data_8XCW
#
_model_server_result.job_id            i1QxvkgPTKjt-7yrzLw2Ng 
_model_server_result.datetime_utc      '2024-11-22 21:06:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xcw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":500}' 
#
_entry.id    8XCW 
#
_exptl.entry_id    8XCW 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8XCW 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8XCW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 252 n n 
PA O2A NDP sing 253 n n 
PA O5B NDP sing 254 n n 
PA O3 NDP sing 255 n n 
O2A HOA2 NDP sing 256 n n 
O5B C5B NDP sing 257 n n 
C5B C4B NDP sing 258 n n 
C5B H51A NDP sing 259 n n 
C5B H52A NDP sing 260 n n 
C4B O4B NDP sing 261 n n 
C4B C3B NDP sing 262 n n 
C4B H4B NDP sing 263 n n 
O4B C1B NDP sing 264 n n 
C3B O3B NDP sing 265 n n 
C3B C2B NDP sing 266 n n 
C3B H3B NDP sing 267 n n 
O3B HO3A NDP sing 268 n n 
C2B O2B NDP sing 269 n n 
C2B C1B NDP sing 270 n n 
C2B H2B NDP sing 271 n n 
O2B P2B NDP sing 272 n n 
C1B N9A NDP sing 273 n n 
C1B H1B NDP sing 274 n n 
N9A C8A NDP sing 275 n y 
N9A C4A NDP sing 276 n y 
C8A N7A NDP doub 277 n y 
C8A H8A NDP sing 278 n n 
N7A C5A NDP sing 279 n y 
C5A C6A NDP sing 280 n y 
C5A C4A NDP doub 281 n y 
C6A N6A NDP sing 282 n n 
C6A N1A NDP doub 283 n y 
N6A H61A NDP sing 284 n n 
N6A H62A NDP sing 285 n n 
N1A C2A NDP sing 286 n y 
C2A N3A NDP doub 287 n y 
C2A H2A NDP sing 288 n n 
N3A C4A NDP sing 289 n y 
O3 PN NDP sing 290 n n 
PN O1N NDP doub 291 n n 
PN O2N NDP sing 292 n n 
PN O5D NDP sing 293 n n 
O2N H21N NDP sing 294 n n 
O5D C5D NDP sing 295 n n 
C5D C4D NDP sing 296 n n 
C5D H51N NDP sing 297 n n 
C5D H52N NDP sing 298 n n 
C4D O4D NDP sing 299 n n 
C4D C3D NDP sing 300 n n 
C4D H4D NDP sing 301 n n 
O4D C1D NDP sing 302 n n 
C3D O3D NDP sing 303 n n 
C3D C2D NDP sing 304 n n 
C3D H3D NDP sing 305 n n 
O3D HO3N NDP sing 306 n n 
C2D O2D NDP sing 307 n n 
C2D C1D NDP sing 308 n n 
C2D H2D NDP sing 309 n n 
O2D HO2N NDP sing 310 n n 
C1D N1N NDP sing 311 n n 
C1D H1D NDP sing 312 n n 
N1N C2N NDP sing 313 n n 
N1N C6N NDP sing 314 n n 
C2N C3N NDP doub 315 n n 
C2N H2N NDP sing 316 n n 
C3N C7N NDP sing 317 n n 
C3N C4N NDP sing 318 n n 
C7N O7N NDP doub 319 n n 
C7N N7N NDP sing 320 n n 
N7N H71N NDP sing 321 n n 
N7N H72N NDP sing 322 n n 
C4N C5N NDP sing 323 n n 
C4N H41N NDP sing 324 n n 
C4N H42N NDP sing 325 n n 
C5N C6N NDP doub 326 n n 
C5N H5N NDP sing 327 n n 
C6N H6N NDP sing 328 n n 
P2B O1X NDP doub 329 n n 
P2B O2X NDP sing 330 n n 
P2B O3X NDP sing 331 n n 
O2X HOP2 NDP sing 332 n n 
O3X HOP3 NDP sing 333 n n 
#
_atom_sites.entry_id                     8XCW 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP A 1 500 500 NDP NDP . 
C 3 AKG A 1 501 501 AKG AKG . 
D 4 HOH A 1 601 604 HOH HOH . 
D 4 HOH A 2 602 608 HOH HOH . 
D 4 HOH A 3 603 614 HOH HOH . 
D 4 HOH A 4 604 616 HOH HOH . 
D 4 HOH A 5 605 615 HOH HOH . 
D 4 HOH A 6 606 601 HOH HOH . 
D 4 HOH A 7 607 612 HOH HOH . 
D 4 HOH A 8 608 603 HOH HOH . 
D 4 HOH A 9 609 602 HOH HOH . 
D 4 HOH A 10 610 605 HOH HOH . 
D 4 HOH A 11 611 617 HOH HOH . 
D 4 HOH A 12 612 609 HOH HOH . 
D 4 HOH A 13 613 611 HOH HOH . 
D 4 HOH A 14 614 613 HOH HOH . 
D 4 HOH A 15 615 606 HOH HOH . 
D 4 HOH A 16 616 610 HOH HOH . 
D 4 HOH A 17 617 607 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . B 2 126.692 111.854 122.017 1 16.92 ? PA NDP 500 A 1 
HETATM 2 O O1A NDP . . . B 2 127.082 112.185 120.559 1 22.93 ? O1A NDP 500 A 1 
HETATM 3 O O2A NDP . . . B 2 125.295 112.446 122.332 1 8.93 -1 O2A NDP 500 A 1 
HETATM 4 O O5B NDP . . . B 2 127.763 112.548 122.952 1 21.66 ? O5B NDP 500 A 1 
HETATM 5 C C5B NDP . . . B 2 129.077 112.065 122.959 1 20.36 ? C5B NDP 500 A 1 
HETATM 6 C C4B NDP . . . B 2 129.628 112.148 124.369 1 20.38 ? C4B NDP 500 A 1 
HETATM 7 O O4B NDP . . . B 2 130.771 111.342 124.502 1 25.51 ? O4B NDP 500 A 1 
HETATM 8 C C3B NDP . . . B 2 129.991 113.552 124.701 1 20.79 ? C3B NDP 500 A 1 
HETATM 9 O O3B NDP . . . B 2 130.032 113.74 126.061 1 21.58 ? O3B NDP 500 A 1 
HETATM 10 C C2B NDP . . . B 2 131.339 113.607 124.168 1 21.7 ? C2B NDP 500 A 1 
HETATM 11 O O2B NDP . . . B 2 132.023 114.638 124.777 1 25.73 ? O2B NDP 500 A 1 
HETATM 12 C C1B NDP . . . B 2 131.834 112.266 124.596 1 21.79 ? C1B NDP 500 A 1 
HETATM 13 N N9A NDP . . . B 2 132.983 111.827 123.822 1 24.53 ? N9A NDP 500 A 1 
HETATM 14 C C8A NDP . . . B 2 133.187 111.715 122.379 1 22.4 ? C8A NDP 500 A 1 
HETATM 15 N N7A NDP . . . B 2 134.489 111.232 122.214 1 25.77 ? N7A NDP 500 A 1 
HETATM 16 C C5A NDP . . . B 2 135.041 111.063 123.541 1 22.82 ? C5A NDP 500 A 1 
HETATM 17 C C6A NDP . . . B 2 136.248 110.631 123.92 1 26.52 ? C6A NDP 500 A 1 
HETATM 18 N N6A NDP . . . B 2 137.235 110.242 122.954 1 22.4 ? N6A NDP 500 A 1 
HETATM 19 N N1A NDP . . . B 2 136.496 110.571 125.145 1 22.59 ? N1A NDP 500 A 1 
HETATM 20 C C2A NDP . . . B 2 135.707 110.884 126.141 1 24.14 ? C2A NDP 500 A 1 
HETATM 21 N N3A NDP . . . B 2 134.411 111.357 125.871 1 24.34 ? N3A NDP 500 A 1 
HETATM 22 C C4A NDP . . . B 2 134.132 111.421 124.46 1 24.66 ? C4A NDP 500 A 1 
HETATM 23 O O3 NDP . . . B 2 126.719 110.299 122.222 1 26.54 ? O3 NDP 500 A 1 
HETATM 24 P PN NDP . . . B 2 125.404 109.447 122.423 1 18.71 ? PN NDP 500 A 1 
HETATM 25 O O1N NDP . . . B 2 124.495 109.655 121.188 1 14.97 ? O1N NDP 500 A 1 
HETATM 26 O O2N NDP . . . B 2 124.69 109.91 123.706 1 19.22 -1 O2N NDP 500 A 1 
HETATM 27 O O5D NDP . . . B 2 125.788 107.941 122.541 1 18.24 ? O5D NDP 500 A 1 
HETATM 28 C C5D NDP . . . B 2 127.011 107.614 123.133 1 15.82 ? C5D NDP 500 A 1 
HETATM 29 C C4D NDP . . . B 2 127.478 106.216 122.781 1 20.41 ? C4D NDP 500 A 1 
HETATM 30 O O4D NDP . . . B 2 126.523 105.252 122.785 1 17.08 ? O4D NDP 500 A 1 
HETATM 31 C C3D NDP . . . B 2 127.915 106.036 121.362 1 18.28 ? C3D NDP 500 A 1 
HETATM 32 O O3D NDP . . . B 2 129.055 105.272 121.281 1 23.24 ? O3D NDP 500 A 1 
HETATM 33 C C2D NDP . . . B 2 126.751 105.343 120.682 1 19.51 ? C2D NDP 500 A 1 
HETATM 34 O O2D NDP . . . B 2 127.164 104.595 119.611 1 19.31 ? O2D NDP 500 A 1 
HETATM 35 C C1D NDP . . . B 2 126.1 104.508 121.739 1 21.77 ? C1D NDP 500 A 1 
HETATM 36 N N1N NDP . . . B 2 124.665 104.416 121.601 1 22.82 ? N1N NDP 500 A 1 
HETATM 37 C C2N NDP . . . B 2 123.879 105.616 121.398 1 19.88 ? C2N NDP 500 A 1 
HETATM 38 C C3N NDP . . . B 2 122.493 105.705 121.428 1 24.54 ? C3N NDP 500 A 1 
HETATM 39 C C7N NDP . . . B 2 121.948 106.955 120.797 1 21.94 ? C7N NDP 500 A 1 
HETATM 40 O O7N NDP . . . B 2 120.736 107.109 120.711 1 20.46 ? O7N NDP 500 A 1 
HETATM 41 N N7N NDP . . . B 2 122.82 107.975 120.266 1 17.68 ? N7N NDP 500 A 1 
HETATM 42 C C4N NDP . . . B 2 121.622 104.481 121.502 1 24.46 ? C4N NDP 500 A 1 
HETATM 43 C C5N NDP . . . B 2 122.532 103.501 122.151 1 22.11 ? C5N NDP 500 A 1 
HETATM 44 C C6N NDP . . . B 2 123.76 103.314 121.609 1 21.49 ? C6N NDP 500 A 1 
HETATM 45 P P2B NDP . . . B 2 131.791 116.136 124.373 1 21.69 ? P2B NDP 500 A 1 
HETATM 46 O O1X NDP . . . B 2 133.008 116.957 124.695 1 27.89 ? O1X NDP 500 A 1 
HETATM 47 O O2X NDP . . . B 2 130.629 116.688 125.152 1 19.59 -1 O2X NDP 500 A 1 
HETATM 48 O O3X NDP . . . B 2 131.487 116.241 122.899 1 20.87 -1 O3X NDP 500 A 1 
#
_model_server_stats.io_time_ms              105 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#