data_8X9E # _model_server_result.job_id Bh_jwwuuPE11Z0f-Yjm1MA _model_server_result.datetime_utc '2024-11-15 14:56:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8x9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 8X9E # _exptl.entry_id 8X9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.333 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE(4)-NI(1)-S(4) CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.39 _cell.angle_gamma 90 _cell.entry_id 8X9E _cell.length_a 112.083 _cell.length_b 75.088 _cell.length_c 71.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8X9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 59 A CYS 39 1_555 C FE2 FES . A FES 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc2 A SG CYS 67 A CYS 47 1_555 C FE1 FES . A FES 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc3 A SG CYS 68 A CYS 48 1_555 B FE2 SF4 . A SF4 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc4 A SG CYS 76 A CYS 56 1_555 B FE3 SF4 . A SF4 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc5 A SG CYS 90 A CYS 70 1_555 B FE1 SF4 . A SF4 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc6 A NE2 HIS 281 A HIS 261 1_555 D FE2 XCC . A XCC 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc7 A SG CYS 314 A CYS 294 1_555 E FE FE . A FE 704 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc8 A SG CYS 314 A CYS 294 1_555 E FE FE . A FE 704 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc9 A SG CYS 353 A CYS 333 1_555 D FE4 XCC . A XCC 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc10 A SG CYS 466 A CYS 446 1_555 D FE3 XCC . A XCC 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc11 A SG CYS 496 A CYS 476 1_555 D FE1 XCC . A XCC 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc12 A SG CYS 496 A CYS 476 1_555 E FE FE . A FE 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc13 A SG CYS 546 A CYS 526 1_555 D NI XCC . A XCC 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc14 D S3 XCC . A XCC 703 1_555 E FE FE . A FE 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? # _chem_comp.formula 'Fe4 Ni S4' _chem_comp.formula_weight 410.333 _chem_comp.id XCC _chem_comp.mon_nstd_flag . _chem_comp.name 'FE(4)-NI(1)-S(4) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'C CLUSTER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 XCC sing 401 n n FE1 S4 XCC sing 402 n n FE1 S3 XCC sing 403 n n FE2 S3 XCC sing 404 n n FE3 S1 XCC sing 405 n n FE3 S2 XCC sing 406 n n FE3 S4 XCC sing 407 n n FE4 S1 XCC sing 408 n n FE4 S2 XCC sing 409 n n FE4 S3 XCC sing 410 n n S1 NI XCC sing 411 n n # _atom_sites.entry_id 8X9E _atom_sites.fract_transf_matrix[1][1] 0.008922 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003495 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013318 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015097 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 701 638 SF4 SF4 . C 3 FES A 1 702 639 FES FES . D 4 XCC A 1 703 640 XCC XCC . E 5 FE A 1 704 641 FE FE . F 6 EDO A 1 705 642 EDO EDO . G 7 HOH A 1 801 25 HOH HOH . G 7 HOH A 2 802 18 HOH HOH . G 7 HOH A 3 803 30 HOH HOH . G 7 HOH A 4 804 14 HOH HOH . G 7 HOH A 5 805 10 HOH HOH . G 7 HOH A 6 806 75 HOH HOH . G 7 HOH A 7 807 54 HOH HOH . G 7 HOH A 8 808 8 HOH HOH . G 7 HOH A 9 809 31 HOH HOH . G 7 HOH A 10 810 7 HOH HOH . G 7 HOH A 11 811 12 HOH HOH . G 7 HOH A 12 812 74 HOH HOH . G 7 HOH A 13 813 51 HOH HOH . G 7 HOH A 14 814 49 HOH HOH . G 7 HOH A 15 815 66 HOH HOH . G 7 HOH A 16 816 88 HOH HOH . G 7 HOH A 17 817 4 HOH HOH . G 7 HOH A 18 818 53 HOH HOH . G 7 HOH A 19 819 13 HOH HOH . G 7 HOH A 20 820 22 HOH HOH . G 7 HOH A 21 821 17 HOH HOH . G 7 HOH A 22 822 23 HOH HOH . G 7 HOH A 23 823 35 HOH HOH . G 7 HOH A 24 824 58 HOH HOH . G 7 HOH A 25 825 5 HOH HOH . G 7 HOH A 26 826 32 HOH HOH . G 7 HOH A 27 827 56 HOH HOH . G 7 HOH A 28 828 116 HOH HOH . G 7 HOH A 29 829 52 HOH HOH . G 7 HOH A 30 830 113 HOH HOH . G 7 HOH A 31 831 85 HOH HOH . G 7 HOH A 32 832 37 HOH HOH . G 7 HOH A 33 833 9 HOH HOH . G 7 HOH A 34 834 11 HOH HOH . G 7 HOH A 35 835 24 HOH HOH . G 7 HOH A 36 836 76 HOH HOH . G 7 HOH A 37 837 55 HOH HOH . G 7 HOH A 38 838 19 HOH HOH . G 7 HOH A 39 839 3 HOH HOH . G 7 HOH A 40 840 79 HOH HOH . G 7 HOH A 41 841 43 HOH HOH . G 7 HOH A 42 842 16 HOH HOH . G 7 HOH A 43 843 96 HOH HOH . G 7 HOH A 44 844 1 HOH HOH . G 7 HOH A 45 845 34 HOH HOH . G 7 HOH A 46 846 115 HOH HOH . G 7 HOH A 47 847 28 HOH HOH . G 7 HOH A 48 848 59 HOH HOH . G 7 HOH A 49 849 117 HOH HOH . G 7 HOH A 50 850 46 HOH HOH . G 7 HOH A 51 851 118 HOH HOH . G 7 HOH A 52 852 61 HOH HOH . G 7 HOH A 53 853 112 HOH HOH . G 7 HOH A 54 854 84 HOH HOH . G 7 HOH A 55 855 91 HOH HOH . G 7 HOH A 56 856 87 HOH HOH . G 7 HOH A 57 857 64 HOH HOH . G 7 HOH A 58 858 104 HOH HOH . G 7 HOH A 59 859 86 HOH HOH . G 7 HOH A 60 860 77 HOH HOH . G 7 HOH A 61 861 40 HOH HOH . G 7 HOH A 62 862 63 HOH HOH . G 7 HOH A 63 863 38 HOH HOH . G 7 HOH A 64 864 29 HOH HOH . G 7 HOH A 65 865 36 HOH HOH . G 7 HOH A 66 866 47 HOH HOH . G 7 HOH A 67 867 69 HOH HOH . G 7 HOH A 68 868 81 HOH HOH . G 7 HOH A 69 869 110 HOH HOH . G 7 HOH A 70 870 48 HOH HOH . G 7 HOH A 71 871 67 HOH HOH . G 7 HOH A 72 872 42 HOH HOH . G 7 HOH A 73 873 2 HOH HOH . G 7 HOH A 74 874 41 HOH HOH . G 7 HOH A 75 875 111 HOH HOH . G 7 HOH A 76 876 57 HOH HOH . G 7 HOH A 77 877 103 HOH HOH . G 7 HOH A 78 878 50 HOH HOH . G 7 HOH A 79 879 20 HOH HOH . G 7 HOH A 80 880 6 HOH HOH . G 7 HOH A 81 881 90 HOH HOH . G 7 HOH A 82 882 27 HOH HOH . G 7 HOH A 83 883 109 HOH HOH . G 7 HOH A 84 884 15 HOH HOH . G 7 HOH A 85 885 21 HOH HOH . G 7 HOH A 86 886 71 HOH HOH . G 7 HOH A 87 887 44 HOH HOH . G 7 HOH A 88 888 70 HOH HOH . G 7 HOH A 89 889 108 HOH HOH . G 7 HOH A 90 890 60 HOH HOH . G 7 HOH A 91 891 82 HOH HOH . G 7 HOH A 92 892 68 HOH HOH . G 7 HOH A 93 893 89 HOH HOH . G 7 HOH A 94 894 65 HOH HOH . G 7 HOH A 95 895 95 HOH HOH . G 7 HOH A 96 896 102 HOH HOH . G 7 HOH A 97 897 83 HOH HOH . G 7 HOH A 98 898 106 HOH HOH . G 7 HOH A 99 899 105 HOH HOH . G 7 HOH A 100 900 97 HOH HOH . G 7 HOH A 101 901 98 HOH HOH . G 7 HOH A 102 902 93 HOH HOH . G 7 HOH A 103 903 99 HOH HOH . G 7 HOH A 104 904 80 HOH HOH . G 7 HOH A 105 905 107 HOH HOH . G 7 HOH A 106 906 33 HOH HOH . G 7 HOH A 107 907 62 HOH HOH . G 7 HOH A 108 908 101 HOH HOH . G 7 HOH A 109 909 39 HOH HOH . G 7 HOH A 110 910 92 HOH HOH . G 7 HOH A 111 911 73 HOH HOH . G 7 HOH A 112 912 78 HOH HOH . G 7 HOH A 113 913 72 HOH HOH . G 7 HOH A 114 914 26 HOH HOH . G 7 HOH A 115 915 94 HOH HOH . G 7 HOH A 116 916 100 HOH HOH . G 7 HOH A 117 917 45 HOH HOH . G 7 HOH A 118 918 119 HOH HOH . G 7 HOH A 119 919 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 XCC . . . D 4 11.809 -5.058 17.149 0.6 43.14 ? FE1 XCC 703 A 1 HETATM 2 FE FE2 XCC . . . D 4 10.739 -2.009 15.825 0.7 48.35 ? FE2 XCC 703 A 1 HETATM 3 FE FE3 XCC . . . D 4 11.574 -5.606 14.391 0.7 46.13 ? FE3 XCC 703 A 1 HETATM 4 FE FE4 XCC . . . D 4 9.637 -4.754 15.707 0.7 49.67 ? FE4 XCC 703 A 1 HETATM 5 S S1 XCC . . . D 4 10.186 -4.063 13.542 0.7 57.92 ? S1 XCC 703 A 1 HETATM 6 S S2 XCC . . . D 4 10.596 -6.814 16.204 0.7 44.81 ? S2 XCC 703 A 1 HETATM 7 S S4 XCC . . . D 4 13.145 -4.229 15.477 0.7 40.47 ? S4 XCC 703 A 1 HETATM 8 S S3 XCC . . . D 4 10.234 -3.43 17.495 0.7 43.77 ? S3 XCC 703 A 1 HETATM 9 NI NI XCC . . . D 4 12.007 -2.926 13.779 0.7 43.65 ? NI XCC 703 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 630 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 9 #