data_8XCS # _model_server_result.job_id m42mxurzonGGfM15xpxgFA _model_server_result.datetime_utc '2024-10-25 20:25:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xcs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 8XCS # _exptl.entry_id 8XCS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 146.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XCS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XCS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 1 n n C1 O2 AKG sing 2 n n C1 C2 AKG sing 3 n n O2 HO2 AKG sing 4 n n C2 O5 AKG doub 5 n n C2 C3 AKG sing 6 n n C3 C4 AKG sing 7 n n C3 H31 AKG sing 8 n n C3 H32 AKG sing 9 n n C4 C5 AKG sing 10 n n C4 H41 AKG sing 11 n n C4 H42 AKG sing 12 n n C5 O3 AKG doub 13 n n C5 O4 AKG sing 14 n n O4 HO4 AKG sing 15 n n # _atom_sites.entry_id 8XCS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 501 500 NDP NDP . C 3 AKG A 1 502 511 AKG AKG . D 4 NH4 A 1 503 514 NH4 NH4 . E 5 HOH A 1 601 603 HOH HOH . E 5 HOH A 2 602 617 HOH HOH . E 5 HOH A 3 603 612 HOH HOH . E 5 HOH A 4 604 611 HOH HOH . E 5 HOH A 5 605 601 HOH HOH . E 5 HOH A 6 606 607 HOH HOH . E 5 HOH A 7 607 621 HOH HOH . E 5 HOH A 8 608 622 HOH HOH . E 5 HOH A 9 609 624 HOH HOH . E 5 HOH A 10 610 626 HOH HOH . E 5 HOH A 11 611 604 HOH HOH . E 5 HOH A 12 612 625 HOH HOH . E 5 HOH A 13 613 620 HOH HOH . E 5 HOH A 14 614 610 HOH HOH . E 5 HOH A 15 615 606 HOH HOH . E 5 HOH A 16 616 618 HOH HOH . E 5 HOH A 17 617 614 HOH HOH . E 5 HOH A 18 618 602 HOH HOH . E 5 HOH A 19 619 609 HOH HOH . E 5 HOH A 20 620 619 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . . . C 3 112.65 77.881 116.503 1 36.69 ? C1 AKG 502 A 1 HETATM 2 O O1 AKG . . . C 3 113.435 77.067 115.972 1 31.15 ? O1 AKG 502 A 1 HETATM 3 O O2 AKG . . . C 3 111.889 77.551 117.437 1 39.72 ? O2 AKG 502 A 1 HETATM 4 C C2 AKG . . . C 3 112.623 79.258 116.015 1 34.56 ? C2 AKG 502 A 1 HETATM 5 O O5 AKG . . . C 3 113.334 79.592 115.085 1 36.69 ? O5 AKG 502 A 1 HETATM 6 C C3 AKG . . . C 3 111.708 80.265 116.669 1 31.91 ? C3 AKG 502 A 1 HETATM 7 C C4 AKG . . . C 3 111.125 81.181 115.599 1 31.54 ? C4 AKG 502 A 1 HETATM 8 C C5 AKG . . . C 3 110.547 82.413 116.254 1 28.81 ? C5 AKG 502 A 1 HETATM 9 O O3 AKG . . . C 3 109.538 82.942 115.743 1 26.69 ? O3 AKG 502 A 1 HETATM 10 O O4 AKG . . . C 3 111.102 82.856 117.28 1 23.79 ? O4 AKG 502 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #