data_8XCO # _model_server_result.job_id WICoTkDhG5wRwaFMr0e0ew _model_server_result.datetime_utc '2024-11-22 16:20:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 8XCO # _exptl.entry_id 8XCO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XCO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 8XCO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 500 500 NDP NDP . C 3 HOH A 1 601 610 HOH HOH . C 3 HOH A 2 602 608 HOH HOH . C 3 HOH A 3 603 626 HOH HOH . C 3 HOH A 4 604 603 HOH HOH . C 3 HOH A 5 605 607 HOH HOH . C 3 HOH A 6 606 604 HOH HOH . C 3 HOH A 7 607 615 HOH HOH . C 3 HOH A 8 608 628 HOH HOH . C 3 HOH A 9 609 612 HOH HOH . C 3 HOH A 10 610 605 HOH HOH . C 3 HOH A 11 611 625 HOH HOH . C 3 HOH A 12 612 616 HOH HOH . C 3 HOH A 13 613 617 HOH HOH . C 3 HOH A 14 614 640 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 124.803 78.188 122.941 1 16.92 ? PA NDP 500 A 1 HETATM 2 O O1A NDP . . . B 2 125.507 78.069 121.571 1 22.93 ? O1A NDP 500 A 1 HETATM 3 O O2A NDP . . . B 2 124.641 79.682 123.318 1 8.93 ? O2A NDP 500 A 1 HETATM 4 O O5B NDP . . . B 2 125.743 77.492 124.006 1 21.66 ? O5B NDP 500 A 1 HETATM 5 C C5B NDP . . . B 2 126.012 76.123 123.888 1 20.36 ? C5B NDP 500 A 1 HETATM 6 C C4B NDP . . . B 2 126.408 75.576 125.246 1 20.38 ? C4B NDP 500 A 1 HETATM 7 O O4B NDP . . . B 2 126.338 74.173 125.254 1 25.51 ? O4B NDP 500 A 1 HETATM 8 C C3B NDP . . . B 2 127.797 75.989 125.584 1 20.79 ? C3B NDP 500 A 1 HETATM 9 O O3B NDP . . . B 2 128.01 75.932 126.94 1 21.58 ? O3B NDP 500 A 1 HETATM 10 C C2B NDP . . . B 2 128.551 74.93 124.936 1 21.7 ? C2B NDP 500 A 1 HETATM 11 O O2B NDP . . . B 2 129.799 74.85 125.512 1 25.73 ? O2B NDP 500 A 1 HETATM 12 C C1B NDP . . . B 2 127.689 73.762 125.281 1 21.79 ? C1B NDP 500 A 1 HETATM 13 N N9A NDP . . . B 2 127.911 72.63 124.397 1 24.53 ? N9A NDP 500 A 1 HETATM 14 C C8A NDP . . . B 2 127.925 72.535 122.937 1 22.4 ? C8A NDP 500 A 1 HETATM 15 N N7A NDP . . . B 2 128.187 71.193 122.646 1 25.77 ? N7A NDP 500 A 1 HETATM 16 C C5A NDP . . . B 2 128.326 70.512 123.914 1 22.82 ? C5A NDP 500 A 1 HETATM 17 C C6A NDP . . . B 2 128.582 69.226 124.172 1 26.52 ? C6A NDP 500 A 1 HETATM 18 N N6A NDP . . . B 2 128.765 68.275 123.112 1 22.4 ? N6A NDP 500 A 1 HETATM 19 N N1A NDP . . . B 2 128.657 68.867 125.369 1 22.59 ? N1A NDP 500 A 1 HETATM 20 C C2A NDP . . . B 2 128.513 69.607 126.441 1 24.14 ? C2A NDP 500 A 1 HETATM 21 N N3A NDP . . . B 2 128.245 70.978 126.298 1 24.34 ? N3A NDP 500 A 1 HETATM 22 C C4A NDP . . . B 2 128.158 71.383 124.919 1 24.66 ? C4A NDP 500 A 1 HETATM 23 O O3 NDP . . . B 2 123.417 77.453 122.879 1 26.54 ? O3 NDP 500 A 1 HETATM 24 P PN NDP . . . B 2 122.057 78.184 123.214 1 18.71 ? PN NDP 500 A 1 HETATM 25 O O1N NDP . . . B 2 121.743 79.181 122.072 1 14.97 ? O1N NDP 500 A 1 HETATM 26 O O2N NDP . . . B 2 122.193 78.924 124.556 1 19.22 ? O2N NDP 500 A 1 HETATM 27 O O5D NDP . . . B 2 120.921 77.121 123.306 1 18.24 ? O5D NDP 500 A 1 HETATM 28 C C5D NDP . . . B 2 121.212 75.89 123.899 1 15.82 ? C5D NDP 500 A 1 HETATM 29 C C4D NDP . . . B 2 120.184 74.825 123.572 1 20.41 ? C4D NDP 500 A 1 HETATM 30 O O4D NDP . . . B 2 118.914 75.262 123.383 1 17.08 ? O4D NDP 500 A 1 HETATM 31 C C3D NDP . . . B 2 120.355 74.173 122.237 1 18.28 ? C3D NDP 500 A 1 HETATM 32 O O3D NDP . . . B 2 120.157 72.815 122.308 1 23.24 ? O3D NDP 500 A 1 HETATM 33 C C2D NDP . . . B 2 119.312 74.825 121.349 1 19.51 ? C2D NDP 500 A 1 HETATM 34 O O2D NDP . . . B 2 118.927 73.996 120.33 1 19.31 ? O2D NDP 500 A 1 HETATM 35 C C1D NDP . . . B 2 118.177 75.182 122.254 1 21.77 ? C1D NDP 500 A 1 HETATM 36 N N1N NDP . . . B 2 117.503 76.404 121.883 1 22.82 ? N1N NDP 500 A 1 HETATM 37 C C2N NDP . . . B 2 117.837 77.645 122.552 1 19.88 ? C2N NDP 500 A 1 HETATM 38 C C3N NDP . . . B 2 117.159 78.852 122.433 1 24.54 ? C3N NDP 500 A 1 HETATM 39 C C7N NDP . . . B 2 117.944 80.043 122.905 1 21.94 ? C7N NDP 500 A 1 HETATM 40 O O7N NDP . . . B 2 117.57 81.171 122.603 1 20.46 ? O7N NDP 500 A 1 HETATM 41 N N7N NDP . . . B 2 119.14 79.893 123.694 1 17.68 ? N7N NDP 500 A 1 HETATM 42 C C4N NDP . . . B 2 116.068 79.05 121.416 1 24.46 ? C4N NDP 500 A 1 HETATM 43 C C5N NDP . . . B 2 115.587 77.657 121.215 1 22.11 ? C5N NDP 500 A 1 HETATM 44 C C6N NDP . . . B 2 116.502 76.703 120.913 1 21.49 ? C6N NDP 500 A 1 HETATM 45 P P2B NDP . . . B 2 130.934 75.878 125.172 1 21.69 ? P2B NDP 500 A 1 HETATM 46 O O1X NDP . . . B 2 132.232 75.448 125.797 1 27.89 ? O1X NDP 500 A 1 HETATM 47 O O2X NDP . . . B 2 130.567 77.227 125.726 1 19.59 ? O2X NDP 500 A 1 HETATM 48 O O3X NDP . . . B 2 131.109 75.993 123.678 1 20.87 ? O3X NDP 500 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #