data_8X91 # _model_server_result.job_id V3S3klv1ECabuOn38kAJNA _model_server_result.datetime_utc '2024-10-28 02:27:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8x91 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1201}' # _entry.id 8X91 # _exptl.entry_id 8X91 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8X91 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8X91 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 J N N ? 8 O N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 7 3 2 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 7 4 3 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG E 1 NAG 5 n E NAG 2 E 2 NAG E 2 NAG 5 n E NAG 3 E 3 NAG E 3 NAG 6 n F NAG 1 F 1 NAG F 1 NAG 6 n F NAG 2 F 2 NAG F 2 NAG 7 n G NAG 1 G 1 NAG G 1 NAG 7 n G NAG 2 G 2 NAG G 2 NAG 7 n G NAG 3 G 3 NAG G 3 NAG 7 n G NAG 4 G 4 NAG G 4 NAG 6 n H NAG 1 H 1 NAG H 1 NAG 6 n H NAG 2 H 2 NAG H 2 NAG 6 n I NAG 1 I 1 NAG I 1 NAG 6 n I NAG 2 I 2 NAG I 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 1 X CYS 1 1_555 B SG CYS 16 X CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 8 X CYS 8 1_555 B SG CYS 20 X CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 15 X CYS 15 1_555 B SG CYS 26 X CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 C SG CYS 303 B CYS 303 1_555 C SG CYS 1044 B CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 354 B CYS 354 1_555 C SG CYS 1059 B CYS 1059 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 C SG CYS 404 B CYS 404 1_555 C SG CYS 1071 B CYS 1071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 C SG CYS 667 B CYS 667 1_555 C SG CYS 697 B CYS 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 C SG CYS 834 B CYS 834 1_555 C SG CYS 839 B CYS 839 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 C SG CYS 841 B CYS 841 1_555 C SG CYS 850 B CYS 850 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 C SG CYS 904 B CYS 904 1_555 C SG CYS 974 B CYS 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 C SG CYS 996 B CYS 996 1_555 C SG CYS 1026 B CYS 1026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 C SG CYS 999 B CYS 999 1_555 C SG CYS 1024 B CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 D SG CYS 299 A CYS 256 1_555 D SG CYS 324 A CYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 D SG CYS 315 A CYS 272 1_555 D SG CYS 330 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 D SG CYS 1448 A CYS 1405 1_555 D SG CYS 1459 A CYS 1416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf16 D SG CYS 1813 A CYS 1770 1_555 D SG CYS 1824 A CYS 1781 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 C ND2 ASN 92 B ASN 92 1_555 J C1 NAG . B NAG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 C ND2 ASN 184 B ASN 184 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale3 C ND2 ASN 348 B ASN 348 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 C ND2 ASN 468 B ASN 468 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale5 C ND2 ASN 613 B ASN 613 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 C ND2 ASN 895 B ASN 895 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale7 D ND2 ASN 326 A ASN 283 1_555 O C1 NAG . A NAG 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale9 E O4 NAG . E NAG 2 1_555 E C1 NAG . E NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale10 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale11 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale12 G O4 NAG . G NAG 2 1_555 G C1 NAG . G NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale13 G O4 NAG . G NAG 3 1_555 G C1 NAG . G NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale14 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale15 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? metalc ? metalc1 C OG SER 261 B SER 261 1_555 K CA CA . B CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc2 C OG SER 263 B SER 263 1_555 K CA CA . B CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc3 C OG1 THR 331 B THR 331 1_555 K CA CA . B CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? metalc ? metalc4 K CA CA . B CA 1202 1_555 D OD2 ASP 168 A ASP 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc5 D OE1 GLU 361 A GLU 318 1_555 N CA CA . A CA 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.186 ? metalc ? metalc6 D OE2 GLU 361 A GLU 318 1_555 N CA CA . A CA 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc7 D OE1 GLU 710 A GLU 667 1_555 N CA CA . A CA 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.019 ? metalc ? metalc8 D OE1 GLU 1502 A GLU 1459 1_555 N CA CA . A CA 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 444 n n C1 O1 NAG sing 445 n n C1 O5 NAG sing 446 n n C1 H1 NAG sing 447 n n C2 C3 NAG sing 448 n n C2 N2 NAG sing 449 n n C2 H2 NAG sing 450 n n C3 C4 NAG sing 451 n n C3 O3 NAG sing 452 n n C3 H3 NAG sing 453 n n C4 C5 NAG sing 454 n n C4 O4 NAG sing 455 n n C4 H4 NAG sing 456 n n C5 C6 NAG sing 457 n n C5 O5 NAG sing 458 n n C5 H5 NAG sing 459 n n C6 O6 NAG sing 460 n n C6 H61 NAG sing 461 n n C6 H62 NAG sing 462 n n C7 C8 NAG sing 463 n n C7 N2 NAG sing 464 n n C7 O7 NAG doub 465 n n C8 H81 NAG sing 466 n n C8 H82 NAG sing 467 n n C8 H83 NAG sing 468 n n N2 HN2 NAG sing 469 n n O1 HO1 NAG sing 470 n n O3 HO3 NAG sing 471 n n O4 HO4 NAG sing 472 n n O6 HO6 NAG sing 473 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8X91 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 8 NAG B 1 1201 1 NAG NAG . K 9 CA B 1 1202 2 CA CA . L 10 CLR A 1 2601 2508 CLR CLR . M 11 PT5 A 1 2602 2509 PT5 PT5 . N 9 CA A 1 2603 2510 CA CA . O 8 NAG A 1 2604 2511 NAG NAG . P 12 Y01 A 1 2605 2512 Y01 Y01 . Q 10 CLR A 1 2606 2513 CLR CLR . R 10 CLR A 1 2607 2514 CLR CLR . S 12 Y01 A 1 2608 2515 Y01 Y01 . T 12 Y01 A 1 2609 2516 Y01 Y01 . U 10 CLR A 1 2610 2517 CLR CLR . V 10 CLR A 1 2611 2518 CLR CLR . W 13 3PE A 1 2612 2519 3PE 3PE . X 13 3PE A 1 2613 2520 3PE 3PE . Y 9 CA A 1 2614 1 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 8 141.922 141.932 241.146 1 92.91 ? C1 NAG 1201 B 1 HETATM 2 C C2 NAG . . . J 8 141.094 143.049 241.783 1 92.91 ? C2 NAG 1201 B 1 HETATM 3 C C3 NAG . . . J 8 139.869 142.471 242.486 1 92.91 ? C3 NAG 1201 B 1 HETATM 4 C C4 NAG . . . J 8 139.067 141.605 241.524 1 92.91 ? C4 NAG 1201 B 1 HETATM 5 C C5 NAG . . . J 8 139.966 140.533 240.919 1 92.91 ? C5 NAG 1201 B 1 HETATM 6 C C6 NAG . . . J 8 139.269 139.702 239.868 1 92.91 ? C6 NAG 1201 B 1 HETATM 7 C C7 NAG . . . J 8 142.155 145.132 242.543 1 92.91 ? C7 NAG 1201 B 1 HETATM 8 C C8 NAG . . . J 8 141.572 145.767 241.317 1 92.91 ? C8 NAG 1201 B 1 HETATM 9 N N2 NAG . . . J 8 141.895 143.831 242.712 1 92.91 ? N2 NAG 1201 B 1 HETATM 10 O O3 NAG . . . J 8 139.06 143.534 242.975 1 92.91 ? O3 NAG 1201 B 1 HETATM 11 O O4 NAG . . . J 8 137.984 140.984 242.207 1 92.91 ? O4 NAG 1201 B 1 HETATM 12 O O5 NAG . . . J 8 141.089 141.151 240.274 1 92.91 ? O5 NAG 1201 B 1 HETATM 13 O O6 NAG . . . J 8 139.912 139.82 238.607 1 92.91 ? O6 NAG 1201 B 1 HETATM 14 O O7 NAG . . . J 8 142.832 145.768 243.344 1 92.91 ? O7 NAG 1201 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #