data_8XBE
#
_model_server_result.job_id            qvcL_ZzSFhEq6EtQZ7xUHQ 
_model_server_result.datetime_utc      '2024-10-11 00:29:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xbe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    8XBE 
#
_exptl.entry_id    8XBE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              551.65 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S})-2-azanyl-3-[[(2~{R})-1-ethoxy-3-[(~{Z})-octadec-9-enoyl]oxy-propan-2-yl]oxy-oxidanyl-phosphoryl]oxy-propanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8XBE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8XBE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 S CYS 22 1_555 A SG CYS 96 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 159 S CYS 147 1_555 A SG CYS 229 S CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 C SG CYS 107 C CYS 103 1_555 C SG CYS 118 C CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf4 E SG CYS 55 A CYS 46 1_555 E SG CYS 308 A CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 E SG CYS 136 A CYS 127 1_555 E SG CYS 213 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C26 H50 N O9 P' 
_chem_comp.formula_weight    551.65 
_chem_comp.id                KW0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S})-2-azanyl-3-[[(2~{R})-1-ethoxy-3-[(~{Z})-octadec-9-enoyl]oxy-propan-2-yl]oxy-oxidanyl-phosphoryl]oxy-propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 KW0 sing 171 n n 
C2 C3 KW0 sing 172 n n 
C3 C4 KW0 sing 173 n n 
C5 C4 KW0 sing 174 n n 
C5 C6 KW0 sing 175 n n 
C6 C7 KW0 sing 176 n n 
C7 C8 KW0 sing 177 n n 
C8 C9 KW0 sing 178 n n 
C9 C10 KW0 doub 179 z n 
C10 C11 KW0 sing 180 n n 
C11 C12 KW0 sing 181 n n 
C13 C12 KW0 sing 182 n n 
C13 C14 KW0 sing 183 n n 
C15 C16 KW0 sing 184 n n 
C15 C14 KW0 sing 185 n n 
C17 C16 KW0 sing 186 n n 
C17 C18 KW0 sing 187 n n 
O1 C18 KW0 doub 188 n n 
O9 C26 KW0 doub 189 n n 
C18 O2 KW0 sing 190 n n 
C26 O8 KW0 sing 191 n n 
C26 C25 KW0 sing 192 n n 
O2 C19 KW0 sing 193 n n 
C25 N1 KW0 sing 194 n n 
C25 C24 KW0 sing 195 n n 
C19 C20 KW0 sing 196 n n 
C24 O7 KW0 sing 197 n n 
O7 P1 KW0 sing 198 n n 
C20 C21 KW0 sing 199 n n 
C20 O4 KW0 sing 200 n n 
O3 C22 KW0 sing 201 n n 
O3 C21 KW0 sing 202 n n 
C23 C22 KW0 sing 203 n n 
O4 P1 KW0 sing 204 n n 
P1 O6 KW0 doub 205 n n 
P1 O5 KW0 sing 206 n n 
C12 H1 KW0 sing 207 n n 
C12 H2 KW0 sing 208 n n 
C11 H3 KW0 sing 209 n n 
C11 H4 KW0 sing 210 n n 
C1 H5 KW0 sing 211 n n 
C1 H6 KW0 sing 212 n n 
C1 H7 KW0 sing 213 n n 
C2 H8 KW0 sing 214 n n 
C2 H9 KW0 sing 215 n n 
C3 H10 KW0 sing 216 n n 
C3 H11 KW0 sing 217 n n 
C4 H12 KW0 sing 218 n n 
C4 H13 KW0 sing 219 n n 
C5 H14 KW0 sing 220 n n 
C5 H15 KW0 sing 221 n n 
C6 H16 KW0 sing 222 n n 
C6 H17 KW0 sing 223 n n 
C7 H18 KW0 sing 224 n n 
C7 H19 KW0 sing 225 n n 
C8 H20 KW0 sing 226 n n 
C8 H21 KW0 sing 227 n n 
C9 H22 KW0 sing 228 n n 
C10 H23 KW0 sing 229 n n 
C13 H24 KW0 sing 230 n n 
C13 H25 KW0 sing 231 n n 
C14 H26 KW0 sing 232 n n 
C14 H27 KW0 sing 233 n n 
C15 H28 KW0 sing 234 n n 
C15 H29 KW0 sing 235 n n 
C16 H30 KW0 sing 236 n n 
C16 H31 KW0 sing 237 n n 
C17 H32 KW0 sing 238 n n 
C17 H33 KW0 sing 239 n n 
C19 H34 KW0 sing 240 n n 
C19 H35 KW0 sing 241 n n 
C20 H36 KW0 sing 242 n n 
C21 H37 KW0 sing 243 n n 
C21 H38 KW0 sing 244 n n 
C22 H39 KW0 sing 245 n n 
C22 H40 KW0 sing 246 n n 
C23 H41 KW0 sing 247 n n 
C23 H42 KW0 sing 248 n n 
C23 H43 KW0 sing 249 n n 
O5 H44 KW0 sing 250 n n 
C24 H45 KW0 sing 251 n n 
C24 H46 KW0 sing 252 n n 
C25 H47 KW0 sing 253 n n 
N1 H48 KW0 sing 254 n n 
N1 H49 KW0 sing 255 n n 
O8 H51 KW0 sing 256 n n 
#
_atom_sites.entry_id                     8XBE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           KW0 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     401 
_pdbx_nonpoly_scheme.pdb_mon_id       KW0 
_pdbx_nonpoly_scheme.auth_mon_id      LPS 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C12 KW0 . . . F 6 143.526 104.852 120.649 1 103.49 ? C12 KW0 401 A 1 
HETATM 2 C C11 KW0 . . . F 6 142.74 105.1 119.398 1 103.49 ? C11 KW0 401 A 1 
HETATM 3 C C1 KW0 . . . F 6 137.511 102.489 112.334 1 103.49 ? C1 KW0 401 A 1 
HETATM 4 C C2 KW0 . . . F 6 138.652 102.461 113.321 1 103.49 ? C2 KW0 401 A 1 
HETATM 5 C C3 KW0 . . . F 6 138.793 103.733 114.116 1 103.49 ? C3 KW0 401 A 1 
HETATM 6 C C4 KW0 . . . F 6 139.933 103.725 115.103 1 103.49 ? C4 KW0 401 A 1 
HETATM 7 C C5 KW0 . . . F 6 140.089 105.008 115.878 1 103.49 ? C5 KW0 401 A 1 
HETATM 8 C C6 KW0 . . . F 6 138.886 105.383 116.705 1 103.49 ? C6 KW0 401 A 1 
HETATM 9 C C7 KW0 . . . F 6 139.041 106.68 117.488 1 103.49 ? C7 KW0 401 A 1 
HETATM 10 C C8 KW0 . . . F 6 140.199 106.692 118.436 1 103.49 ? C8 KW0 401 A 1 
HETATM 11 C C9 KW0 . . . F 6 140.247 105.476 119.305 1 103.49 ? C9 KW0 401 A 1 
HETATM 12 C C10 KW0 . . . F 6 141.296 104.737 119.563 1 103.49 ? C10 KW0 401 A 1 
HETATM 13 C C13 KW0 . . . F 6 144.998 105.22 120.586 1 103.49 ? C13 KW0 401 A 1 
HETATM 14 C C14 KW0 . . . F 6 145.272 106.646 120.185 1 103.49 ? C14 KW0 401 A 1 
HETATM 15 C C15 KW0 . . . F 6 146.602 107.176 120.661 1 103.49 ? C15 KW0 401 A 1 
HETATM 16 C C16 KW0 . . . F 6 147.115 108.372 119.871 1 103.49 ? C16 KW0 401 A 1 
HETATM 17 C C17 KW0 . . . F 6 148.215 109.105 120.572 1 103.49 ? C17 KW0 401 A 1 
HETATM 18 C C18 KW0 . . . F 6 149.18 108.212 121.296 1 103.49 ? C18 KW0 401 A 1 
HETATM 19 O O1 KW0 . . . F 6 149.829 107.33 120.8 1 103.49 ? O1 KW0 401 A 1 
HETATM 20 O O2 KW0 . . . F 6 149.249 108.534 122.583 1 103.49 ? O2 KW0 401 A 1 
HETATM 21 C C19 KW0 . . . F 6 150.062 107.684 123.419 1 103.49 ? C19 KW0 401 A 1 
HETATM 22 C C20 KW0 . . . F 6 150.07 108.266 124.814 1 103.49 ? C20 KW0 401 A 1 
HETATM 23 C C21 KW0 . . . F 6 150.751 107.373 125.825 1 103.49 ? C21 KW0 401 A 1 
HETATM 24 O O3 KW0 . . . F 6 150.058 106.132 125.874 1 103.49 ? O3 KW0 401 A 1 
HETATM 25 C C22 KW0 . . . F 6 150.633 105.204 126.783 1 103.49 ? C22 KW0 401 A 1 
HETATM 26 C C23 KW0 . . . F 6 152.003 104.858 126.38 1 103.49 ? C23 KW0 401 A 1 
HETATM 27 O O4 KW0 . . . F 6 150.801 109.538 124.754 1 103.49 ? O4 KW0 401 A 1 
HETATM 28 P P1 KW0 . . . F 6 150.816 110.599 125.96 1 103.49 ? P1 KW0 401 A 1 
HETATM 29 O O5 KW0 . . . F 6 149.401 111.024 126.239 1 103.49 ? O5 KW0 401 A 1 
HETATM 30 O O6 KW0 . . . F 6 151.674 110.068 127.075 1 103.49 ? O6 KW0 401 A 1 
HETATM 31 O O7 KW0 . . . F 6 151.596 111.839 125.305 1 103.49 ? O7 KW0 401 A 1 
HETATM 32 C C24 KW0 . . . F 6 152.991 111.684 124.955 1 103.49 ? C24 KW0 401 A 1 
HETATM 33 C C25 KW0 . . . F 6 153.428 112.901 124.169 1 103.49 ? C25 KW0 401 A 1 
HETATM 34 N N1 KW0 . . . F 6 153.053 114.139 124.904 1 103.49 ? N1 KW0 401 A 1 
HETATM 35 C C26 KW0 . . . F 6 152.824 112.922 122.76 1 103.49 ? C26 KW0 401 A 1 
HETATM 36 O O8 KW0 . . . F 6 151.581 112.97 122.673 1 103.49 ? O8 KW0 401 A 1 
HETATM 37 O O9 KW0 . . . F 6 153.619 112.884 121.8 1 103.49 ? O9 KW0 401 A 1 
#
_model_server_stats.io_time_ms              79 
_model_server_stats.parse_time_ms           102 
_model_server_stats.create_model_time_ms    95 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           37 
#