data_8X8I
#
_model_server_result.job_id            jT1jNQJJsYYJmrG6JZ3FeQ 
_model_server_result.datetime_utc      '2024-11-28 08:02:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8x8i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    8X8I 
#
_exptl.entry_id    8X8I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.72 
_cell.angle_gamma         90 
_cell.entry_id            8X8I 
_cell.length_a            71.055 
_cell.length_b            57.23 
_cell.length_c            143.671 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8X8I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 277 n n 
N HN1 SAM sing 278 n n 
N HN2 SAM sing 279 n n 
CA C SAM sing 280 n n 
CA CB SAM sing 281 n n 
CA HA SAM sing 282 n n 
C O SAM doub 283 n n 
C OXT SAM sing 284 n n 
CB CG SAM sing 285 n n 
CB HB1 SAM sing 286 n n 
CB HB2 SAM sing 287 n n 
CG SD SAM sing 288 n n 
CG HG1 SAM sing 289 n n 
CG HG2 SAM sing 290 n n 
SD CE SAM sing 291 n n 
SD C5' SAM sing 292 n n 
CE HE1 SAM sing 293 n n 
CE HE2 SAM sing 294 n n 
CE HE3 SAM sing 295 n n 
C5' C4' SAM sing 296 n n 
C5' "H5'1" SAM sing 297 n n 
C5' "H5'2" SAM sing 298 n n 
C4' O4' SAM sing 299 n n 
C4' C3' SAM sing 300 n n 
C4' H4' SAM sing 301 n n 
O4' C1' SAM sing 302 n n 
C3' O3' SAM sing 303 n n 
C3' C2' SAM sing 304 n n 
C3' H3' SAM sing 305 n n 
O3' HO3' SAM sing 306 n n 
C2' O2' SAM sing 307 n n 
C2' C1' SAM sing 308 n n 
C2' H2' SAM sing 309 n n 
O2' HO2' SAM sing 310 n n 
C1' N9 SAM sing 311 n n 
C1' H1' SAM sing 312 n n 
N9 C8 SAM sing 313 n y 
N9 C4 SAM sing 314 n y 
C8 N7 SAM doub 315 n y 
C8 H8 SAM sing 316 n n 
N7 C5 SAM sing 317 n y 
C5 C6 SAM sing 318 n y 
C5 C4 SAM doub 319 n y 
C6 N6 SAM sing 320 n n 
C6 N1 SAM doub 321 n y 
N6 HN61 SAM sing 322 n n 
N6 HN62 SAM sing 323 n n 
N1 C2 SAM sing 324 n y 
C2 N3 SAM doub 325 n y 
C2 H2 SAM sing 326 n n 
N3 C4 SAM sing 327 n y 
#
_atom_sites.entry_id                     8X8I 
_atom_sites.fract_transf_matrix[1][1]    0.014074 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002921 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017473 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007109 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SAM A 1 301 301 SAM SAM . 
F 2 SAM B 1 301 302 SAM SAM . 
G 2 SAM C 1 301 303 SAM SAM . 
H 2 SAM D 1 301 304 SAM SAM . 
I 3 HOH A 1 401 12 HOH HOH . 
I 3 HOH A 2 402 14 HOH HOH . 
I 3 HOH A 3 403 22 HOH HOH . 
I 3 HOH A 4 404 18 HOH HOH . 
I 3 HOH A 5 405 32 HOH HOH . 
I 3 HOH A 6 406 27 HOH HOH . 
J 3 HOH B 1 401 13 HOH HOH . 
J 3 HOH B 2 402 5 HOH HOH . 
J 3 HOH B 3 403 7 HOH HOH . 
J 3 HOH B 4 404 23 HOH HOH . 
J 3 HOH B 5 405 6 HOH HOH . 
J 3 HOH B 6 406 26 HOH HOH . 
J 3 HOH B 7 407 24 HOH HOH . 
J 3 HOH B 8 408 16 HOH HOH . 
K 3 HOH C 1 401 10 HOH HOH . 
K 3 HOH C 2 402 1 HOH HOH . 
K 3 HOH C 3 403 11 HOH HOH . 
K 3 HOH C 4 404 17 HOH HOH . 
K 3 HOH C 5 405 9 HOH HOH . 
K 3 HOH C 6 406 8 HOH HOH . 
K 3 HOH C 7 407 21 HOH HOH . 
L 3 HOH D 1 401 4 HOH HOH . 
L 3 HOH D 2 402 3 HOH HOH . 
L 3 HOH D 3 403 28 HOH HOH . 
L 3 HOH D 4 404 30 HOH HOH . 
L 3 HOH D 5 405 31 HOH HOH . 
L 3 HOH D 6 406 2 HOH HOH . 
L 3 HOH D 7 407 25 HOH HOH . 
L 3 HOH D 8 408 29 HOH HOH . 
L 3 HOH D 9 409 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . E 2 34.024 3.258 53.01 1 66.67 ? N SAM 301 A 1 
HETATM 2 C CA SAM . . . E 2 34.37 2.051 53.748 1 66.76 ? CA SAM 301 A 1 
HETATM 3 C C SAM . . . E 2 34.974 2.408 55.107 1 69.62 ? C SAM 301 A 1 
HETATM 4 O O SAM . . . E 2 34.532 1.896 56.138 1 70.88 ? O SAM 301 A 1 
HETATM 5 O OXT SAM . . . E 2 35.896 3.222 55.215 1 69.61 ? OXT SAM 301 A 1 
HETATM 6 C CB SAM . . . E 2 35.323 1.195 52.918 1 64.43 ? CB SAM 301 A 1 
HETATM 7 C CG SAM . . . E 2 36.771 1.659 52.819 1 62.03 ? CG SAM 301 A 1 
HETATM 8 S SD SAM . . . E 2 37.815 0.329 52.163 1 60.05 ? SD SAM 301 A 1 
HETATM 9 C CE SAM . . . E 2 39.003 0.092 53.508 1 61.22 ? CE SAM 301 A 1 
HETATM 10 C C5' SAM . . . E 2 38.804 1.244 50.95 1 55.23 ? C5' SAM 301 A 1 
HETATM 11 C C4' SAM . . . E 2 38.11 1.313 49.594 1 51.15 ? C4' SAM 301 A 1 
HETATM 12 O O4' SAM . . . E 2 38.824 2.146 48.701 1 48.75 ? O4' SAM 301 A 1 
HETATM 13 C C3' SAM . . . E 2 38.008 -0.054 48.927 1 50.52 ? C3' SAM 301 A 1 
HETATM 14 O O3' SAM . . . E 2 36.667 -0.468 48.893 1 52.58 ? O3' SAM 301 A 1 
HETATM 15 C C2' SAM . . . E 2 38.505 0.151 47.513 1 48.61 ? C2' SAM 301 A 1 
HETATM 16 O O2' SAM . . . E 2 37.582 -0.344 46.574 1 48.52 ? O2' SAM 301 A 1 
HETATM 17 C C1' SAM . . . E 2 38.632 1.66 47.389 1 47.89 ? C1' SAM 301 A 1 
HETATM 18 N N9 SAM . . . E 2 39.748 2.003 46.494 1 46.05 ? N9 SAM 301 A 1 
HETATM 19 C C8 SAM . . . E 2 41.02 1.498 46.536 1 45.82 ? C8 SAM 301 A 1 
HETATM 20 N N7 SAM . . . E 2 41.732 2.059 45.532 1 45.74 ? N7 SAM 301 A 1 
HETATM 21 C C5 SAM . . . E 2 40.929 2.907 44.85 1 44.1 ? C5 SAM 301 A 1 
HETATM 22 C C6 SAM . . . E 2 41.146 3.721 43.748 1 42.05 ? C6 SAM 301 A 1 
HETATM 23 N N6 SAM . . . E 2 42.342 3.761 43.17 1 42.78 ? N6 SAM 301 A 1 
HETATM 24 N N1 SAM . . . E 2 40.111 4.492 43.258 1 40.91 ? N1 SAM 301 A 1 
HETATM 25 C C2 SAM . . . E 2 38.871 4.454 43.862 1 38.76 ? C2 SAM 301 A 1 
HETATM 26 N N3 SAM . . . E 2 38.664 3.64 44.956 1 40.02 ? N3 SAM 301 A 1 
HETATM 27 C C4 SAM . . . E 2 39.676 2.879 45.442 1 43.69 ? C4 SAM 301 A 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#