data_8XE2 # _model_server_result.job_id LllNhCJYClUZvXvkkttzlg _model_server_result.datetime_utc '2024-12-04 10:01:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xe2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 8XE2 # _exptl.entry_id 8XE2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.372 _cell.angle_gamma 90 _cell.entry_id 8XE2 _cell.length_a 49.514 _cell.length_b 81.596 _cell.length_c 116.427 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XE2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,Q 1 1 C,M,N,S 1 2 D,O,P,T 2 1 B,J,K,L,R 2 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_646 -x+1,y-1/2,-z+1 -1 0 0 0 1 0 0 0 -1 46.726315 -40.798 116.393622 3 'crystal symmetry operation' 2_645 -x+1,y-1/2,-z -1 0 0 0 1 0 0 0 -1 49.514 -40.798 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 M N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 158 A ASP 155 1_555 G MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc2 A OD2 ASP 184 A ASP 181 1_555 G MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc3 A OD1 ASN 185 A ASN 182 1_555 G MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc4 G MG MG . A MG 603 1_555 I O3 H6N . A H6N 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc5 G MG MG . A MG 603 1_555 I O4 H6N . A H6N 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc6 G MG MG . A MG 603 1_555 Q O HOH . A HOH 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 B OD1 ASP 158 B ASP 155 1_555 J MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc8 B OD2 ASP 158 B ASP 155 1_555 J MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc9 B OD2 ASP 184 B ASP 181 1_555 J MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc10 B OD1 ASN 185 B ASN 182 1_555 J MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc11 J MG MG . B MG 301 1_555 L O3 H6N . B H6N 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc12 J MG MG . B MG 301 1_555 L O4 H6N . B H6N 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc13 J MG MG . B MG 301 1_555 R O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc14 C OD1 ASP 158 C ASP 155 1_555 M MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc15 C OD2 ASP 184 C ASP 181 1_555 M MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc16 C OD1 ASN 185 C ASN 182 1_555 M MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc17 M MG MG . C MG 301 1_555 S O HOH . C HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc18 M MG MG . C MG 301 1_555 S O HOH . C HOH 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc19 D OD1 ASP 158 D ASP 155 1_555 O MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc20 D OD2 ASP 158 D ASP 155 1_555 O MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc21 D OD2 ASP 184 D ASP 181 1_555 O MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc22 D OD1 ASN 185 D ASN 182 1_555 O MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc23 O MG MG . D MG 301 1_555 T O HOH . D HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc24 O MG MG . D MG 301 1_555 T O HOH . D HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8XE2 _atom_sites.fract_transf_matrix[1][1] 0.020196 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000484 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL A 1 601 601 GOL GOL . F 2 GOL A 1 602 701 GOL GOL . G 3 MG A 1 603 301 MG MG . H 4 SAH A 1 604 401 SAH SAH . I 5 H6N A 1 605 501 H6N LIG . J 3 MG B 1 301 301 MG MG . K 4 SAH B 1 302 401 SAH SAH . L 5 H6N B 1 303 501 H6N LIG . M 3 MG C 1 301 301 MG MG . N 4 SAH C 1 302 401 SAH SAH . O 3 MG D 1 301 301 MG MG . P 4 SAH D 1 302 401 SAH SAH . Q 6 HOH A 1 701 135 HOH HOH . Q 6 HOH A 2 702 176 HOH HOH . Q 6 HOH A 3 703 106 HOH HOH . Q 6 HOH A 4 704 1 HOH HOH . Q 6 HOH A 5 705 58 HOH HOH . Q 6 HOH A 6 706 90 HOH HOH . Q 6 HOH A 7 707 2 HOH HOH . Q 6 HOH A 8 708 51 HOH HOH . Q 6 HOH A 9 709 95 HOH HOH . Q 6 HOH A 10 710 63 HOH HOH . Q 6 HOH A 11 711 197 HOH HOH . Q 6 HOH A 12 712 9 HOH HOH . Q 6 HOH A 13 713 62 HOH HOH . Q 6 HOH A 14 714 87 HOH HOH . Q 6 HOH A 15 715 110 HOH HOH . Q 6 HOH A 16 716 96 HOH HOH . Q 6 HOH A 17 717 65 HOH HOH . Q 6 HOH A 18 718 85 HOH HOH . Q 6 HOH A 19 719 44 HOH HOH . Q 6 HOH A 20 720 141 HOH HOH . Q 6 HOH A 21 721 47 HOH HOH . Q 6 HOH A 22 722 148 HOH HOH . Q 6 HOH A 23 723 121 HOH HOH . Q 6 HOH A 24 724 171 HOH HOH . Q 6 HOH A 25 725 209 HOH HOH . Q 6 HOH A 26 726 92 HOH HOH . Q 6 HOH A 27 727 53 HOH HOH . Q 6 HOH A 28 728 4 HOH HOH . Q 6 HOH A 29 729 211 HOH HOH . Q 6 HOH A 30 730 167 HOH HOH . Q 6 HOH A 31 731 94 HOH HOH . Q 6 HOH A 32 732 19 HOH HOH . Q 6 HOH A 33 733 7 HOH HOH . Q 6 HOH A 34 734 15 HOH HOH . Q 6 HOH A 35 735 57 HOH HOH . Q 6 HOH A 36 736 131 HOH HOH . Q 6 HOH A 37 737 55 HOH HOH . Q 6 HOH A 38 738 134 HOH HOH . Q 6 HOH A 39 739 103 HOH HOH . Q 6 HOH A 40 740 86 HOH HOH . Q 6 HOH A 41 741 11 HOH HOH . Q 6 HOH A 42 742 206 HOH HOH . Q 6 HOH A 43 743 221 HOH HOH . Q 6 HOH A 44 744 127 HOH HOH . Q 6 HOH A 45 745 224 HOH HOH . Q 6 HOH A 46 746 153 HOH HOH . Q 6 HOH A 47 747 101 HOH HOH . Q 6 HOH A 48 748 97 HOH HOH . Q 6 HOH A 49 749 164 HOH HOH . Q 6 HOH A 50 750 26 HOH HOH . Q 6 HOH A 51 751 185 HOH HOH . Q 6 HOH A 52 752 223 HOH HOH . Q 6 HOH A 53 753 102 HOH HOH . Q 6 HOH A 54 754 225 HOH HOH . Q 6 HOH A 55 755 169 HOH HOH . Q 6 HOH A 56 756 124 HOH HOH . Q 6 HOH A 57 757 218 HOH HOH . Q 6 HOH A 58 758 228 HOH HOH . Q 6 HOH A 59 759 205 HOH HOH . Q 6 HOH A 60 760 166 HOH HOH . Q 6 HOH A 61 761 227 HOH HOH . Q 6 HOH A 62 762 226 HOH HOH . Q 6 HOH A 63 763 229 HOH HOH . R 6 HOH B 1 401 5 HOH HOH . R 6 HOH B 2 402 37 HOH HOH . R 6 HOH B 3 403 99 HOH HOH . R 6 HOH B 4 404 140 HOH HOH . R 6 HOH B 5 405 112 HOH HOH . R 6 HOH B 6 406 192 HOH HOH . R 6 HOH B 7 407 23 HOH HOH . R 6 HOH B 8 408 93 HOH HOH . R 6 HOH B 9 409 34 HOH HOH . R 6 HOH B 10 410 177 HOH HOH . R 6 HOH B 11 411 159 HOH HOH . R 6 HOH B 12 412 216 HOH HOH . R 6 HOH B 13 413 31 HOH HOH . R 6 HOH B 14 414 182 HOH HOH . R 6 HOH B 15 415 165 HOH HOH . R 6 HOH B 16 416 152 HOH HOH . R 6 HOH B 17 417 38 HOH HOH . R 6 HOH B 18 418 188 HOH HOH . R 6 HOH B 19 419 17 HOH HOH . R 6 HOH B 20 420 151 HOH HOH . R 6 HOH B 21 421 68 HOH HOH . R 6 HOH B 22 422 81 HOH HOH . R 6 HOH B 23 423 25 HOH HOH . R 6 HOH B 24 424 158 HOH HOH . R 6 HOH B 25 425 154 HOH HOH . R 6 HOH B 26 426 186 HOH HOH . R 6 HOH B 27 427 82 HOH HOH . R 6 HOH B 28 428 174 HOH HOH . R 6 HOH B 29 429 118 HOH HOH . R 6 HOH B 30 430 50 HOH HOH . R 6 HOH B 31 431 213 HOH HOH . R 6 HOH B 32 432 200 HOH HOH . R 6 HOH B 33 433 3 HOH HOH . R 6 HOH B 34 434 195 HOH HOH . R 6 HOH B 35 435 212 HOH HOH . R 6 HOH B 36 436 230 HOH HOH . R 6 HOH B 37 437 125 HOH HOH . R 6 HOH B 38 438 198 HOH HOH . R 6 HOH B 39 439 173 HOH HOH . R 6 HOH B 40 440 196 HOH HOH . R 6 HOH B 41 441 231 HOH HOH . R 6 HOH B 42 442 214 HOH HOH . R 6 HOH B 43 443 83 HOH HOH . R 6 HOH B 44 444 191 HOH HOH . S 6 HOH C 1 401 98 HOH HOH . S 6 HOH C 2 402 66 HOH HOH . S 6 HOH C 3 403 91 HOH HOH . S 6 HOH C 4 404 61 HOH HOH . S 6 HOH C 5 405 54 HOH HOH . S 6 HOH C 6 406 56 HOH HOH . S 6 HOH C 7 407 123 HOH HOH . S 6 HOH C 8 408 109 HOH HOH . S 6 HOH C 9 409 181 HOH HOH . S 6 HOH C 10 410 35 HOH HOH . S 6 HOH C 11 411 22 HOH HOH . S 6 HOH C 12 412 115 HOH HOH . S 6 HOH C 13 413 64 HOH HOH . S 6 HOH C 14 414 67 HOH HOH . S 6 HOH C 15 415 203 HOH HOH . S 6 HOH C 16 416 30 HOH HOH . S 6 HOH C 17 417 217 HOH HOH . S 6 HOH C 18 418 49 HOH HOH . S 6 HOH C 19 419 172 HOH HOH . S 6 HOH C 20 420 72 HOH HOH . S 6 HOH C 21 421 117 HOH HOH . S 6 HOH C 22 422 179 HOH HOH . S 6 HOH C 23 423 27 HOH HOH . S 6 HOH C 24 424 160 HOH HOH . S 6 HOH C 25 425 18 HOH HOH . S 6 HOH C 26 426 16 HOH HOH . S 6 HOH C 27 427 70 HOH HOH . S 6 HOH C 28 428 8 HOH HOH . S 6 HOH C 29 429 132 HOH HOH . S 6 HOH C 30 430 144 HOH HOH . S 6 HOH C 31 431 80 HOH HOH . S 6 HOH C 32 432 129 HOH HOH . S 6 HOH C 33 433 219 HOH HOH . S 6 HOH C 34 434 39 HOH HOH . S 6 HOH C 35 435 41 HOH HOH . S 6 HOH C 36 436 161 HOH HOH . S 6 HOH C 37 437 143 HOH HOH . S 6 HOH C 38 438 33 HOH HOH . S 6 HOH C 39 439 88 HOH HOH . S 6 HOH C 40 440 194 HOH HOH . S 6 HOH C 41 441 113 HOH HOH . S 6 HOH C 42 442 75 HOH HOH . S 6 HOH C 43 443 150 HOH HOH . S 6 HOH C 44 444 74 HOH HOH . S 6 HOH C 45 445 178 HOH HOH . S 6 HOH C 46 446 133 HOH HOH . S 6 HOH C 47 447 13 HOH HOH . S 6 HOH C 48 448 199 HOH HOH . S 6 HOH C 49 449 220 HOH HOH . S 6 HOH C 50 450 128 HOH HOH . S 6 HOH C 51 451 180 HOH HOH . S 6 HOH C 52 452 108 HOH HOH . S 6 HOH C 53 453 73 HOH HOH . S 6 HOH C 54 454 79 HOH HOH . S 6 HOH C 55 455 168 HOH HOH . S 6 HOH C 56 456 207 HOH HOH . S 6 HOH C 57 457 184 HOH HOH . S 6 HOH C 58 458 204 HOH HOH . T 6 HOH D 1 401 14 HOH HOH . T 6 HOH D 2 402 20 HOH HOH . T 6 HOH D 3 403 84 HOH HOH . T 6 HOH D 4 404 10 HOH HOH . T 6 HOH D 5 405 89 HOH HOH . T 6 HOH D 6 406 126 HOH HOH . T 6 HOH D 7 407 12 HOH HOH . T 6 HOH D 8 408 156 HOH HOH . T 6 HOH D 9 409 170 HOH HOH . T 6 HOH D 10 410 28 HOH HOH . T 6 HOH D 11 411 215 HOH HOH . T 6 HOH D 12 412 46 HOH HOH . T 6 HOH D 13 413 139 HOH HOH . T 6 HOH D 14 414 193 HOH HOH . T 6 HOH D 15 415 222 HOH HOH . T 6 HOH D 16 416 40 HOH HOH . T 6 HOH D 17 417 130 HOH HOH . T 6 HOH D 18 418 45 HOH HOH . T 6 HOH D 19 419 43 HOH HOH . T 6 HOH D 20 420 6 HOH HOH . T 6 HOH D 21 421 149 HOH HOH . T 6 HOH D 22 422 136 HOH HOH . T 6 HOH D 23 423 122 HOH HOH . T 6 HOH D 24 424 60 HOH HOH . T 6 HOH D 25 425 21 HOH HOH . T 6 HOH D 26 426 77 HOH HOH . T 6 HOH D 27 427 202 HOH HOH . T 6 HOH D 28 428 120 HOH HOH . T 6 HOH D 29 429 138 HOH HOH . T 6 HOH D 30 430 119 HOH HOH . T 6 HOH D 31 431 155 HOH HOH . T 6 HOH D 32 432 71 HOH HOH . T 6 HOH D 33 433 32 HOH HOH . T 6 HOH D 34 434 100 HOH HOH . T 6 HOH D 35 435 116 HOH HOH . T 6 HOH D 36 436 183 HOH HOH . T 6 HOH D 37 437 59 HOH HOH . T 6 HOH D 38 438 114 HOH HOH . T 6 HOH D 39 439 210 HOH HOH . T 6 HOH D 40 440 52 HOH HOH . T 6 HOH D 41 441 163 HOH HOH . T 6 HOH D 42 442 208 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x 21.854 _atom_site.Cartn_y 11.307 _atom_site.Cartn_z 13.565 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #