data_8XDD # _model_server_result.job_id uZDCWc5doXbW0wMyoBYjpQ _model_server_result.datetime_utc '2024-12-23 07:09:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xdd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 8XDD # _exptl.entry_id 8XDD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 137.179 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(3-methoxyphenyl)methanamine _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C02 8HC . A 8HC 401 1_555 E N SZ4 . A SZ4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 F C02 8HC . B 8HC 401 1_555 G N SZ4 . B SZ4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 H C02 8HC . C 8HC 401 1_555 I N SZ4 . C SZ4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C8 H11 N O' _chem_comp.formula_weight 137.179 _chem_comp.id SZ4 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(3-methoxyphenyl)methanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C1 SZ4 sing 310 n n O C6 SZ4 sing 311 n n O C7 SZ4 sing 312 n n C1 C2 SZ4 sing 313 n n C2 C3 SZ4 doub 314 n y C2 C8 SZ4 sing 315 n y C3 C4 SZ4 sing 316 n y C4 C5 SZ4 doub 317 n y C5 C6 SZ4 sing 318 n y C6 C8 SZ4 doub 319 n y N HN SZ4 sing 320 n n N HNA SZ4 sing 321 n n C1 H1 SZ4 sing 322 n n C1 H1A SZ4 sing 323 n n C3 H3 SZ4 sing 324 n n C4 H4 SZ4 sing 325 n n C5 H5 SZ4 sing 326 n n C7 H7 SZ4 sing 327 n n C7 H7A SZ4 sing 328 n n C7 H7B SZ4 sing 329 n n C8 H8 SZ4 sing 330 n n # _atom_sites.entry_id 8XDD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 8HC A 1 401 401 8HC LIG . E 3 SZ4 A 1 402 401 SZ4 LIG . F 2 8HC B 1 401 401 8HC LIG . G 3 SZ4 B 1 402 401 SZ4 LIG . H 2 8HC C 1 401 401 8HC LIG . I 3 SZ4 C 1 402 401 SZ4 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SZ4 . . . E 3 111.187 132.809 129.754 1 20 0 N SZ4 402 A 1 HETATM 2 O O SZ4 . . . E 3 112.188 138.098 128.832 1 20 0 O SZ4 402 A 1 HETATM 3 C C1 SZ4 . . . E 3 112.514 133.336 129.995 1 20 0 C1 SZ4 402 A 1 HETATM 4 C C2 SZ4 . . . E 3 112.421 134.797 130.415 1 20 0 C2 SZ4 402 A 1 HETATM 5 C C3 SZ4 . . . E 3 112.414 135.139 131.755 1 20 0 C3 SZ4 402 A 1 HETATM 6 C C4 SZ4 . . . E 3 112.332 136.47 132.126 1 20 0 C4 SZ4 402 A 1 HETATM 7 C C5 SZ4 . . . E 3 112.257 137.455 131.156 1 20 0 C5 SZ4 402 A 1 HETATM 8 C C6 SZ4 . . . E 3 112.264 137.109 129.817 1 20 0 C6 SZ4 402 A 1 HETATM 9 C C7 SZ4 . . . E 3 112.175 137.593 127.528 1 20 0 C7 SZ4 402 A 1 HETATM 10 C C8 SZ4 . . . E 3 112.347 135.78 129.446 1 20 0 C8 SZ4 402 A 1 # _model_server_stats.io_time_ms 113 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #