data_8XCG # _model_server_result.job_id KUBsbB-yZmyaix0rI7pTew _model_server_result.datetime_utc '2024-10-16 23:35:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xcg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":301}' # _entry.id 8XCG # _exptl.entry_id 8XCG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 351.64 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XCG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XCG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 P N N ? 5 Q N N ? 5 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 343 F CYS 343 1_555 B SG CYS 348 F CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? disulf ? disulf2 D SG CYS 343 J CYS 343 1_555 D SG CYS 348 J CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf3 K SG CYS 343 Z CYS 343 1_555 K SG CYS 348 Z CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc1 F SG CYS 182 L CYS 182 1_555 P FE1 SF4 . L SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc2 F SG CYS 205 L CYS 205 1_555 P FE2 SF4 . L SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc3 F SG CYS 212 L CYS 212 1_555 P FE4 SF4 . L SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc4 H SG CYS 173 N CYS 173 1_555 Q FE3 SF4 . N SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc5 H SG CYS 182 N CYS 182 1_555 Q FE1 SF4 . N SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc6 H SG CYS 205 N CYS 205 1_555 Q FE2 SF4 . N SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc7 H SG CYS 212 N CYS 212 1_555 Q FE4 SF4 . N SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc8 M SG CYS 173 f CYS 173 1_555 R FE3 SF4 . f SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc9 M SG CYS 182 f CYS 182 1_555 R FE1 SF4 . f SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc10 M SG CYS 205 f CYS 205 1_555 R FE2 SF4 . f SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc11 M SG CYS 212 f CYS 212 1_555 R FE4 SF4 . f SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 288 n n FE1 S3 SF4 sing 289 n n FE1 S4 SF4 sing 290 n n FE2 S1 SF4 sing 291 n n FE2 S3 SF4 sing 292 n n FE2 S4 SF4 sing 293 n n FE3 S1 SF4 sing 294 n n FE3 S2 SF4 sing 295 n n FE3 S4 SF4 sing 296 n n FE4 S1 SF4 sing 297 n n FE4 S2 SF4 sing 298 n n FE4 S3 SF4 sing 299 n n # _atom_sites.entry_id 8XCG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 5 SF4 L 1 301 301 SF4 SF4 . Q 5 SF4 N 1 301 301 SF4 SF4 . R 5 SF4 f 1 301 301 SF4 SF4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . R 5 191.463 65.172 211.981 1 82.64 ? FE1 SF4 301 f 1 HETATM 2 FE FE2 SF4 . . . R 5 193.318 67.162 212.239 1 74.59 ? FE2 SF4 301 f 1 HETATM 3 FE FE3 SF4 . . . R 5 190.873 67.881 211.335 1 85.7 ? FE3 SF4 301 f 1 HETATM 4 FE FE4 SF4 . . . R 5 192.405 66.445 209.765 1 74.65 ? FE4 SF4 301 f 1 HETATM 5 S S1 SF4 . . . R 5 192.769 68.548 210.504 1 63.9 ? S1 SF4 301 f 1 HETATM 6 S S2 SF4 . . . R 5 190.265 66.027 210.152 1 78.81 ? S2 SF4 301 f 1 HETATM 7 S S3 SF4 . . . R 5 193.523 65.023 211.304 1 76.58 ? S3 SF4 301 f 1 HETATM 8 S S4 SF4 . . . R 5 191.475 67.003 213.43 1 88.64 ? S4 SF4 301 f 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #