data_8XFM
#
_model_server_result.job_id            WULVNXe3WBd39rjgKizU-w 
_model_server_result.datetime_utc      '2024-10-18 06:20:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xfm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    8XFM 
#
_exptl.entry_id    8XFM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              350.802 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-(3-azanyl-1~{H}-indazol-6-yl)-1-[(3-chlorophenyl)methyl]pyridin-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8XFM 
_cell.length_a            103.859 
_cell.length_b            103.859 
_cell.length_c            73.29 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8XFM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 228 A CYS 299 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc2 A SG CYS 232 A CYS 303 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc3 A SG CYS 240 A CYS 311 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc4 A SG CYS 243 A CYS 314 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
#
_chem_comp.formula           'C19 H15 Cl N4 O' 
_chem_comp.formula_weight    350.802 
_chem_comp.id                A1LU6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-(3-azanyl-1~{H}-indazol-6-yl)-1-[(3-chlorophenyl)methyl]pyridin-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL C17 A1LU6 sing 1 n n 
C17 C16 A1LU6 sing 2 n y 
C17 C18 A1LU6 doub 3 n y 
C16 C15 A1LU6 doub 4 n y 
C15 C14 A1LU6 sing 5 n y 
C14 C13 A1LU6 doub 6 n y 
C18 C13 A1LU6 sing 7 n y 
C13 C12 A1LU6 sing 8 n n 
C12 N3 A1LU6 sing 9 n n 
N3 C A1LU6 sing 10 n n 
N3 C11 A1LU6 sing 11 n n 
C O A1LU6 doub 12 n n 
C C1 A1LU6 sing 13 n n 
C11 C3 A1LU6 doub 14 n n 
C3 C2 A1LU6 sing 15 n n 
C3 C4 A1LU6 sing 16 n n 
C2 C1 A1LU6 doub 17 n n 
C4 C9 A1LU6 sing 18 n y 
C4 C5 A1LU6 doub 19 n y 
C9 C8 A1LU6 doub 20 n y 
C8 C7 A1LU6 sing 21 n y 
C7 C10 A1LU6 sing 22 n y 
C7 C6 A1LU6 doub 23 n y 
C10 N A1LU6 sing 24 n n 
C10 N1 A1LU6 doub 25 n y 
N1 N2 A1LU6 sing 26 n y 
N2 C6 A1LU6 sing 27 n y 
C6 C5 A1LU6 sing 28 n y 
C16 H13 A1LU6 sing 29 n n 
C15 H12 A1LU6 sing 30 n n 
C14 H11 A1LU6 sing 31 n n 
C18 H14 A1LU6 sing 32 n n 
C12 H10 A1LU6 sing 33 n n 
C12 H9 A1LU6 sing 34 n n 
C11 H8 A1LU6 sing 35 n n 
C2 H1 A1LU6 sing 36 n n 
C1 H A1LU6 sing 37 n n 
C9 H4 A1LU6 sing 38 n n 
C8 H3 A1LU6 sing 39 n n 
N H5 A1LU6 sing 40 n n 
N H6 A1LU6 sing 41 n n 
N2 H7 A1LU6 sing 42 n n 
C5 H2 A1LU6 sing 43 n n 
#
_atom_sites.entry_id                     8XFM 
_atom_sites.fract_transf_matrix[1][1]    0.009628 
_atom_sites.fract_transf_matrix[1][2]    0.005559 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011118 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013644 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A1LU6 A 1 401 1 A1LU6 1 . 
C 3 EDO A 1 402 1 EDO EDO . 
D 4 ZN A 1 403 1 ZN ZN . 
E 5 HOH A 1 501 43 HOH HOH . 
E 5 HOH A 2 502 52 HOH HOH . 
E 5 HOH A 3 503 39 HOH HOH . 
E 5 HOH A 4 504 69 HOH HOH . 
E 5 HOH A 5 505 14 HOH HOH . 
E 5 HOH A 6 506 75 HOH HOH . 
E 5 HOH A 7 507 1 HOH HOH . 
E 5 HOH A 8 508 7 HOH HOH . 
E 5 HOH A 9 509 36 HOH HOH . 
E 5 HOH A 10 510 25 HOH HOH . 
E 5 HOH A 11 511 4 HOH HOH . 
E 5 HOH A 12 512 28 HOH HOH . 
E 5 HOH A 13 513 3 HOH HOH . 
E 5 HOH A 14 514 51 HOH HOH . 
E 5 HOH A 15 515 6 HOH HOH . 
E 5 HOH A 16 516 33 HOH HOH . 
E 5 HOH A 17 517 60 HOH HOH . 
E 5 HOH A 18 518 72 HOH HOH . 
E 5 HOH A 19 519 16 HOH HOH . 
E 5 HOH A 20 520 34 HOH HOH . 
E 5 HOH A 21 521 5 HOH HOH . 
E 5 HOH A 22 522 67 HOH HOH . 
E 5 HOH A 23 523 35 HOH HOH . 
E 5 HOH A 24 524 70 HOH HOH . 
E 5 HOH A 25 525 10 HOH HOH . 
E 5 HOH A 26 526 8 HOH HOH . 
E 5 HOH A 27 527 2 HOH HOH . 
E 5 HOH A 28 528 31 HOH HOH . 
E 5 HOH A 29 529 64 HOH HOH . 
E 5 HOH A 30 530 12 HOH HOH . 
E 5 HOH A 31 531 9 HOH HOH . 
E 5 HOH A 32 532 66 HOH HOH . 
E 5 HOH A 33 533 68 HOH HOH . 
E 5 HOH A 34 534 11 HOH HOH . 
E 5 HOH A 35 535 42 HOH HOH . 
E 5 HOH A 36 536 65 HOH HOH . 
E 5 HOH A 37 537 30 HOH HOH . 
E 5 HOH A 38 538 58 HOH HOH . 
E 5 HOH A 39 539 63 HOH HOH . 
E 5 HOH A 40 540 27 HOH HOH . 
E 5 HOH A 41 541 24 HOH HOH . 
E 5 HOH A 42 542 18 HOH HOH . 
E 5 HOH A 43 543 73 HOH HOH . 
E 5 HOH A 44 544 23 HOH HOH . 
E 5 HOH A 45 545 22 HOH HOH . 
E 5 HOH A 46 546 46 HOH HOH . 
E 5 HOH A 47 547 37 HOH HOH . 
E 5 HOH A 48 548 59 HOH HOH . 
E 5 HOH A 49 549 71 HOH HOH . 
E 5 HOH A 50 550 57 HOH HOH . 
E 5 HOH A 51 551 50 HOH HOH . 
E 5 HOH A 52 552 53 HOH HOH . 
E 5 HOH A 53 553 29 HOH HOH . 
E 5 HOH A 54 554 74 HOH HOH . 
E 5 HOH A 55 555 54 HOH HOH . 
E 5 HOH A 56 556 13 HOH HOH . 
E 5 HOH A 57 557 56 HOH HOH . 
E 5 HOH A 58 558 45 HOH HOH . 
E 5 HOH A 59 559 17 HOH HOH . 
E 5 HOH A 60 560 26 HOH HOH . 
E 5 HOH A 61 561 21 HOH HOH . 
E 5 HOH A 62 562 62 HOH HOH . 
E 5 HOH A 63 563 40 HOH HOH . 
E 5 HOH A 64 564 19 HOH HOH . 
E 5 HOH A 65 565 55 HOH HOH . 
E 5 HOH A 66 566 32 HOH HOH . 
E 5 HOH A 67 567 15 HOH HOH . 
E 5 HOH A 68 568 38 HOH HOH . 
E 5 HOH A 69 569 76 HOH HOH . 
E 5 HOH A 70 570 61 HOH HOH . 
E 5 HOH A 71 571 49 HOH HOH . 
E 5 HOH A 72 572 48 HOH HOH . 
E 5 HOH A 73 573 20 HOH HOH . 
E 5 HOH A 74 574 47 HOH HOH . 
E 5 HOH A 75 575 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CL CL A1LU6 . . . B 2 38.21 38.396 16.715 1 77.22 0 CL A1LU6 401 A 1 
HETATM 2 C C17 A1LU6 . . . B 2 38.401 39.551 15.377 1 54.65 0 C17 A1LU6 401 A 1 
HETATM 3 C C16 A1LU6 . . . B 2 37.332 40.37 15.083 1 52.11 0 C16 A1LU6 401 A 1 
HETATM 4 C C15 A1LU6 . . . B 2 37.438 41.271 14.038 1 51.08 0 C15 A1LU6 401 A 1 
HETATM 5 C C14 A1LU6 . . . B 2 38.616 41.345 13.308 1 48.95 0 C14 A1LU6 401 A 1 
HETATM 6 C C18 A1LU6 . . . B 2 39.582 39.605 14.642 1 50.65 0 C18 A1LU6 401 A 1 
HETATM 7 C C13 A1LU6 . . . B 2 39.685 40.512 13.598 1 45.48 0 C13 A1LU6 401 A 1 
HETATM 8 C C12 A1LU6 . . . B 2 40.947 40.623 12.778 1 42.82 0 C12 A1LU6 401 A 1 
HETATM 9 N N3 A1LU6 . . . B 2 41.304 39.327 12.217 1 41.89 0 N3 A1LU6 401 A 1 
HETATM 10 C C A1LU6 . . . B 2 40.62 38.849 11.077 1 40.12 0 C A1LU6 401 A 1 
HETATM 11 O O A1LU6 . . . B 2 39.714 39.514 10.521 1 36.98 0 O A1LU6 401 A 1 
HETATM 12 C C11 A1LU6 . . . B 2 42.273 38.613 12.796 1 39.57 0 C11 A1LU6 401 A 1 
HETATM 13 C C3 A1LU6 . . . B 2 42.627 37.364 12.321 1 39.85 0 C3 A1LU6 401 A 1 
HETATM 14 C C2 A1LU6 . . . B 2 41.987 36.877 11.179 1 39.69 0 C2 A1LU6 401 A 1 
HETATM 15 C C1 A1LU6 . . . B 2 40.97 37.611 10.58 1 38.78 0 C1 A1LU6 401 A 1 
HETATM 16 C C4 A1LU6 . . . B 2 43.739 36.614 12.964 1 40.5 0 C4 A1LU6 401 A 1 
HETATM 17 C C9 A1LU6 . . . B 2 44.212 36.943 14.231 1 40.08 0 C9 A1LU6 401 A 1 
HETATM 18 C C8 A1LU6 . . . B 2 45.275 36.243 14.799 1 40.87 0 C8 A1LU6 401 A 1 
HETATM 19 C C7 A1LU6 . . . B 2 45.867 35.243 14.073 1 39.27 0 C7 A1LU6 401 A 1 
HETATM 20 C C10 A1LU6 . . . B 2 46.984 34.325 14.266 1 41.66 0 C10 A1LU6 401 A 1 
HETATM 21 N N A1LU6 . . . B 2 47.715 34.282 15.388 1 46.11 0 N A1LU6 401 A 1 
HETATM 22 N N1 A1LU6 . . . B 2 47.198 33.514 13.22 1 41.01 0 N1 A1LU6 401 A 1 
HETATM 23 N N2 A1LU6 . . . B 2 46.199 33.891 12.307 1 41.1 0 N2 A1LU6 401 A 1 
HETATM 24 C C6 A1LU6 . . . B 2 45.412 34.896 12.74 1 39.74 0 C6 A1LU6 401 A 1 
HETATM 25 C C5 A1LU6 . . . B 2 44.355 35.601 12.225 1 41.02 0 C5 A1LU6 401 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           25 
#