data_8XDY
#
_model_server_result.job_id            FxOv0zAznyt2FB5CyZzb7A 
_model_server_result.datetime_utc      '2024-12-11 22:18:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xdy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":504}' 
#
_entry.id    8XDY 
#
_exptl.entry_id    8XDY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8XDY 
_cell.length_a            49.857 
_cell.length_b            81.492 
_cell.length_c            117.872 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8XDY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab (z,x,y)' 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 158 A ASP 155 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc2 A OD2 ASP 184 A ASP 181 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? 
metalc ? metalc3 A OD1 ASN 185 A ASN 182 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc4 C MG MG . A MG 301 1_555 K O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc5 C MG MG . A MG 301 1_555 K O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc6 C MG MG . A MG 301 1_555 K O HOH . A HOH 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc7 B OD1 ASP 158 B ASP 155 1_555 I MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc8 B OD2 ASP 184 B ASP 181 1_555 I MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc9 B OD1 ASN 185 B ASN 182 1_555 I MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc10 H O3 H6N . B H6N 503 1_555 I MG MG . B MG 504 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc11 H O3 H6N . B H6N 503 1_555 I MG MG . B MG 504 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc12 H O4 H6N . B H6N 503 1_555 I MG MG . B MG 504 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc13 H O4 H6N . B H6N 503 1_555 I MG MG . B MG 504 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc14 I MG MG . B MG 504 1_555 L O HOH . B HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8XDY 
_atom_sites.fract_transf_matrix[1][1]    0.020057 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012271 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008484 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 301 301 MG MG . 
D 3 SAH A 1 302 401 SAH SAH . 
E 4 GOL A 1 303 501 GOL GOL . 
F 5 TRS B 1 501 501 TRS TRS . 
G 4 GOL B 1 502 601 GOL GOL . 
H 6 H6N B 1 503 701 H6N LIG . 
I 2 MG B 1 504 301 MG MG . 
J 3 SAH B 1 505 401 SAH SAH . 
K 7 HOH A 1 401 126 HOH HOH . 
K 7 HOH A 2 402 213 HOH HOH . 
K 7 HOH A 3 403 10 HOH HOH . 
K 7 HOH A 4 404 45 HOH HOH . 
K 7 HOH A 5 405 104 HOH HOH . 
K 7 HOH A 6 406 3 HOH HOH . 
K 7 HOH A 7 407 81 HOH HOH . 
K 7 HOH A 8 408 147 HOH HOH . 
K 7 HOH A 9 409 221 HOH HOH . 
K 7 HOH A 10 410 183 HOH HOH . 
K 7 HOH A 11 411 41 HOH HOH . 
K 7 HOH A 12 412 218 HOH HOH . 
K 7 HOH A 13 413 118 HOH HOH . 
K 7 HOH A 14 414 176 HOH HOH . 
K 7 HOH A 15 415 119 HOH HOH . 
K 7 HOH A 16 416 90 HOH HOH . 
K 7 HOH A 17 417 22 HOH HOH . 
K 7 HOH A 18 418 48 HOH HOH . 
K 7 HOH A 19 419 71 HOH HOH . 
K 7 HOH A 20 420 76 HOH HOH . 
K 7 HOH A 21 421 87 HOH HOH . 
K 7 HOH A 22 422 65 HOH HOH . 
K 7 HOH A 23 423 56 HOH HOH . 
K 7 HOH A 24 424 136 HOH HOH . 
K 7 HOH A 25 425 69 HOH HOH . 
K 7 HOH A 26 426 32 HOH HOH . 
K 7 HOH A 27 427 40 HOH HOH . 
K 7 HOH A 28 428 30 HOH HOH . 
K 7 HOH A 29 429 142 HOH HOH . 
K 7 HOH A 30 430 61 HOH HOH . 
K 7 HOH A 31 431 139 HOH HOH . 
K 7 HOH A 32 432 33 HOH HOH . 
K 7 HOH A 33 433 211 HOH HOH . 
K 7 HOH A 34 434 25 HOH HOH . 
K 7 HOH A 35 435 35 HOH HOH . 
K 7 HOH A 36 436 8 HOH HOH . 
K 7 HOH A 37 437 194 HOH HOH . 
K 7 HOH A 38 438 14 HOH HOH . 
K 7 HOH A 39 439 31 HOH HOH . 
K 7 HOH A 40 440 146 HOH HOH . 
K 7 HOH A 41 441 123 HOH HOH . 
K 7 HOH A 42 442 29 HOH HOH . 
K 7 HOH A 43 443 162 HOH HOH . 
K 7 HOH A 44 444 15 HOH HOH . 
K 7 HOH A 45 445 12 HOH HOH . 
K 7 HOH A 46 446 86 HOH HOH . 
K 7 HOH A 47 447 95 HOH HOH . 
K 7 HOH A 48 448 18 HOH HOH . 
K 7 HOH A 49 449 85 HOH HOH . 
K 7 HOH A 50 450 120 HOH HOH . 
K 7 HOH A 51 451 215 HOH HOH . 
K 7 HOH A 52 452 214 HOH HOH . 
K 7 HOH A 53 453 84 HOH HOH . 
K 7 HOH A 54 454 72 HOH HOH . 
K 7 HOH A 55 455 132 HOH HOH . 
K 7 HOH A 56 456 23 HOH HOH . 
K 7 HOH A 57 457 150 HOH HOH . 
K 7 HOH A 58 458 134 HOH HOH . 
K 7 HOH A 59 459 62 HOH HOH . 
K 7 HOH A 60 460 138 HOH HOH . 
K 7 HOH A 61 461 133 HOH HOH . 
K 7 HOH A 62 462 125 HOH HOH . 
K 7 HOH A 63 463 164 HOH HOH . 
K 7 HOH A 64 464 27 HOH HOH . 
K 7 HOH A 65 465 169 HOH HOH . 
K 7 HOH A 66 466 98 HOH HOH . 
K 7 HOH A 67 467 91 HOH HOH . 
K 7 HOH A 68 468 157 HOH HOH . 
K 7 HOH A 69 469 43 HOH HOH . 
K 7 HOH A 70 470 245 HOH HOH . 
K 7 HOH A 71 471 114 HOH HOH . 
K 7 HOH A 72 472 212 HOH HOH . 
K 7 HOH A 73 473 228 HOH HOH . 
K 7 HOH A 74 474 177 HOH HOH . 
K 7 HOH A 75 475 112 HOH HOH . 
K 7 HOH A 76 476 19 HOH HOH . 
K 7 HOH A 77 477 202 HOH HOH . 
K 7 HOH A 78 478 171 HOH HOH . 
K 7 HOH A 79 479 11 HOH HOH . 
K 7 HOH A 80 480 94 HOH HOH . 
K 7 HOH A 81 481 53 HOH HOH . 
K 7 HOH A 82 482 63 HOH HOH . 
K 7 HOH A 83 483 159 HOH HOH . 
K 7 HOH A 84 484 149 HOH HOH . 
K 7 HOH A 85 485 224 HOH HOH . 
K 7 HOH A 86 486 143 HOH HOH . 
K 7 HOH A 87 487 21 HOH HOH . 
K 7 HOH A 88 488 152 HOH HOH . 
K 7 HOH A 89 489 89 HOH HOH . 
K 7 HOH A 90 490 203 HOH HOH . 
K 7 HOH A 91 491 101 HOH HOH . 
K 7 HOH A 92 492 168 HOH HOH . 
K 7 HOH A 93 493 247 HOH HOH . 
K 7 HOH A 94 494 205 HOH HOH . 
K 7 HOH A 95 495 75 HOH HOH . 
K 7 HOH A 96 496 191 HOH HOH . 
K 7 HOH A 97 497 197 HOH HOH . 
K 7 HOH A 98 498 231 HOH HOH . 
K 7 HOH A 99 499 223 HOH HOH . 
K 7 HOH A 100 500 236 HOH HOH . 
K 7 HOH A 101 501 124 HOH HOH . 
K 7 HOH A 102 502 172 HOH HOH . 
K 7 HOH A 103 503 187 HOH HOH . 
K 7 HOH A 104 504 106 HOH HOH . 
K 7 HOH A 105 505 135 HOH HOH . 
K 7 HOH A 106 506 54 HOH HOH . 
K 7 HOH A 107 507 181 HOH HOH . 
K 7 HOH A 108 508 222 HOH HOH . 
K 7 HOH A 109 509 225 HOH HOH . 
K 7 HOH A 110 510 97 HOH HOH . 
K 7 HOH A 111 511 59 HOH HOH . 
K 7 HOH A 112 512 154 HOH HOH . 
K 7 HOH A 113 513 78 HOH HOH . 
K 7 HOH A 114 514 116 HOH HOH . 
K 7 HOH A 115 515 189 HOH HOH . 
K 7 HOH A 116 516 234 HOH HOH . 
K 7 HOH A 117 517 243 HOH HOH . 
K 7 HOH A 118 518 167 HOH HOH . 
K 7 HOH A 119 519 145 HOH HOH . 
K 7 HOH A 120 520 244 HOH HOH . 
K 7 HOH A 121 521 220 HOH HOH . 
K 7 HOH A 122 522 190 HOH HOH . 
K 7 HOH A 123 523 184 HOH HOH . 
K 7 HOH A 124 524 37 HOH HOH . 
K 7 HOH A 125 525 237 HOH HOH . 
K 7 HOH A 126 526 110 HOH HOH . 
K 7 HOH A 127 527 219 HOH HOH . 
K 7 HOH A 128 528 182 HOH HOH . 
K 7 HOH A 129 529 192 HOH HOH . 
L 7 HOH B 1 601 198 HOH HOH . 
L 7 HOH B 2 602 58 HOH HOH . 
L 7 HOH B 3 603 60 HOH HOH . 
L 7 HOH B 4 604 170 HOH HOH . 
L 7 HOH B 5 605 196 HOH HOH . 
L 7 HOH B 6 606 24 HOH HOH . 
L 7 HOH B 7 607 42 HOH HOH . 
L 7 HOH B 8 608 141 HOH HOH . 
L 7 HOH B 9 609 130 HOH HOH . 
L 7 HOH B 10 610 129 HOH HOH . 
L 7 HOH B 11 611 83 HOH HOH . 
L 7 HOH B 12 612 144 HOH HOH . 
L 7 HOH B 13 613 7 HOH HOH . 
L 7 HOH B 14 614 248 HOH HOH . 
L 7 HOH B 15 615 137 HOH HOH . 
L 7 HOH B 16 616 105 HOH HOH . 
L 7 HOH B 17 617 49 HOH HOH . 
L 7 HOH B 18 618 20 HOH HOH . 
L 7 HOH B 19 619 50 HOH HOH . 
L 7 HOH B 20 620 74 HOH HOH . 
L 7 HOH B 21 621 46 HOH HOH . 
L 7 HOH B 22 622 140 HOH HOH . 
L 7 HOH B 23 623 44 HOH HOH . 
L 7 HOH B 24 624 230 HOH HOH . 
L 7 HOH B 25 625 79 HOH HOH . 
L 7 HOH B 26 626 128 HOH HOH . 
L 7 HOH B 27 627 13 HOH HOH . 
L 7 HOH B 28 628 5 HOH HOH . 
L 7 HOH B 29 629 36 HOH HOH . 
L 7 HOH B 30 630 16 HOH HOH . 
L 7 HOH B 31 631 26 HOH HOH . 
L 7 HOH B 32 632 4 HOH HOH . 
L 7 HOH B 33 633 38 HOH HOH . 
L 7 HOH B 34 634 96 HOH HOH . 
L 7 HOH B 35 635 200 HOH HOH . 
L 7 HOH B 36 636 28 HOH HOH . 
L 7 HOH B 37 637 209 HOH HOH . 
L 7 HOH B 38 638 92 HOH HOH . 
L 7 HOH B 39 639 57 HOH HOH . 
L 7 HOH B 40 640 93 HOH HOH . 
L 7 HOH B 41 641 107 HOH HOH . 
L 7 HOH B 42 642 68 HOH HOH . 
L 7 HOH B 43 643 9 HOH HOH . 
L 7 HOH B 44 644 64 HOH HOH . 
L 7 HOH B 45 645 204 HOH HOH . 
L 7 HOH B 46 646 6 HOH HOH . 
L 7 HOH B 47 647 249 HOH HOH . 
L 7 HOH B 48 648 115 HOH HOH . 
L 7 HOH B 49 649 82 HOH HOH . 
L 7 HOH B 50 650 121 HOH HOH . 
L 7 HOH B 51 651 109 HOH HOH . 
L 7 HOH B 52 652 117 HOH HOH . 
L 7 HOH B 53 653 210 HOH HOH . 
L 7 HOH B 54 654 55 HOH HOH . 
L 7 HOH B 55 655 17 HOH HOH . 
L 7 HOH B 56 656 100 HOH HOH . 
L 7 HOH B 57 657 160 HOH HOH . 
L 7 HOH B 58 658 77 HOH HOH . 
L 7 HOH B 59 659 99 HOH HOH . 
L 7 HOH B 60 660 188 HOH HOH . 
L 7 HOH B 61 661 155 HOH HOH . 
L 7 HOH B 62 662 73 HOH HOH . 
L 7 HOH B 63 663 103 HOH HOH . 
L 7 HOH B 64 664 88 HOH HOH . 
L 7 HOH B 65 665 70 HOH HOH . 
L 7 HOH B 66 666 52 HOH HOH . 
L 7 HOH B 67 667 80 HOH HOH . 
L 7 HOH B 68 668 206 HOH HOH . 
L 7 HOH B 69 669 67 HOH HOH . 
L 7 HOH B 70 670 122 HOH HOH . 
L 7 HOH B 71 671 233 HOH HOH . 
L 7 HOH B 72 672 131 HOH HOH . 
L 7 HOH B 73 673 175 HOH HOH . 
L 7 HOH B 74 674 156 HOH HOH . 
L 7 HOH B 75 675 165 HOH HOH . 
L 7 HOH B 76 676 240 HOH HOH . 
L 7 HOH B 77 677 173 HOH HOH . 
L 7 HOH B 78 678 229 HOH HOH . 
L 7 HOH B 79 679 111 HOH HOH . 
L 7 HOH B 80 680 174 HOH HOH . 
L 7 HOH B 81 681 185 HOH HOH . 
L 7 HOH B 82 682 232 HOH HOH . 
L 7 HOH B 83 683 166 HOH HOH . 
L 7 HOH B 84 684 151 HOH HOH . 
L 7 HOH B 85 685 227 HOH HOH . 
L 7 HOH B 86 686 199 HOH HOH . 
L 7 HOH B 87 687 250 HOH HOH . 
L 7 HOH B 88 688 239 HOH HOH . 
L 7 HOH B 89 689 161 HOH HOH . 
L 7 HOH B 90 690 238 HOH HOH . 
L 7 HOH B 91 691 242 HOH HOH . 
L 7 HOH B 92 692 216 HOH HOH . 
L 7 HOH B 93 693 226 HOH HOH . 
L 7 HOH B 94 694 148 HOH HOH . 
L 7 HOH B 95 695 66 HOH HOH . 
L 7 HOH B 96 696 208 HOH HOH . 
L 7 HOH B 97 697 180 HOH HOH . 
L 7 HOH B 98 698 246 HOH HOH . 
L 7 HOH B 99 699 195 HOH HOH . 
L 7 HOH B 100 700 163 HOH HOH . 
L 7 HOH B 101 701 201 HOH HOH . 
L 7 HOH B 102 702 193 HOH HOH . 
L 7 HOH B 103 703 179 HOH HOH . 
L 7 HOH B 104 704 241 HOH HOH . 
L 7 HOH B 105 705 153 HOH HOH . 
L 7 HOH B 106 706 207 HOH HOH . 
L 7 HOH B 107 707 113 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               13.935 
_atom_site.Cartn_y               6.881 
_atom_site.Cartn_z               42.391 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        24.33 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           504 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#