data_8XE0 # _model_server_result.job_id x-TXIReCKJ7U54gc8sKPhg _model_server_result.datetime_utc '2024-12-11 23:14:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xe0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8XE0 # _exptl.entry_id 8XE0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XE0 _cell.length_a 50.421 _cell.length_b 80.862 _cell.length_c 116.597 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XE0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 158 A ASP 155 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc2 A OD2 ASP 184 A ASP 181 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc3 A OD1 ASN 185 A ASN 182 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc4 C O3 H6N . A H6N 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc5 C O4 H6N . A H6N 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc6 D MG MG . A MG 502 1_555 H O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc7 B OD1 ASP 158 B ASP 155 1_555 F MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc8 B OD2 ASP 184 B ASP 181 1_555 F MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc9 B OD1 ASN 185 B ASN 182 1_555 F MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc10 F MG MG . B MG 301 1_555 I O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc11 F MG MG . B MG 301 1_555 I O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc12 F MG MG . B MG 301 1_555 I O HOH . B HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8XE0 _atom_sites.fract_transf_matrix[1][1] 0.019833 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008577 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 H6N A 1 501 501 H6N LIG . D 3 MG A 1 502 301 MG MG . E 4 SAH A 1 503 401 SAH SAH . F 3 MG B 1 301 301 MG MG . G 4 SAH B 1 302 401 SAH SAH . H 5 HOH A 1 601 14 HOH HOH . H 5 HOH A 2 602 34 HOH HOH . H 5 HOH A 3 603 38 HOH HOH . H 5 HOH A 4 604 32 HOH HOH . H 5 HOH A 5 605 71 HOH HOH . H 5 HOH A 6 606 28 HOH HOH . H 5 HOH A 7 607 15 HOH HOH . H 5 HOH A 8 608 5 HOH HOH . H 5 HOH A 9 609 51 HOH HOH . H 5 HOH A 10 610 3 HOH HOH . H 5 HOH A 11 611 60 HOH HOH . H 5 HOH A 12 612 2 HOH HOH . H 5 HOH A 13 613 52 HOH HOH . H 5 HOH A 14 614 16 HOH HOH . H 5 HOH A 15 615 73 HOH HOH . H 5 HOH A 16 616 58 HOH HOH . H 5 HOH A 17 617 49 HOH HOH . H 5 HOH A 18 618 8 HOH HOH . H 5 HOH A 19 619 45 HOH HOH . H 5 HOH A 20 620 11 HOH HOH . H 5 HOH A 21 621 44 HOH HOH . H 5 HOH A 22 622 39 HOH HOH . H 5 HOH A 23 623 41 HOH HOH . H 5 HOH A 24 624 35 HOH HOH . H 5 HOH A 25 625 13 HOH HOH . H 5 HOH A 26 626 55 HOH HOH . H 5 HOH A 27 627 30 HOH HOH . H 5 HOH A 28 628 59 HOH HOH . H 5 HOH A 29 629 27 HOH HOH . H 5 HOH A 30 630 21 HOH HOH . H 5 HOH A 31 631 63 HOH HOH . H 5 HOH A 32 632 78 HOH HOH . H 5 HOH A 33 633 80 HOH HOH . H 5 HOH A 34 634 31 HOH HOH . H 5 HOH A 35 635 79 HOH HOH . H 5 HOH A 36 636 48 HOH HOH . H 5 HOH A 37 637 82 HOH HOH . I 5 HOH B 1 401 64 HOH HOH . I 5 HOH B 2 402 1 HOH HOH . I 5 HOH B 3 403 37 HOH HOH . I 5 HOH B 4 404 17 HOH HOH . I 5 HOH B 5 405 67 HOH HOH . I 5 HOH B 6 406 42 HOH HOH . I 5 HOH B 7 407 10 HOH HOH . I 5 HOH B 8 408 70 HOH HOH . I 5 HOH B 9 409 24 HOH HOH . I 5 HOH B 10 410 19 HOH HOH . I 5 HOH B 11 411 61 HOH HOH . I 5 HOH B 12 412 26 HOH HOH . I 5 HOH B 13 413 33 HOH HOH . I 5 HOH B 14 414 18 HOH HOH . I 5 HOH B 15 415 76 HOH HOH . I 5 HOH B 16 416 12 HOH HOH . I 5 HOH B 17 417 53 HOH HOH . I 5 HOH B 18 418 40 HOH HOH . I 5 HOH B 19 419 57 HOH HOH . I 5 HOH B 20 420 50 HOH HOH . I 5 HOH B 21 421 6 HOH HOH . I 5 HOH B 22 422 43 HOH HOH . I 5 HOH B 23 423 4 HOH HOH . I 5 HOH B 24 424 65 HOH HOH . I 5 HOH B 25 425 47 HOH HOH . I 5 HOH B 26 426 9 HOH HOH . I 5 HOH B 27 427 77 HOH HOH . I 5 HOH B 28 428 68 HOH HOH . I 5 HOH B 29 429 7 HOH HOH . I 5 HOH B 30 430 22 HOH HOH . I 5 HOH B 31 431 25 HOH HOH . I 5 HOH B 32 432 56 HOH HOH . I 5 HOH B 33 433 69 HOH HOH . I 5 HOH B 34 434 85 HOH HOH . I 5 HOH B 35 435 23 HOH HOH . I 5 HOH B 36 436 46 HOH HOH . I 5 HOH B 37 437 36 HOH HOH . I 5 HOH B 38 438 66 HOH HOH . I 5 HOH B 39 439 74 HOH HOH . I 5 HOH B 40 440 20 HOH HOH . I 5 HOH B 41 441 83 HOH HOH . I 5 HOH B 42 442 75 HOH HOH . I 5 HOH B 43 443 72 HOH HOH . I 5 HOH B 44 444 84 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 2.465 _atom_site.Cartn_y 7.885 _atom_site.Cartn_z 15.319 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #