data_8XDB
#
_model_server_result.job_id            E2hVz3nyD7sjJ15hXxnivA 
_model_server_result.datetime_utc      '2024-12-23 08:34:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xdb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    8XDB 
#
_exptl.entry_id    8XDB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              264.3 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5E)-2-azanylidene-5-[(2,3-dimethoxyphenyl)methylidene]-1,3-thiazolidin-4-one 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
_chem_comp.formula           'C12 H12 N2 O3 S' 
_chem_comp.formula_weight    264.3 
_chem_comp.id                A1LYJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5E)-2-azanylidene-5-[(2,3-dimethoxyphenyl)methylidene]-1,3-thiazolidin-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N07 C02 A1LYJ doub 1 n n 
C02 N01 A1LYJ sing 2 n n 
C02 S03 A1LYJ sing 3 n n 
N01 C05 A1LYJ sing 4 n n 
S03 C04 A1LYJ sing 5 n n 
C05 C04 A1LYJ sing 6 n n 
C05 O06 A1LYJ doub 7 n n 
C04 C08 A1LYJ doub 8 e n 
C08 C09 A1LYJ sing 9 n n 
C09 C14 A1LYJ doub 10 n y 
C09 C10 A1LYJ sing 11 n y 
C14 C13 A1LYJ sing 12 n y 
O15 C10 A1LYJ sing 13 n n 
O15 C18 A1LYJ sing 14 n n 
C10 C11 A1LYJ doub 15 n y 
C13 C12 A1LYJ doub 16 n y 
C11 C12 A1LYJ sing 17 n y 
C11 O16 A1LYJ sing 18 n n 
O16 C17 A1LYJ sing 19 n n 
C13 H1 A1LYJ sing 20 n n 
C17 H2 A1LYJ sing 21 n n 
C17 H3 A1LYJ sing 22 n n 
C17 H4 A1LYJ sing 23 n n 
N07 H5 A1LYJ sing 24 n n 
C08 H7 A1LYJ sing 25 n n 
C12 H9 A1LYJ sing 26 n n 
C14 H10 A1LYJ sing 27 n n 
C18 H11 A1LYJ sing 28 n n 
C18 H12 A1LYJ sing 29 n n 
C18 H13 A1LYJ sing 30 n n 
N01 H14 A1LYJ sing 31 n n 
#
_atom_sites.entry_id                     8XDB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 A1LYJ A 1 401 401 A1LYJ LIG . 
E 2 A1LYJ A 1 402 402 A1LYJ LIG . 
F 2 A1LYJ B 1 401 401 A1LYJ LIG . 
G 2 A1LYJ B 1 402 402 A1LYJ LIG . 
H 2 A1LYJ C 1 401 401 A1LYJ LIG . 
I 2 A1LYJ C 1 402 402 A1LYJ LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 A1LYJ . . . H 2 128.864 102.23 133.558 1 20 0 C10 A1LYJ 401 C 1 
HETATM 2 C C13 A1LYJ . . . H 2 128.995 99.343 133.68 1 20 0 C13 A1LYJ 401 C 1 
HETATM 3 C C17 A1LYJ . . . H 2 130.649 101.187 136.763 1 20 0 C17 A1LYJ 401 C 1 
HETATM 4 N N01 A1LYJ . . . H 2 129.041 100.932 128.01 1 20 0 N01 A1LYJ 401 C 1 
HETATM 5 C C02 A1LYJ . . . H 2 127.763 101.486 127.299 1 20 0 C02 A1LYJ 401 C 1 
HETATM 6 S S03 A1LYJ . . . H 2 126.937 102.09 128.619 1 20 0 S03 A1LYJ 401 C 1 
HETATM 7 C C04 A1LYJ . . . H 2 127.782 101.81 130.007 1 20 0 C04 A1LYJ 401 C 1 
HETATM 8 C C05 A1LYJ . . . H 2 129.084 101.058 129.568 1 20 0 C05 A1LYJ 401 C 1 
HETATM 9 O O06 A1LYJ . . . H 2 129.919 100.703 130.315 1 20 0 O06 A1LYJ 401 C 1 
HETATM 10 N N07 A1LYJ . . . H 2 127.402 101.52 126.07 1 20 0 N07 A1LYJ 401 C 1 
HETATM 11 C C08 A1LYJ . . . H 2 127.45 102.137 131.257 1 20 0 C08 A1LYJ 401 C 1 
HETATM 12 C C09 A1LYJ . . . H 2 128.163 101.476 132.439 1 20 0 C09 A1LYJ 401 C 1 
HETATM 13 C C11 A1LYJ . . . H 2 129.579 101.496 134.701 1 20 0 C11 A1LYJ 401 C 1 
HETATM 14 C C12 A1LYJ . . . H 2 129.663 100.018 134.809 1 20 0 C12 A1LYJ 401 C 1 
HETATM 15 C C14 A1LYJ . . . H 2 128.229 99.965 132.529 1 20 0 C14 A1LYJ 401 C 1 
HETATM 16 O O15 A1LYJ . . . H 2 128.836 103.674 133.541 1 20 0 O15 A1LYJ 401 C 1 
HETATM 17 O O16 A1LYJ . . . H 2 130.223 102.085 135.753 1 20 0 O16 A1LYJ 401 C 1 
HETATM 18 C C18 A1LYJ . . . H 2 127.813 104.261 134.355 1 20 0 C18 A1LYJ 401 C 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           365 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           18 
#