data_8XF1
#
_model_server_result.job_id            3X4F7vafAUsVHhztPji8Rw 
_model_server_result.datetime_utc      '2024-10-18 16:27:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xf1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    8XF1 
#
_exptl.entry_id    8XF1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              588.694 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHYCOCYANOBILIN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8XF1 
_cell.length_a            38.491 
_cell.length_b            145.059 
_cell.length_c            66.129 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8XF1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 145.059 66.129 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 71 A GLY 71 1_555 A N MEN 72 A MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C MEN 72 A MEN 72 1_555 A N ALA 73 A ALA 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale3 A SG CYS 82 A CYS 82 1_555 B CAC CYC . A CYC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? 
covale ? covale4 A SG CYS 153 A CYS 153 1_555 C CAC CYC . A CYC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
#
_chem_comp.formula           'C33 H40 N4 O6' 
_chem_comp.formula_weight    588.694 
_chem_comp.id                CYC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHYCOCYANOBILIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A CYC doub 70 z n 
CHA C4D CYC sing 71 n n 
CHA HHA CYC sing 72 n n 
NA C1A CYC sing 73 n n 
NA C4A CYC doub 74 n n 
C1A C2A CYC sing 75 n n 
C2A C3A CYC doub 76 n n 
C2A CAA CYC sing 77 n n 
C3A C4A CYC sing 78 n n 
C3A CMA CYC sing 79 n n 
C4A CHB CYC sing 80 n n 
CMA HMA1 CYC sing 81 n n 
CMA HMA2 CYC sing 82 n n 
CMA HMA3 CYC sing 83 n n 
CAA CBA CYC sing 84 n n 
CAA HAA1 CYC sing 85 n n 
CAA HAA2 CYC sing 86 n n 
CBA CGA CYC sing 87 n n 
CBA HBA1 CYC sing 88 n n 
CBA HBA2 CYC sing 89 n n 
CGA O1A CYC doub 90 n n 
CGA O2A CYC sing 91 n n 
O2A H2A CYC sing 92 n n 
CHB C1B CYC doub 93 z n 
CHB HHB CYC sing 94 n n 
NB C1B CYC sing 95 n n 
NB C4B CYC sing 96 n n 
NB HB CYC sing 97 n n 
C1B C2B CYC sing 98 n n 
C2B C3B CYC doub 99 n n 
C2B CMB CYC sing 100 n n 
C3B C4B CYC sing 101 n n 
C3B CAB CYC sing 102 n n 
C4B OB CYC doub 103 n n 
CMB HMB1 CYC sing 104 n n 
CMB HMB2 CYC sing 105 n n 
CMB HMB3 CYC sing 106 n n 
CAB CBB CYC sing 107 n n 
CAB HAB1 CYC sing 108 n n 
CAB HAB2 CYC sing 109 n n 
CBB HBB1 CYC sing 110 n n 
CBB HBB2 CYC sing 111 n n 
CBB HBB3 CYC sing 112 n n 
NC C1C CYC sing 113 n n 
NC C4C CYC sing 114 n n 
NC HC CYC sing 115 n n 
C1C C2C CYC sing 116 n n 
C1C OC CYC doub 117 n n 
C2C C3C CYC sing 118 n n 
C2C CMC CYC sing 119 n n 
C2C H2C CYC sing 120 n n 
C3C C4C CYC sing 121 n n 
C3C CAC CYC sing 122 n n 
C3C H3C CYC sing 123 n n 
C4C CHD CYC doub 124 z n 
CMC HMC1 CYC sing 125 n n 
CMC HMC2 CYC sing 126 n n 
CMC HMC3 CYC sing 127 n n 
CAC CBC CYC sing 128 n n 
CAC HAC1 CYC sing 129 n n 
CAC HAC2 CYC sing 130 n n 
CBC HBC1 CYC sing 131 n n 
CBC HBC2 CYC sing 132 n n 
CBC HBC3 CYC sing 133 n n 
CHD C1D CYC sing 134 n n 
CHD HHD CYC sing 135 n n 
ND C1D CYC sing 136 n y 
ND C4D CYC sing 137 n y 
ND HD CYC sing 138 n n 
C1D C2D CYC doub 139 n y 
C2D C3D CYC sing 140 n y 
C2D CMD CYC sing 141 n n 
C3D C4D CYC doub 142 n y 
C3D CAD CYC sing 143 n n 
CMD HMD1 CYC sing 144 n n 
CMD HMD2 CYC sing 145 n n 
CMD HMD3 CYC sing 146 n n 
CAD CBD CYC sing 147 n n 
CAD HAD1 CYC sing 148 n n 
CAD HAD2 CYC sing 149 n n 
CBD CGD CYC sing 150 n n 
CBD HBD1 CYC sing 151 n n 
CBD HBD2 CYC sing 152 n n 
CGD O1D CYC doub 153 n n 
CGD O2D CYC sing 154 n n 
O2D H2D CYC sing 155 n n 
#
_atom_sites.entry_id                     8XF1 
_atom_sites.fract_transf_matrix[1][1]    0.02598 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006894 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015122 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CYC A 1 201 284 CYC CYC . 
C 2 CYC A 1 202 355 CYC CYC . 
D 3 HOH A 1 301 86 HOH HOH . 
D 3 HOH A 2 302 18 HOH HOH . 
D 3 HOH A 3 303 26 HOH HOH . 
D 3 HOH A 4 304 52 HOH HOH . 
D 3 HOH A 5 305 78 HOH HOH . 
D 3 HOH A 6 306 24 HOH HOH . 
D 3 HOH A 7 307 32 HOH HOH . 
D 3 HOH A 8 308 65 HOH HOH . 
D 3 HOH A 9 309 27 HOH HOH . 
D 3 HOH A 10 310 64 HOH HOH . 
D 3 HOH A 11 311 73 HOH HOH . 
D 3 HOH A 12 312 11 HOH HOH . 
D 3 HOH A 13 313 56 HOH HOH . 
D 3 HOH A 14 314 2 HOH HOH . 
D 3 HOH A 15 315 71 HOH HOH . 
D 3 HOH A 16 316 29 HOH HOH . 
D 3 HOH A 17 317 17 HOH HOH . 
D 3 HOH A 18 318 16 HOH HOH . 
D 3 HOH A 19 319 51 HOH HOH . 
D 3 HOH A 20 320 55 HOH HOH . 
D 3 HOH A 21 321 46 HOH HOH . 
D 3 HOH A 22 322 13 HOH HOH . 
D 3 HOH A 23 323 50 HOH HOH . 
D 3 HOH A 24 324 72 HOH HOH . 
D 3 HOH A 25 325 34 HOH HOH . 
D 3 HOH A 26 326 82 HOH HOH . 
D 3 HOH A 27 327 40 HOH HOH . 
D 3 HOH A 28 328 84 HOH HOH . 
D 3 HOH A 29 329 12 HOH HOH . 
D 3 HOH A 30 330 62 HOH HOH . 
D 3 HOH A 31 331 22 HOH HOH . 
D 3 HOH A 32 332 21 HOH HOH . 
D 3 HOH A 33 333 79 HOH HOH . 
D 3 HOH A 34 334 28 HOH HOH . 
D 3 HOH A 35 335 33 HOH HOH . 
D 3 HOH A 36 336 35 HOH HOH . 
D 3 HOH A 37 337 23 HOH HOH . 
D 3 HOH A 38 338 1 HOH HOH . 
D 3 HOH A 39 339 91 HOH HOH . 
D 3 HOH A 40 340 6 HOH HOH . 
D 3 HOH A 41 341 4 HOH HOH . 
D 3 HOH A 42 342 19 HOH HOH . 
D 3 HOH A 43 343 31 HOH HOH . 
D 3 HOH A 44 344 44 HOH HOH . 
D 3 HOH A 45 345 5 HOH HOH . 
D 3 HOH A 46 346 20 HOH HOH . 
D 3 HOH A 47 347 58 HOH HOH . 
D 3 HOH A 48 348 98 HOH HOH . 
D 3 HOH A 49 349 43 HOH HOH . 
D 3 HOH A 50 350 76 HOH HOH . 
D 3 HOH A 51 351 90 HOH HOH . 
D 3 HOH A 52 352 37 HOH HOH . 
D 3 HOH A 53 353 63 HOH HOH . 
D 3 HOH A 54 354 7 HOH HOH . 
D 3 HOH A 55 355 8 HOH HOH . 
D 3 HOH A 56 356 45 HOH HOH . 
D 3 HOH A 57 357 3 HOH HOH . 
D 3 HOH A 58 358 42 HOH HOH . 
D 3 HOH A 59 359 30 HOH HOH . 
D 3 HOH A 60 360 15 HOH HOH . 
D 3 HOH A 61 361 74 HOH HOH . 
D 3 HOH A 62 362 69 HOH HOH . 
D 3 HOH A 63 363 36 HOH HOH . 
D 3 HOH A 64 364 53 HOH HOH . 
D 3 HOH A 65 365 47 HOH HOH . 
D 3 HOH A 66 366 70 HOH HOH . 
D 3 HOH A 67 367 9 HOH HOH . 
D 3 HOH A 68 368 93 HOH HOH . 
D 3 HOH A 69 369 68 HOH HOH . 
D 3 HOH A 70 370 54 HOH HOH . 
D 3 HOH A 71 371 41 HOH HOH . 
D 3 HOH A 72 372 67 HOH HOH . 
D 3 HOH A 73 373 85 HOH HOH . 
D 3 HOH A 74 374 25 HOH HOH . 
D 3 HOH A 75 375 81 HOH HOH . 
D 3 HOH A 76 376 39 HOH HOH . 
D 3 HOH A 77 377 100 HOH HOH . 
D 3 HOH A 78 378 48 HOH HOH . 
D 3 HOH A 79 379 97 HOH HOH . 
D 3 HOH A 80 380 14 HOH HOH . 
D 3 HOH A 81 381 57 HOH HOH . 
D 3 HOH A 82 382 99 HOH HOH . 
D 3 HOH A 83 383 95 HOH HOH . 
D 3 HOH A 84 384 77 HOH HOH . 
D 3 HOH A 85 385 80 HOH HOH . 
D 3 HOH A 86 386 89 HOH HOH . 
D 3 HOH A 87 387 59 HOH HOH . 
D 3 HOH A 88 388 96 HOH HOH . 
D 3 HOH A 89 389 38 HOH HOH . 
D 3 HOH A 90 390 83 HOH HOH . 
D 3 HOH A 91 391 87 HOH HOH . 
D 3 HOH A 92 392 94 HOH HOH . 
D 3 HOH A 93 393 10 HOH HOH . 
D 3 HOH A 94 394 75 HOH HOH . 
D 3 HOH A 95 395 66 HOH HOH . 
D 3 HOH A 96 396 49 HOH HOH . 
D 3 HOH A 97 397 61 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA CYC . . . C 2 16.73 68.24 35.425 1 40.58 ? CHA CYC 202 A 1 
HETATM 2 N NA CYC . . . C 2 15.383 66.706 33.857 1 43.36 ? NA CYC 202 A 1 
HETATM 3 C C1A CYC . . . C 2 16.053 67.981 34.31 1 42.44 ? C1A CYC 202 A 1 
HETATM 4 C C2A CYC . . . C 2 15.876 69.001 33.177 1 43.48 ? C2A CYC 202 A 1 
HETATM 5 C C3A CYC . . . C 2 15.111 68.379 32.091 1 47.43 ? C3A CYC 202 A 1 
HETATM 6 C C4A CYC . . . C 2 14.824 66.97 32.515 1 41.41 ? C4A CYC 202 A 1 
HETATM 7 C CMA CYC . . . C 2 14.703 69.066 30.767 1 40.42 ? CMA CYC 202 A 1 
HETATM 8 C CAA CYC . . . C 2 16.41 70.459 33.189 1 38.82 ? CAA CYC 202 A 1 
HETATM 9 C CBA CYC . . . C 2 17.764 70.49 32.426 1 52.22 ? CBA CYC 202 A 1 
HETATM 10 C CGA CYC . . . C 2 18.77 69.493 33.049 1 50.76 ? CGA CYC 202 A 1 
HETATM 11 O O1A CYC . . . C 2 19.227 69.716 34.209 1 44.39 ? O1A CYC 202 A 1 
HETATM 12 O O2A CYC . . . C 2 19.134 68.463 32.398 1 48.37 ? O2A CYC 202 A 1 
HETATM 13 C CHB CYC . . . C 2 14.037 65.94 31.712 1 39.59 ? CHB CYC 202 A 1 
HETATM 14 N NB CYC . . . C 2 15.331 66.303 29.482 1 48.44 ? NB CYC 202 A 1 
HETATM 15 C C1B CYC . . . C 2 14.326 65.654 30.447 1 45.44 ? C1B CYC 202 A 1 
HETATM 16 C C2B CYC . . . C 2 13.671 64.558 29.697 1 46.74 ? C2B CYC 202 A 1 
HETATM 17 C C3B CYC . . . C 2 14.183 64.49 28.358 1 54.06 ? C3B CYC 202 A 1 
HETATM 18 C C4B CYC . . . C 2 15.224 65.553 28.141 1 53.2 ? C4B CYC 202 A 1 
HETATM 19 C CMB CYC . . . C 2 12.594 63.665 30.353 1 40.91 ? CMB CYC 202 A 1 
HETATM 20 C CAB CYC . . . C 2 13.733 63.458 27.29 1 52.54 ? CAB CYC 202 A 1 
HETATM 21 C CBB CYC . . . C 2 14.843 62.389 27.2 1 49.82 ? CBB CYC 202 A 1 
HETATM 22 O OB CYC . . . C 2 15.855 65.78 27.155 1 60.06 ? OB CYC 202 A 1 
HETATM 23 N NC CYC . . . C 2 18.198 64.18 39.79 1 42.45 ? NC CYC 202 A 1 
HETATM 24 C C1C CYC . . . C 2 18.592 63.476 40.866 1 42.88 ? C1C CYC 202 A 1 
HETATM 25 C C2C CYC . . . C 2 17.551 62.353 41.104 1 45.3 ? C2C CYC 202 A 1 
HETATM 26 C C3C CYC . . . C 2 16.6 62.407 39.868 1 44.59 ? C3C CYC 202 A 1 
HETATM 27 C C4C CYC . . . C 2 16.848 63.661 39.217 1 46.79 ? C4C CYC 202 A 1 
HETATM 28 C CMC CYC . . . C 2 18.277 61.062 41.168 1 43.63 ? CMC CYC 202 A 1 
HETATM 29 C CAC CYC . . . C 2 15.132 62.367 40.384 1 41.81 ? CAC CYC 202 A 1 
HETATM 30 C CBC CYC . . . C 2 14.267 61.494 39.455 1 37.82 ? CBC CYC 202 A 1 
HETATM 31 O OC CYC . . . C 2 19.586 63.663 41.497 1 47.25 ? OC CYC 202 A 1 
HETATM 32 C CHD CYC . . . C 2 15.979 64.408 38.484 1 47.5 ? CHD CYC 202 A 1 
HETATM 33 N ND CYC . . . C 2 16.337 66.324 36.712 1 46.74 ? ND CYC 202 A 1 
HETATM 34 C C1D CYC . . . C 2 16.313 65.868 38.02 1 42.43 ? C1D CYC 202 A 1 
HETATM 35 C C2D CYC . . . C 2 16.644 66.936 38.881 1 43.79 ? C2D CYC 202 A 1 
HETATM 36 C C3D CYC . . . C 2 16.865 68.034 38.137 1 44.76 ? C3D CYC 202 A 1 
HETATM 37 C C4D CYC . . . C 2 16.652 67.654 36.858 1 48.17 ? C4D CYC 202 A 1 
HETATM 38 C CMD CYC . . . C 2 16.745 66.931 40.419 1 43.13 ? CMD CYC 202 A 1 
HETATM 39 C CAD CYC . . . C 2 17.236 69.469 38.569 1 36.22 ? CAD CYC 202 A 1 
HETATM 40 C CBD CYC . . . C 2 15.867 70.148 38.781 1 42.32 ? CBD CYC 202 A 1 
HETATM 41 C CGD CYC . . . C 2 16.155 71.453 39.537 1 50.64 ? CGD CYC 202 A 1 
HETATM 42 O O1D CYC . . . C 2 15.966 71.512 40.795 1 48.66 ? O1D CYC 202 A 1 
HETATM 43 O O2D CYC . . . C 2 16.586 72.435 38.863 1 43.01 ? O2D CYC 202 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           240 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#