data_8XF4 # _model_server_result.job_id DLHD4QB4zqTvGsFLAjry0Q _model_server_result.datetime_utc '2024-11-26 03:24:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xf4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8XF4 # _exptl.entry_id 8XF4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XF4 _cell.length_a 59.974 _cell.length_b 62.099 _cell.length_c 67.926 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O10 OX8 . A OX8 401 1_555 D FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? metalc ? metalc2 B O28 OX8 . A OX8 401 1_555 D FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc3 B O23 OX8 . A OX8 401 1_555 E FE FE . A FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc4 B O27 OX8 . A OX8 401 1_555 E FE FE . A FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc5 C N11 OX8 . A OX8 402 1_555 E FE FE . A FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc6 C O10 OX8 . A OX8 402 1_555 E FE FE . A FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc7 C O23 OX8 . A OX8 402 1_555 E FE FE . A FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc8 C O27 OX8 . A OX8 402 1_555 E FE FE . A FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc9 C O28 OX8 . A OX8 402 1_555 E FE FE . A FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8XF4 _atom_sites.fract_transf_matrix[1][1] 0.016674 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016103 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014722 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OX8 A 1 401 1 OX8 BIS . C 2 OX8 A 1 402 2 OX8 BIS . D 3 FE A 1 403 3 FE FE . E 3 FE A 1 404 4 FE FE . F 4 HOH A 1 501 48 HOH HOH . F 4 HOH A 2 502 35 HOH HOH . F 4 HOH A 3 503 44 HOH HOH . F 4 HOH A 4 504 6 HOH HOH . F 4 HOH A 5 505 62 HOH HOH . F 4 HOH A 6 506 59 HOH HOH . F 4 HOH A 7 507 80 HOH HOH . F 4 HOH A 8 508 31 HOH HOH . F 4 HOH A 9 509 12 HOH HOH . F 4 HOH A 10 510 27 HOH HOH . F 4 HOH A 11 511 43 HOH HOH . F 4 HOH A 12 512 19 HOH HOH . F 4 HOH A 13 513 55 HOH HOH . F 4 HOH A 14 514 32 HOH HOH . F 4 HOH A 15 515 93 HOH HOH . F 4 HOH A 16 516 28 HOH HOH . F 4 HOH A 17 517 39 HOH HOH . F 4 HOH A 18 518 76 HOH HOH . F 4 HOH A 19 519 16 HOH HOH . F 4 HOH A 20 520 73 HOH HOH . F 4 HOH A 21 521 77 HOH HOH . F 4 HOH A 22 522 42 HOH HOH . F 4 HOH A 23 523 37 HOH HOH . F 4 HOH A 24 524 88 HOH HOH . F 4 HOH A 25 525 33 HOH HOH . F 4 HOH A 26 526 5 HOH HOH . F 4 HOH A 27 527 50 HOH HOH . F 4 HOH A 28 528 21 HOH HOH . F 4 HOH A 29 529 72 HOH HOH . F 4 HOH A 30 530 74 HOH HOH . F 4 HOH A 31 531 15 HOH HOH . F 4 HOH A 32 532 11 HOH HOH . F 4 HOH A 33 533 24 HOH HOH . F 4 HOH A 34 534 3 HOH HOH . F 4 HOH A 35 535 8 HOH HOH . F 4 HOH A 36 536 13 HOH HOH . F 4 HOH A 37 537 9 HOH HOH . F 4 HOH A 38 538 22 HOH HOH . F 4 HOH A 39 539 91 HOH HOH . F 4 HOH A 40 540 89 HOH HOH . F 4 HOH A 41 541 26 HOH HOH . F 4 HOH A 42 542 69 HOH HOH . F 4 HOH A 43 543 85 HOH HOH . F 4 HOH A 44 544 82 HOH HOH . F 4 HOH A 45 545 87 HOH HOH . F 4 HOH A 46 546 14 HOH HOH . F 4 HOH A 47 547 68 HOH HOH . F 4 HOH A 48 548 70 HOH HOH . F 4 HOH A 49 549 45 HOH HOH . F 4 HOH A 50 550 65 HOH HOH . F 4 HOH A 51 551 10 HOH HOH . F 4 HOH A 52 552 66 HOH HOH . F 4 HOH A 53 553 41 HOH HOH . F 4 HOH A 54 554 83 HOH HOH . F 4 HOH A 55 555 67 HOH HOH . F 4 HOH A 56 556 47 HOH HOH . F 4 HOH A 57 557 1 HOH HOH . F 4 HOH A 58 558 2 HOH HOH . F 4 HOH A 59 559 64 HOH HOH . F 4 HOH A 60 560 54 HOH HOH . F 4 HOH A 61 561 92 HOH HOH . F 4 HOH A 62 562 53 HOH HOH . F 4 HOH A 63 563 52 HOH HOH . F 4 HOH A 64 564 40 HOH HOH . F 4 HOH A 65 565 29 HOH HOH . F 4 HOH A 66 566 36 HOH HOH . F 4 HOH A 67 567 49 HOH HOH . F 4 HOH A 68 568 71 HOH HOH . F 4 HOH A 69 569 75 HOH HOH . F 4 HOH A 70 570 61 HOH HOH . F 4 HOH A 71 571 34 HOH HOH . F 4 HOH A 72 572 4 HOH HOH . F 4 HOH A 73 573 7 HOH HOH . F 4 HOH A 74 574 25 HOH HOH . F 4 HOH A 75 575 46 HOH HOH . F 4 HOH A 76 576 56 HOH HOH . F 4 HOH A 77 577 17 HOH HOH . F 4 HOH A 78 578 78 HOH HOH . F 4 HOH A 79 579 20 HOH HOH . F 4 HOH A 80 580 84 HOH HOH . F 4 HOH A 81 581 18 HOH HOH . F 4 HOH A 82 582 81 HOH HOH . F 4 HOH A 83 583 57 HOH HOH . F 4 HOH A 84 584 90 HOH HOH . F 4 HOH A 85 585 58 HOH HOH . F 4 HOH A 86 586 23 HOH HOH . F 4 HOH A 87 587 86 HOH HOH . F 4 HOH A 88 588 63 HOH HOH . F 4 HOH A 89 589 79 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 16.028 _atom_site.Cartn_y 8.833 _atom_site.Cartn_z 5.961 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 76.09 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #