data_8X83 # _model_server_result.job_id D8vocS20WXG1W1Uox19Xlw _model_server_result.datetime_utc '2024-10-18 05:24:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8x83 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 8X83 # _exptl.entry_id 8X83 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta-D-fructofuranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8X83 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8X83 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id FRU _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-fructose;D-fructose;fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FRU sing 83 n n C1 O1 FRU sing 84 n n C1 H11 FRU sing 85 n n C1 H12 FRU sing 86 n n C2 C3 FRU sing 87 n n C2 O2 FRU sing 88 n n C2 O5 FRU sing 89 n n C3 C4 FRU sing 90 n n C3 O3 FRU sing 91 n n C3 H3 FRU sing 92 n n C4 C5 FRU sing 93 n n C4 O4 FRU sing 94 n n C4 H4 FRU sing 95 n n C5 C6 FRU sing 96 n n C5 O5 FRU sing 97 n n C5 H5 FRU sing 98 n n C6 O6 FRU sing 99 n n C6 H61 FRU sing 100 n n C6 H62 FRU sing 101 n n O1 HO1 FRU sing 102 n n O2 HO2 FRU sing 103 n n O3 HO3 FRU sing 104 n n O4 HO4 FRU sing 105 n n O6 HO6 FRU sing 106 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version FRU DFrufb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 FRU b-D-fructofuranose 'COMMON NAME' GMML 1 FRU b-D-Fruf 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 FRU Fru 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8X83 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NA A 1 501 1 NA NA . F 2 NA A 1 502 2 NA NA . G 3 FRU A 1 503 504 FRU FRU . H 3 FRU B 1 501 505 FRU FRU . I 3 FRU C 1 501 506 FRU FRU . J 3 FRU D 1 501 507 FRU FRU . K 4 HOH A 1 601 4 HOH HOH . L 4 HOH B 1 601 1 HOH HOH . M 4 HOH C 1 601 2 HOH HOH . N 4 HOH D 1 601 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FRU . . . H 3 120.793 137.145 93.8 1 43.82 0 C1 FRU 501 B 1 HETATM 2 C C2 FRU . . . H 3 120.19 135.767 93.547 1 43.63 0 C2 FRU 501 B 1 HETATM 3 C C3 FRU . . . H 3 120.268 134.941 94.781 1 38.63 0 C3 FRU 501 B 1 HETATM 4 C C4 FRU . . . H 3 120.678 133.602 94.363 1 38.64 0 C4 FRU 501 B 1 HETATM 5 C C5 FRU . . . H 3 121.376 133.763 93.057 1 42.56 0 C5 FRU 501 B 1 HETATM 6 C C6 FRU . . . H 3 121.006 132.67 92.114 1 43.08 0 C6 FRU 501 B 1 HETATM 7 O O1 FRU . . . H 3 120.264 138.061 92.883 1 49.3 0 O1 FRU 501 B 1 HETATM 8 O O2 FRU . . . H 3 118.889 135.893 93.16 1 43.6 0 O2 FRU 501 B 1 HETATM 9 O O3 FRU . . . H 3 118.976 134.888 95.423 1 35.76 0 O3 FRU 501 B 1 HETATM 10 O O4 FRU . . . H 3 121.577 133.035 95.341 1 39.34 0 O4 FRU 501 B 1 HETATM 11 O O5 FRU . . . H 3 120.966 135.072 92.488 1 46.14 0 O5 FRU 501 B 1 HETATM 12 O O6 FRU . . . H 3 119.613 132.596 91.982 1 49.6 0 O6 FRU 501 B 1 HETATM 13 H H11 FRU . . . H 3 121.755 137.1 93.692 1 41.06 0 H11 FRU 501 B 1 HETATM 14 H H12 FRU . . . H 3 120.581 137.432 94.701 1 41.6 0 H12 FRU 501 B 1 HETATM 15 H H3 FRU . . . H 3 120.928 135.311 95.386 1 40.81 0 H3 FRU 501 B 1 HETATM 16 H H4 FRU . . . H 3 119.897 133.037 94.262 1 40.78 0 H4 FRU 501 B 1 HETATM 17 H H5 FRU . . . H 3 122.334 133.76 93.203 1 41.24 0 H5 FRU 501 B 1 HETATM 18 H H61 FRU . . . H 3 121.401 132.849 91.248 1 41.05 0 H61 FRU 501 B 1 HETATM 19 H H62 FRU . . . H 3 121.343 131.827 92.45 1 41.29 0 H62 FRU 501 B 1 HETATM 20 H HO1 FRU . . . H 3 120.127 138.804 93.273 1 42.26 0 HO1 FRU 501 B 1 HETATM 21 H HO2 FRU . . . H 3 118.611 135.149 92.858 1 41.24 0 HO2 FRU 501 B 1 HETATM 22 H HO3 FRU . . . H 3 118.995 134.313 96.048 1 40.48 0 HO3 FRU 501 B 1 HETATM 23 H HO4 FRU . . . H 3 121.358 132.228 95.49 1 41.42 0 HO4 FRU 501 B 1 HETATM 24 H HO6 FRU . . . H 3 119.342 133.229 91.485 1 41.63 0 HO6 FRU 501 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #