data_8X9F # _model_server_result.job_id 4WDr_bfzCJ1o131XMmmFEA _model_server_result.datetime_utc '2024-11-15 13:08:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8x9f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 8X9F # _exptl.entry_id 8X9F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.306 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ethyl-4-(1-ethylpyridin-1-ium-4-yl)pyridin-1-ium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.18 _cell.angle_gamma 90 _cell.entry_id 8X9F _cell.length_a 112.251 _cell.length_b 74.783 _cell.length_c 71.214 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8X9F _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 59 A CYS 39 1_555 C FE2 FES . A FES 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc2 A SG CYS 67 A CYS 47 1_555 C FE1 FES . A FES 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc3 A SG CYS 71 A CYS 51 1_555 B FE4 SF4 . A SF4 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc4 A NE2 HIS 281 A HIS 261 1_555 D FE2 XCC . A XCC 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.719 ? metalc ? metalc5 A SG CYS 353 A CYS 333 1_555 D FE4 XCC . A XCC 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc6 A SG CYS 466 A CYS 446 1_555 D FE3 XCC . A XCC 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc7 A SG CYS 496 A CYS 476 1_555 D FE1 XCC . A XCC 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc8 A SG CYS 546 A CYS 526 1_555 D NI XCC . A XCC 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? # _chem_comp.formula 'C14 H18 N2 2' _chem_comp.formula_weight 214.306 _chem_comp.id S8I _chem_comp.mon_nstd_flag . _chem_comp.name 1-ethyl-4-(1-ethylpyridin-1-ium-4-yl)pyridin-1-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C07 S8I sing 290 n n C07 N03 S8I sing 291 n n C15 N03 S8I doub 292 n y C15 C11 S8I sing 293 n y N03 C13 S8I sing 294 n y C11 C05 S8I doub 295 n y C13 C09 S8I doub 296 n y C05 C09 S8I sing 297 n y C05 C06 S8I sing 298 n n C12 C06 S8I doub 299 n y C12 C16 S8I sing 300 n y C06 C10 S8I sing 301 n y C16 N04 S8I doub 302 n y C10 C14 S8I doub 303 n y N04 C14 S8I sing 304 n y N04 C08 S8I sing 305 n n C08 C18 S8I sing 306 n n C10 H1 S8I sing 307 n n C11 H2 S8I sing 308 n n C13 H3 S8I sing 309 n n C14 H4 S8I sing 310 n n C07 H5 S8I sing 311 n n C07 H6 S8I sing 312 n n C08 H7 S8I sing 313 n n C08 H8 S8I sing 314 n n C09 H9 S8I sing 315 n n C12 H10 S8I sing 316 n n C15 H11 S8I sing 317 n n C16 H12 S8I sing 318 n n C17 H13 S8I sing 319 n n C17 H14 S8I sing 320 n n C17 H15 S8I sing 321 n n C18 H16 S8I sing 322 n n C18 H17 S8I sing 323 n n C18 H18 S8I sing 324 n n # _atom_sites.entry_id 8X9F _atom_sites.fract_transf_matrix[1][1] 0.008909 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003452 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013372 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015059 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 701 638 SF4 SF4 . C 3 FES A 1 702 639 FES FES . D 4 XCC A 1 703 640 XCC XCC . E 5 S8I A 1 704 641 S8I EV . F 6 EDO A 1 705 642 EDO EDO . G 7 HOH A 1 801 77 HOH HOH . G 7 HOH A 2 802 62 HOH HOH . G 7 HOH A 3 803 47 HOH HOH . G 7 HOH A 4 804 84 HOH HOH . G 7 HOH A 5 805 70 HOH HOH . G 7 HOH A 6 806 50 HOH HOH . G 7 HOH A 7 807 42 HOH HOH . G 7 HOH A 8 808 9 HOH HOH . G 7 HOH A 9 809 89 HOH HOH . G 7 HOH A 10 810 85 HOH HOH . G 7 HOH A 11 811 110 HOH HOH . G 7 HOH A 12 812 92 HOH HOH . G 7 HOH A 13 813 44 HOH HOH . G 7 HOH A 14 814 45 HOH HOH . G 7 HOH A 15 815 30 HOH HOH . G 7 HOH A 16 816 43 HOH HOH . G 7 HOH A 17 817 14 HOH HOH . G 7 HOH A 18 818 1 HOH HOH . G 7 HOH A 19 819 35 HOH HOH . G 7 HOH A 20 820 3 HOH HOH . G 7 HOH A 21 821 2 HOH HOH . G 7 HOH A 22 822 69 HOH HOH . G 7 HOH A 23 823 81 HOH HOH . G 7 HOH A 24 824 8 HOH HOH . G 7 HOH A 25 825 18 HOH HOH . G 7 HOH A 26 826 34 HOH HOH . G 7 HOH A 27 827 25 HOH HOH . G 7 HOH A 28 828 98 HOH HOH . G 7 HOH A 29 829 51 HOH HOH . G 7 HOH A 30 830 58 HOH HOH . G 7 HOH A 31 831 48 HOH HOH . G 7 HOH A 32 832 109 HOH HOH . G 7 HOH A 33 833 11 HOH HOH . G 7 HOH A 34 834 90 HOH HOH . G 7 HOH A 35 835 24 HOH HOH . G 7 HOH A 36 836 61 HOH HOH . G 7 HOH A 37 837 54 HOH HOH . G 7 HOH A 38 838 72 HOH HOH . G 7 HOH A 39 839 41 HOH HOH . G 7 HOH A 40 840 87 HOH HOH . G 7 HOH A 41 841 113 HOH HOH . G 7 HOH A 42 842 16 HOH HOH . G 7 HOH A 43 843 55 HOH HOH . G 7 HOH A 44 844 10 HOH HOH . G 7 HOH A 45 845 64 HOH HOH . G 7 HOH A 46 846 95 HOH HOH . G 7 HOH A 47 847 19 HOH HOH . G 7 HOH A 48 848 20 HOH HOH . G 7 HOH A 49 849 21 HOH HOH . G 7 HOH A 50 850 37 HOH HOH . G 7 HOH A 51 851 60 HOH HOH . G 7 HOH A 52 852 5 HOH HOH . G 7 HOH A 53 853 46 HOH HOH . G 7 HOH A 54 854 13 HOH HOH . G 7 HOH A 55 855 114 HOH HOH . G 7 HOH A 56 856 28 HOH HOH . G 7 HOH A 57 857 115 HOH HOH . G 7 HOH A 58 858 27 HOH HOH . G 7 HOH A 59 859 7 HOH HOH . G 7 HOH A 60 860 12 HOH HOH . G 7 HOH A 61 861 17 HOH HOH . G 7 HOH A 62 862 75 HOH HOH . G 7 HOH A 63 863 102 HOH HOH . G 7 HOH A 64 864 116 HOH HOH . G 7 HOH A 65 865 6 HOH HOH . G 7 HOH A 66 866 56 HOH HOH . G 7 HOH A 67 867 78 HOH HOH . G 7 HOH A 68 868 52 HOH HOH . G 7 HOH A 69 869 73 HOH HOH . G 7 HOH A 70 870 74 HOH HOH . G 7 HOH A 71 871 59 HOH HOH . G 7 HOH A 72 872 53 HOH HOH . G 7 HOH A 73 873 86 HOH HOH . G 7 HOH A 74 874 36 HOH HOH . G 7 HOH A 75 875 33 HOH HOH . G 7 HOH A 76 876 22 HOH HOH . G 7 HOH A 77 877 76 HOH HOH . G 7 HOH A 78 878 63 HOH HOH . G 7 HOH A 79 879 29 HOH HOH . G 7 HOH A 80 880 15 HOH HOH . G 7 HOH A 81 881 83 HOH HOH . G 7 HOH A 82 882 82 HOH HOH . G 7 HOH A 83 883 26 HOH HOH . G 7 HOH A 84 884 99 HOH HOH . G 7 HOH A 85 885 100 HOH HOH . G 7 HOH A 86 886 91 HOH HOH . G 7 HOH A 87 887 108 HOH HOH . G 7 HOH A 88 888 71 HOH HOH . G 7 HOH A 89 889 65 HOH HOH . G 7 HOH A 90 890 80 HOH HOH . G 7 HOH A 91 891 38 HOH HOH . G 7 HOH A 92 892 40 HOH HOH . G 7 HOH A 93 893 49 HOH HOH . G 7 HOH A 94 894 67 HOH HOH . G 7 HOH A 95 895 96 HOH HOH . G 7 HOH A 96 896 112 HOH HOH . G 7 HOH A 97 897 105 HOH HOH . G 7 HOH A 98 898 103 HOH HOH . G 7 HOH A 99 899 111 HOH HOH . G 7 HOH A 100 900 104 HOH HOH . G 7 HOH A 101 901 88 HOH HOH . G 7 HOH A 102 902 4 HOH HOH . G 7 HOH A 103 903 93 HOH HOH . G 7 HOH A 104 904 57 HOH HOH . G 7 HOH A 105 905 117 HOH HOH . G 7 HOH A 106 906 101 HOH HOH . G 7 HOH A 107 907 107 HOH HOH . G 7 HOH A 108 908 106 HOH HOH . G 7 HOH A 109 909 97 HOH HOH . G 7 HOH A 110 910 31 HOH HOH . G 7 HOH A 111 911 32 HOH HOH . G 7 HOH A 112 912 39 HOH HOH . G 7 HOH A 113 913 68 HOH HOH . G 7 HOH A 114 914 94 HOH HOH . G 7 HOH A 115 915 79 HOH HOH . G 7 HOH A 116 916 66 HOH HOH . G 7 HOH A 117 917 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 S8I . . . E 5 15.033 -22.223 3.439 1 50.47 ? C10 S8I 704 A 1 HETATM 2 C C11 S8I . . . E 5 13.263 -22.976 1.276 1 50.09 ? C11 S8I 704 A 1 HETATM 3 C C13 S8I . . . E 5 11.228 -24.733 1.738 1 50.15 ? C13 S8I 704 A 1 HETATM 4 C C14 S8I . . . E 5 15.886 -21.892 4.478 1 52.21 ? C14 S8I 704 A 1 HETATM 5 C C05 S8I . . . E 5 13.098 -23.501 2.513 1 50.44 ? C05 S8I 704 A 1 HETATM 6 C C06 S8I . . . E 5 14.042 -23.122 3.647 1 51.14 ? C06 S8I 704 A 1 HETATM 7 C C07 S8I . . . E 5 10.491 -24.584 -0.568 1 49.4 ? C07 S8I 704 A 1 HETATM 8 C C08 S8I . . . E 5 16.614 -22.137 6.787 1 52.33 ? C08 S8I 704 A 1 HETATM 9 C C09 S8I . . . E 5 12.097 -24.369 2.753 1 50.45 ? C09 S8I 704 A 1 HETATM 10 C C12 S8I . . . E 5 13.885 -23.702 4.861 1 51.13 ? C12 S8I 704 A 1 HETATM 11 C C15 S8I . . . E 5 12.396 -23.347 0.264 1 49.88 ? C15 S8I 704 A 1 HETATM 12 C C16 S8I . . . E 5 14.74 -23.37 5.896 1 51.17 ? C16 S8I 704 A 1 HETATM 13 C C17 S8I . . . E 5 11.029 -25.821 -1.28 1 49.62 ? C17 S8I 704 A 1 HETATM 14 C C18 S8I . . . E 5 17.962 -22.819 6.563 1 51.27 ? C18 S8I 704 A 1 HETATM 15 N N03 S8I . . . E 5 11.391 -24.211 0.505 1 49.71 ? N03 S8I 704 A 1 HETATM 16 N N04 S8I . . . E 5 15.726 -22.471 5.689 1 51.93 ? N04 S8I 704 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #