data_8XD2 # _model_server_result.job_id KiAR8cpa-vVhgk8EhsRvDw _model_server_result.datetime_utc '2024-10-13 19:16:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xd2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 8XD2 # _exptl.entry_id 8XD2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 147.129 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GAMMA-L-GLUTAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XD2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id GGL _chem_comp.mon_nstd_flag . _chem_comp.name 'GAMMA-L-GLUTAMIC ACID' _chem_comp.type 'l-gamma-peptide, c-delta linking' _chem_comp.pdbx_synonyms 'L-GLUTAMIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GGL sing 83 n n N H GGL sing 84 n n N H2 GGL sing 85 n n CA C GGL sing 86 n n CA CB GGL sing 87 n n CA HA GGL sing 88 n n C O GGL doub 89 n n C OXT GGL sing 90 n n CB CG GGL sing 91 n n CB HB2 GGL sing 92 n n CB HB3 GGL sing 93 n n CG CD GGL sing 94 n n CG HG2 GGL sing 95 n n CG HG3 GGL sing 96 n n CD OE1 GGL doub 97 n n CD OE2 GGL sing 98 n n OE2 HE2 GGL sing 99 n n OXT HXT GGL sing 100 n n # _atom_sites.entry_id 8XD2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 501 500 NAP NAP . C 3 GGL A 1 502 502 GGL GGL . D 4 HOH A 1 601 604 HOH HOH . D 4 HOH A 2 602 608 HOH HOH . D 4 HOH A 3 603 603 HOH HOH . D 4 HOH A 4 604 601 HOH HOH . D 4 HOH A 5 605 606 HOH HOH . D 4 HOH A 6 606 602 HOH HOH . D 4 HOH A 7 607 609 HOH HOH . D 4 HOH A 8 608 607 HOH HOH . D 4 HOH A 9 609 605 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GGL . . . C 3 125.61 105.418 118.711 1 11.98 ? N GGL 502 A 1 HETATM 2 C CA GGL . . . C 3 125.722 105.75 120.126 1 12.34 ? CA GGL 502 A 1 HETATM 3 C C GGL . . . C 3 127.133 106.213 120.473 1 13.26 ? C GGL 502 A 1 HETATM 4 O O GGL . . . C 3 128.059 105.874 119.738 1 12.87 ? O GGL 502 A 1 HETATM 5 C CB GGL . . . C 3 125.336 104.548 120.991 1 13.13 ? CB GGL 502 A 1 HETATM 6 C CG GGL . . . C 3 124.528 103.491 120.257 1 13.17 ? CG GGL 502 A 1 HETATM 7 C CD GGL . . . C 3 123.111 103.942 119.963 1 14.89 ? CD GGL 502 A 1 HETATM 8 O OE1 GGL . . . C 3 122.279 103.088 119.592 1 16.12 ? OE1 GGL 502 A 1 HETATM 9 O OE2 GGL . . . C 3 122.83 105.15 120.102 1 13.97 ? OE2 GGL 502 A 1 HETATM 10 O OXT GGL . . . C 3 127.293 106.908 121.475 1 16.11 ? OXT GGL 502 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #