74.687 113.877 1 20 ? C29 IZ8 201 I 1 
HETATM 30 C C30 IZ8 . . . N 2 114.259 74.57 112.871 1 20 ? C30 IZ8 201 I 1 
HETATM 31 C C31 IZ8 . . . N 2 117.446 72.97 109.094 1 20 ? C31 IZ8 201 I 1 
HETATM 32 C C32 IZ8 . . . N 2 116.442 71.839 109.318 1 20 ? C32 IZ8 201 I 1 
HETATM 33 C C33 IZ8 . . . N 2 118.433 72.841 108.12 1 20 ? C33 IZ8 201 I 1 
HETATM 34 C C34 IZ8 . . . N 2 120.425 72.588 106.166 1 20 ? C34 IZ8 201 I 1 
HETATM 35 C C35 IZ8 . . . N 2 121.424 72.465 105.203 1 20 ? C35 IZ8 201 I 1 
HETATM 36 C C36 IZ8 . . . N 2 122.303 73.513 104.976 1 20 ? C36 IZ8 201 I 1 
HETATM 37 N N37 IZ8 . . . N 2 123.362 73.381 103.973 1 20 ? N37 IZ8 201 I 1 
HETATM 38 N N38 IZ8 . . . N 2 123.489 72.183 103.225 1 20 ? N38 IZ8 201 I 1 
HETATM 39 C C39 IZ8 . . . N 2 124.508 71.976 102.205 1 20 ? C39 IZ8 201 I 1 
HETATM 40 C C40 IZ8 . . . N 2 125.445 72.984 101.962 1 20 ? C40 IZ8 201 I 1 
HETATM 41 O O41 IZ8 . . . N 2 125.323 74.219 102.605 1 20 ? O41 IZ8 201 I 1 
HETATM 42 C C42 IZ8 . . . N 2 126.458 72.792 100.978 1 20 ? C42 IZ8 201 I 1 
HETATM 43 C C43 IZ8 . . . N 2 127.417 73.823 100.707 1 20 ? C43 IZ8 201 I 1 
HETATM 44 N N44 IZ8 . . . N 2 127.301 75.11 101.369 1 20 ? N44 IZ8 201 I 1 
HETATM 45 C C45 IZ8 . . . N 2 128.415 73.618 99.751 1 20 ? C45 IZ8 201 I 1 
HETATM 46 S S46 IZ8 . . . N 2 129.635 74.924 99.42 1 20 ? S46 IZ8 201 I 1 
HETATM 47 O O47 IZ8 . . . N 2 130.831 74.862 100.558 1 20 ? O47 IZ8 201 I 1 
HETATM 48 O O48 IZ8 . . . N 2 128.893 76.399 99.48 1 20 ? O48 IZ8 201 I 1 
HETATM 49 O O49 IZ8 . . . N 2 130.291 74.698 97.919 1 20 ? O49 IZ8 201 I 1 
HETATM 50 C C50 IZ8 . . . N 2 128.474 72.413 99.052 1 20 ? C50 IZ8 201 I 1 
HETATM 51 C C51 IZ8 . . . N 2 127.538 71.411 99.306 1 20 ? C51 IZ8 201 I 1 
HETATM 52 S S52 IZ8 . . . N 2 127.691 69.795 98.486 1 20 ? S52 IZ8 201 I 1 
HETATM 53 O O53 IZ8 . . . N 2 128.863 68.904 99.236 1 20 ? O53 IZ8 201 I 1 
HETATM 54 O O54 IZ8 . . . N 2 128.101 70.02 96.899 1 20 ? O54 IZ8 201 I 1 
HETATM 55 O O55 IZ8 . . . N 2 126.249 68.994 98.574 1 20 ? O55 IZ8 201 I 1 
HETATM 56 C C56 IZ8 . . . N 2 126.514 71.625 100.277 1 20 ? C56 IZ8 201 I 1 
HETATM 57 C C57 IZ8 . . . N 2 125.555 70.595 100.527 1 20 ? C57 IZ8 201 I 1 
HETATM 58 C C58 IZ8 . . . N 2 124.565 70.783 101.487 1 20 ? C58 IZ8 201 I 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           46 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           58 
#