data_8XDN
#
_model_server_result.job_id            3LGNaSVx2WXMzQUGXlrobA 
_model_server_result.datetime_utc      '2025-09-14 07:08:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xdn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":201}' 
#
_entry.id    8XDN 
#
_exptl.entry_id    8XDN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              790.145 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8XDN 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8XDN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C44 H88 N O8 P' 
_chem_comp.formula_weight    790.145 
_chem_comp.id                PC1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLCHOLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P PC1 sing 258 n n 
P O14 PC1 doub 259 n n 
P O13 PC1 sing 260 n n 
P O11 PC1 sing 261 n n 
O13 C11 PC1 sing 262 n n 
C11 C12 PC1 sing 263 n n 
C11 H111 PC1 sing 264 n n 
C11 H112 PC1 sing 265 n n 
C12 N PC1 sing 266 n n 
C12 H121 PC1 sing 267 n n 
C12 H122 PC1 sing 268 n n 
N C13 PC1 sing 269 n n 
N C14 PC1 sing 270 n n 
N C15 PC1 sing 271 n n 
C13 H131 PC1 sing 272 n n 
C13 H132 PC1 sing 273 n n 
C13 H133 PC1 sing 274 n n 
C14 H141 PC1 sing 275 n n 
C14 H142 PC1 sing 276 n n 
C14 H143 PC1 sing 277 n n 
C15 H151 PC1 sing 278 n n 
C15 H152 PC1 sing 279 n n 
C15 H153 PC1 sing 280 n n 
O11 C1 PC1 sing 281 n n 
C1 C2 PC1 sing 282 n n 
C1 H11 PC1 sing 283 n n 
C1 H12 PC1 sing 284 n n 
C2 O21 PC1 sing 285 n n 
C2 C3 PC1 sing 286 n n 
C2 H2 PC1 sing 287 n n 
O21 C21 PC1 sing 288 n n 
C21 O22 PC1 doub 289 n n 
C21 C22 PC1 sing 290 n n 
C22 C23 PC1 sing 291 n n 
C22 H221 PC1 sing 292 n n 
C22 H222 PC1 sing 293 n n 
C23 C24 PC1 sing 294 n n 
C23 H231 PC1 sing 295 n n 
C23 H232 PC1 sing 296 n n 
C24 C25 PC1 sing 297 n n 
C24 H241 PC1 sing 298 n n 
C24 H242 PC1 sing 299 n n 
C25 C26 PC1 sing 300 n n 
C25 H251 PC1 sing 301 n n 
C25 H252 PC1 sing 302 n n 
C26 C27 PC1 sing 303 n n 
C26 H261 PC1 sing 304 n n 
C26 H262 PC1 sing 305 n n 
C27 C28 PC1 sing 306 n n 
C27 H271 PC1 sing 307 n n 
C27 H272 PC1 sing 308 n n 
C28 C29 PC1 sing 309 n n 
C28 H281 PC1 sing 310 n n 
C28 H282 PC1 sing 311 n n 
C29 C2A PC1 sing 312 n n 
C29 H291 PC1 sing 313 n n 
C29 H292 PC1 sing 314 n n 
C2A C2B PC1 sing 315 n n 
C2A H2A1 PC1 sing 316 n n 
C2A H2A2 PC1 sing 317 n n 
C2B C2C PC1 sing 318 n n 
C2B H2B1 PC1 sing 319 n n 
C2B H2B2 PC1 sing 320 n n 
C2C C2D PC1 sing 321 n n 
C2C H2C1 PC1 sing 322 n n 
C2C H2C2 PC1 sing 323 n n 
C2D C2E PC1 sing 324 n n 
C2D H2D1 PC1 sing 325 n n 
C2D H2D2 PC1 sing 326 n n 
C2E C2F PC1 sing 327 n n 
C2E H2E1 PC1 sing 328 n n 
C2E H2E2 PC1 sing 329 n n 
C2F C2G PC1 sing 330 n n 
C2F H2F1 PC1 sing 331 n n 
C2F H2F2 PC1 sing 332 n n 
C2G C2H PC1 sing 333 n n 
C2G H2G1 PC1 sing 334 n n 
C2G H2G2 PC1 sing 335 n n 
C2H C2I PC1 sing 336 n n 
C2H H2H1 PC1 sing 337 n n 
C2H H2H2 PC1 sing 338 n n 
C2I H2I1 PC1 sing 339 n n 
C2I H2I2 PC1 sing 340 n n 
C2I H2I3 PC1 sing 341 n n 
C3 O31 PC1 sing 342 n n 
C3 H31 PC1 sing 343 n n 
C3 H32 PC1 sing 344 n n 
O31 C31 PC1 sing 345 n n 
C31 O32 PC1 doub 346 n n 
C31 C32 PC1 sing 347 n n 
C32 C33 PC1 sing 348 n n 
C32 H321 PC1 sing 349 n n 
C32 H322 PC1 sing 350 n n 
C33 C34 PC1 sing 351 n n 
C33 H331 PC1 sing 352 n n 
C33 H332 PC1 sing 353 n n 
C34 C35 PC1 sing 354 n n 
C34 H341 PC1 sing 355 n n 
C34 H342 PC1 sing 356 n n 
C35 C36 PC1 sing 357 n n 
C35 H351 PC1 sing 358 n n 
C35 H352 PC1 sing 359 n n 
C36 C37 PC1 sing 360 n n 
C36 H361 PC1 sing 361 n n 
C36 H362 PC1 sing 362 n n 
C37 C38 PC1 sing 363 n n 
C37 H371 PC1 sing 364 n n 
C37 H372 PC1 sing 365 n n 
C38 C39 PC1 sing 366 n n 
C38 H381 PC1 sing 367 n n 
C38 H382 PC1 sing 368 n n 
C39 C3A PC1 sing 369 n n 
C39 H391 PC1 sing 370 n n 
C39 H392 PC1 sing 371 n n 
C3A C3B PC1 sing 372 n n 
C3A H3A1 PC1 sing 373 n n 
C3A H3A2 PC1 sing 374 n n 
C3B C3C PC1 sing 375 n n 
C3B H3B1 PC1 sing 376 n n 
C3B H3B2 PC1 sing 377 n n 
C3C C3D PC1 sing 378 n n 
C3C H3C1 PC1 sing 379 n n 
C3C H3C2 PC1 sing 380 n n 
C3D C3E PC1 sing 381 n n 
C3D H3D1 PC1 sing 382 n n 
C3D H3D2 PC1 sing 383 n n 
C3E C3F PC1 sing 384 n n 
C3E H3E1 PC1 sing 385 n n 
C3E H3E2 PC1 sing 386 n n 
C3F C3G PC1 sing 387 n n 
C3F H3F1 PC1 sing 388 n n 
C3F H3F2 PC1 sing 389 n n 
C3G C3H PC1 sing 390 n n 
C3G H3G1 PC1 sing 391 n n 
C3G H3G2 PC1 sing 392 n n 
C3H C3I PC1 sing 393 n n 
C3H H3H1 PC1 sing 394 n n 
C3H H3H2 PC1 sing 395 n n 
C3I H3I1 PC1 sing 396 n n 
C3I H3I2 PC1 sing 397 n n 
C3I H3I3 PC1 sing 398 n n 
#
_atom_sites.entry_id                     8XDN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 6 FUD A 1 401 403 FUD FUD . 
L 7 PC1 C 1 201 402 PC1 PC1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 PC1 . . . L 7 156.771 131.594 137.654 1 85.23 ? O12 PC1 201 C 1 
HETATM 2 P P PC1 . . . L 7 156.225 132.942 137.331 1 93.12 ? P PC1 201 C 1 
HETATM 3 O O14 PC1 . . . L 7 156.6 134.186 138.062 1 83.84 ? O14 PC1 201 C 1 
HETATM 4 O O13 PC1 . . . L 7 156.485 133.281 135.736 1 84.82 ? O13 PC1 201 C 1 
HETATM 5 C C11 PC1 . . . L 7 156.943 134.559 135.371 1 85.27 ? C11 PC1 201 C 1 
HETATM 6 C C12 PC1 . . . L 7 158.29 134.304 134.71 1 89.29 ? C12 PC1 201 C 1 
HETATM 7 N N PC1 . . . L 7 159.351 135.35 134.907 1 94.64 ? N PC1 201 C 1 
HETATM 8 C C13 PC1 . . . L 7 159.693 136.026 133.625 1 92.81 ? C13 PC1 201 C 1 
HETATM 9 C C14 PC1 . . . L 7 160.569 134.658 135.415 1 94.13 ? C14 PC1 201 C 1 
HETATM 10 C C15 PC1 . . . L 7 158.949 136.375 135.91 1 95.24 ? C15 PC1 201 C 1 
HETATM 11 O O11 PC1 . . . L 7 154.598 132.749 137.337 1 81.3 ? O11 PC1 201 C 1 
HETATM 12 C C1 PC1 . . . L 7 154.023 131.745 136.535 1 71.77 ? C1 PC1 201 C 1 
HETATM 13 C C2 PC1 . . . L 7 152.542 132.034 136.405 1 64.94 ? C2 PC1 201 C 1 
HETATM 14 O O21 PC1 . . . L 7 152.25 133.4 136.697 1 62.1 ? O21 PC1 201 C 1 
HETATM 15 C C21 PC1 . . . L 7 152.489 134.354 135.805 1 63.55 ? C21 PC1 201 C 1 
HETATM 16 O O22 PC1 . . . L 7 153.457 134.395 135.094 1 68.6 ? O22 PC1 201 C 1 
HETATM 17 C C22 PC1 . . . L 7 151.387 135.369 135.824 1 57.62 ? C22 PC1 201 C 1 
HETATM 18 C C23 PC1 . . . L 7 150.005 134.768 135.645 1 52.31 ? C23 PC1 201 C 1 
HETATM 19 C C24 PC1 . . . L 7 148.927 135.839 135.701 1 47.34 ? C24 PC1 201 C 1 
HETATM 20 C C25 PC1 . . . L 7 149.48 137.255 135.631 1 46.54 ? C25 PC1 201 C 1 
HETATM 21 C C26 PC1 . . . L 7 148.423 138.29 135.969 1 41.09 ? C26 PC1 201 C 1 
HETATM 22 C C27 PC1 . . . L 7 147.09 137.982 135.306 1 41.81 ? C27 PC1 201 C 1 
HETATM 23 C C28 PC1 . . . L 7 146.004 138.952 135.73 1 39.47 ? C28 PC1 201 C 1 
HETATM 24 C C29 PC1 . . . L 7 146.515 140.378 135.793 1 36.74 ? C29 PC1 201 C 1 
HETATM 25 C C2A PC1 . . . L 7 145.652 141.243 136.691 1 40.07 ? C2A PC1 201 C 1 
HETATM 26 C C2B PC1 . . . L 7 144.183 141.218 136.301 1 38.02 ? C2B PC1 201 C 1 
HETATM 27 C C2C PC1 . . . L 7 143.305 142.07 137.207 1 37.69 ? C2C PC1 201 C 1 
HETATM 28 C C2D PC1 . . . L 7 142.047 142.598 136.533 1 35.34 ? C2D PC1 201 C 1 
HETATM 29 C C2E PC1 . . . L 7 141.317 141.548 135.71 1 32.8 ? C2E PC1 201 C 1 
HETATM 30 C C2F PC1 . . . L 7 141.44 141.758 134.21 1 30.91 ? C2F PC1 201 C 1 
HETATM 31 C C2G PC1 . . . L 7 141.202 140.485 133.414 1 31.5 ? C2G PC1 201 C 1 
HETATM 32 C C2H PC1 . . . L 7 142.382 140.079 132.542 1 28.93 ? C2H PC1 201 C 1 
HETATM 33 C C2I PC1 . . . L 7 141.944 139.653 131.152 1 19.87 ? C2I PC1 201 C 1 
HETATM 34 C C3 PC1 . . . L 7 151.757 131.237 137.417 1 62.06 ? C3 PC1 201 C 1 
HETATM 35 O O31 PC1 . . . L 7 150.413 131.125 136.965 1 60.26 ? O31 PC1 201 C 1 
HETATM 36 C C31 PC1 . . . L 7 149.735 130.014 137.249 1 54.24 ? C31 PC1 201 C 1 
HETATM 37 O O32 PC1 . . . L 7 148.542 130.003 137.417 1 50.62 ? O32 PC1 201 C 1 
HETATM 38 C C32 PC1 . . . L 7 150.625 128.804 137.325 1 55.36 ? C32 PC1 201 C 1 
HETATM 39 C C33 PC1 . . . L 7 149.931 127.554 137.843 1 52.88 ? C33 PC1 201 C 1 
HETATM 40 C C34 PC1 . . . L 7 150.101 126.383 136.885 1 51.09 ? C34 PC1 201 C 1 
HETATM 41 C C35 PC1 . . . L 7 148.813 125.602 136.676 1 49.59 ? C35 PC1 201 C 1 
HETATM 42 C C36 PC1 . . . L 7 147.587 126.503 136.625 1 45.48 ? C36 PC1 201 C 1 
HETATM 43 C C37 PC1 . . . L 7 146.268 125.768 136.444 1 43.38 ? C37 PC1 201 C 1 
HETATM 44 C C38 PC1 . . . L 7 146.314 124.317 136.899 1 42.45 ? C38 PC1 201 C 1 
HETATM 45 C C39 PC1 . . . L 7 146.295 123.31 135.757 1 44.95 ? C39 PC1 201 C 1 
HETATM 46 C C3A PC1 . . . L 7 145.308 122.175 135.97 1 45.48 ? C3A PC1 201 C 1 
HETATM 47 C C3B PC1 . . . L 7 144.058 122.276 135.111 1 40.51 ? C3B PC1 201 C 1 
HETATM 48 C C3C PC1 . . . L 7 143.105 123.369 135.567 1 38.34 ? C3C PC1 201 C 1 
HETATM 49 C C3D PC1 . . . L 7 141.779 122.84 136.091 1 38.55 ? C3D PC1 201 C 1 
HETATM 50 C C3E PC1 . . . L 7 141.259 123.593 137.309 1 38.26 ? C3E PC1 201 C 1 
HETATM 51 C C3F PC1 . . . L 7 142.336 124.362 138.065 1 39.52 ? C3F PC1 201 C 1 
HETATM 52 C C3G PC1 . . . L 7 142.408 124.008 139.544 1 41.06 ? C3G PC1 201 C 1 
HETATM 53 C C3H PC1 . . . L 7 142.859 125.166 140.425 1 31.02 ? C3H PC1 201 C 1 
HETATM 54 C C3I PC1 . . . L 7 141.703 125.809 141.177 1 25.37 ? C3I PC1 201 C 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           54 
#