data_8XBG # _model_server_result.job_id EjT9PamlWkiFw8uilr1AYw _model_server_result.datetime_utc '2024-11-26 00:01:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xbg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8XBG # _exptl.entry_id 8XBG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 551.65 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-azanyl-3-[[(2~{R})-1-ethoxy-3-[(~{Z})-octadec-9-enoyl]oxy-propan-2-yl]oxy-oxidanyl-phosphoryl]oxy-propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XBG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 55 A CYS 46 1_555 A SG CYS 308 A CYS 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 A SG CYS 136 A CYS 127 1_555 A SG CYS 213 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? # _chem_comp.formula 'C26 H50 N O9 P' _chem_comp.formula_weight 551.65 _chem_comp.id KW0 _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-azanyl-3-[[(2~{R})-1-ethoxy-3-[(~{Z})-octadec-9-enoyl]oxy-propan-2-yl]oxy-oxidanyl-phosphoryl]oxy-propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 KW0 sing 171 n n C2 C3 KW0 sing 172 n n C3 C4 KW0 sing 173 n n C5 C4 KW0 sing 174 n n C5 C6 KW0 sing 175 n n C6 C7 KW0 sing 176 n n C7 C8 KW0 sing 177 n n C8 C9 KW0 sing 178 n n C9 C10 KW0 doub 179 z n C10 C11 KW0 sing 180 n n C11 C12 KW0 sing 181 n n C13 C12 KW0 sing 182 n n C13 C14 KW0 sing 183 n n C15 C16 KW0 sing 184 n n C15 C14 KW0 sing 185 n n C17 C16 KW0 sing 186 n n C17 C18 KW0 sing 187 n n O1 C18 KW0 doub 188 n n O9 C26 KW0 doub 189 n n C18 O2 KW0 sing 190 n n C26 O8 KW0 sing 191 n n C26 C25 KW0 sing 192 n n O2 C19 KW0 sing 193 n n C25 N1 KW0 sing 194 n n C25 C24 KW0 sing 195 n n C19 C20 KW0 sing 196 n n C24 O7 KW0 sing 197 n n O7 P1 KW0 sing 198 n n C20 C21 KW0 sing 199 n n C20 O4 KW0 sing 200 n n O3 C22 KW0 sing 201 n n O3 C21 KW0 sing 202 n n C23 C22 KW0 sing 203 n n O4 P1 KW0 sing 204 n n P1 O6 KW0 doub 205 n n P1 O5 KW0 sing 206 n n C12 H1 KW0 sing 207 n n C12 H2 KW0 sing 208 n n C11 H3 KW0 sing 209 n n C11 H4 KW0 sing 210 n n C1 H5 KW0 sing 211 n n C1 H6 KW0 sing 212 n n C1 H7 KW0 sing 213 n n C2 H8 KW0 sing 214 n n C2 H9 KW0 sing 215 n n C3 H10 KW0 sing 216 n n C3 H11 KW0 sing 217 n n C4 H12 KW0 sing 218 n n C4 H13 KW0 sing 219 n n C5 H14 KW0 sing 220 n n C5 H15 KW0 sing 221 n n C6 H16 KW0 sing 222 n n C6 H17 KW0 sing 223 n n C7 H18 KW0 sing 224 n n C7 H19 KW0 sing 225 n n C8 H20 KW0 sing 226 n n C8 H21 KW0 sing 227 n n C9 H22 KW0 sing 228 n n C10 H23 KW0 sing 229 n n C13 H24 KW0 sing 230 n n C13 H25 KW0 sing 231 n n C14 H26 KW0 sing 232 n n C14 H27 KW0 sing 233 n n C15 H28 KW0 sing 234 n n C15 H29 KW0 sing 235 n n C16 H30 KW0 sing 236 n n C16 H31 KW0 sing 237 n n C17 H32 KW0 sing 238 n n C17 H33 KW0 sing 239 n n C19 H34 KW0 sing 240 n n C19 H35 KW0 sing 241 n n C20 H36 KW0 sing 242 n n C21 H37 KW0 sing 243 n n C21 H38 KW0 sing 244 n n C22 H39 KW0 sing 245 n n C22 H40 KW0 sing 246 n n C23 H41 KW0 sing 247 n n C23 H42 KW0 sing 248 n n C23 H43 KW0 sing 249 n n O5 H44 KW0 sing 250 n n C24 H45 KW0 sing 251 n n C24 H46 KW0 sing 252 n n C25 H47 KW0 sing 253 n n N1 H48 KW0 sing 254 n n N1 H49 KW0 sing 255 n n O8 H51 KW0 sing 256 n n # _atom_sites.entry_id 8XBG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id KW0 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id KW0 _pdbx_nonpoly_scheme.auth_mon_id LPS _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 KW0 . . . B 2 142.553 106.714 122.261 1 202.52 ? C12 KW0 401 A 1 HETATM 2 C C11 KW0 . . . B 2 141.771 107.206 121.015 1 163.59 ? C11 KW0 401 A 1 HETATM 3 C C1 KW0 . . . B 2 138.016 102.53 113.139 1 139.39 ? C1 KW0 401 A 1 HETATM 4 C C2 KW0 . . . B 2 139.203 102.534 114.079 1 123.33 ? C2 KW0 401 A 1 HETATM 5 C C3 KW0 . . . B 2 139.522 103.881 114.692 1 102.11 ? C3 KW0 401 A 1 HETATM 6 C C4 KW0 . . . B 2 140.348 103.793 115.988 1 103.65 ? C4 KW0 401 A 1 HETATM 7 C C5 KW0 . . . B 2 140.093 104.883 117.069 1 87.36 ? C5 KW0 401 A 1 HETATM 8 C C6 KW0 . . . B 2 138.646 104.987 117.602 1 76.1 ? C6 KW0 401 A 1 HETATM 9 C C7 KW0 . . . B 2 138.267 106.399 118.006 1 94.13 ? C7 KW0 401 A 1 HETATM 10 C C8 KW0 . . . B 2 139.368 107.085 118.833 1 122.5 ? C8 KW0 401 A 1 HETATM 11 C C9 KW0 . . . B 2 139.4 106.725 120.278 1 90.78 ? C9 KW0 401 A 1 HETATM 12 C C10 KW0 . . . B 2 140.273 107.041 121.167 1 83.88 ? C10 KW0 401 A 1 HETATM 13 C C13 KW0 . . . B 2 143.952 107.255 122.519 1 149.43 ? C13 KW0 401 A 1 HETATM 14 C C14 KW0 . . . B 2 144.947 106.836 121.459 1 149.37 ? C14 KW0 401 A 1 HETATM 15 C C15 KW0 . . . B 2 146.337 107.431 121.61 1 135.68 ? C15 KW0 401 A 1 HETATM 16 C C16 KW0 . . . B 2 147.1 107.599 120.3 1 134.41 ? C16 KW0 401 A 1 HETATM 17 C C17 KW0 . . . B 2 148.198 108.629 120.412 1 130.32 ? C17 KW0 401 A 1 HETATM 18 C C18 KW0 . . . B 2 149.314 108.208 121.317 1 118.05 ? C18 KW0 401 A 1 HETATM 19 O O1 KW0 . . . B 2 150.146 107.406 120.988 1 113.29 ? O1 KW0 401 A 1 HETATM 20 O O2 KW0 . . . B 2 149.277 108.777 122.526 1 116.28 ? O2 KW0 401 A 1 HETATM 21 C C19 KW0 . . . B 2 150.127 108.117 123.483 1 126.82 ? C19 KW0 401 A 1 HETATM 22 C C20 KW0 . . . B 2 149.878 108.641 124.876 1 107.2 ? C20 KW0 401 A 1 HETATM 23 C C21 KW0 . . . B 2 150.334 107.662 125.937 1 182.03 ? C21 KW0 401 A 1 HETATM 24 O O3 KW0 . . . B 2 149.624 106.441 125.792 1 206.49 ? O3 KW0 401 A 1 HETATM 25 C C22 KW0 . . . B 2 150.163 105.276 126.414 1 204.29 ? C22 KW0 401 A 1 HETATM 26 C C23 KW0 . . . B 2 151.243 104.7 125.597 1 180.06 ? C23 KW0 401 A 1 HETATM 27 O O4 KW0 . . . B 2 150.698 109.807 124.918 1 86.76 ? O4 KW0 401 A 1 HETATM 28 P P1 KW0 . . . B 2 151.01 110.746 126.186 1 153.77 ? P1 KW0 401 A 1 HETATM 29 O O5 KW0 . . . B 2 149.698 111.133 126.813 1 103.91 ? O5 KW0 401 A 1 HETATM 30 O O6 KW0 . . . B 2 152.06 110.023 126.993 1 165.04 ? O6 KW0 401 A 1 HETATM 31 O O7 KW0 . . . B 2 151.802 111.985 125.553 1 144.37 ? O7 KW0 401 A 1 HETATM 32 C C24 KW0 . . . B 2 153.129 111.718 125.084 1 142.47 ? C24 KW0 401 A 1 HETATM 33 C C25 KW0 . . . B 2 153.51 112.764 124.046 1 158.61 ? C25 KW0 401 A 1 HETATM 34 N N1 KW0 . . . B 2 153.362 114.129 124.615 1 172.17 ? N1 KW0 401 A 1 HETATM 35 C C26 KW0 . . . B 2 152.666 112.638 122.765 1 162.11 ? C26 KW0 401 A 1 HETATM 36 O O8 KW0 . . . B 2 151.423 112.886 122.861 1 94.83 ? O8 KW0 401 A 1 HETATM 37 O O9 KW0 . . . B 2 153.26 112.27 121.723 1 138.27 ? O9 KW0 401 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #