data_8XGG
#
_model_server_result.job_id            IQmOle4nU9DzclrlqUkRLQ 
_model_server_result.datetime_utc      '2024-11-07 06:29:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xgg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"VA","auth_seq_id":406}' 
#
_entry.id    8XGG 
#
_exptl.entry_id    8XGG 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              102.175 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HEXAN-1-OL 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8XGG 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8XGG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 R N N 
? 3 X N N 
? 3 DA N N 
? 3 JA N N 
? 3 PA N N 
? 3 VA N N 
? 3 BB N N 
? 3 HB N N 
? 3 NB N N 
? 3 TB N N 
? 3 ZB N N 
? 3 FC N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 55 A CYS 55 1_555 A SG CYS 242 A CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 62 A CYS 62 1_555 A SG CYS 236 A CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 66 A CYS 66 1_555 A SG CYS 231 A CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 B SG CYS 55 C CYS 55 1_555 B SG CYS 242 C CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 B SG CYS 62 C CYS 62 1_555 B SG CYS 236 C CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 B SG CYS 66 C CYS 66 1_555 B SG CYS 231 C CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf7 C SG CYS 55 B CYS 55 1_555 C SG CYS 242 B CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 C SG CYS 62 B CYS 62 1_555 C SG CYS 236 B CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 C SG CYS 66 B CYS 66 1_555 C SG CYS 231 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf10 D SG CYS 55 D CYS 55 1_555 D SG CYS 242 D CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 D SG CYS 62 D CYS 62 1_555 D SG CYS 236 D CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 D SG CYS 66 D CYS 66 1_555 D SG CYS 231 D CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf13 E SG CYS 55 E CYS 55 1_555 E SG CYS 242 E CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf14 E SG CYS 62 E CYS 62 1_555 E SG CYS 236 E CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf15 E SG CYS 66 E CYS 66 1_555 E SG CYS 231 E CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf16 F SG CYS 55 F CYS 55 1_555 F SG CYS 242 F CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf17 F SG CYS 62 F CYS 62 1_555 F SG CYS 236 F CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf18 F SG CYS 66 F CYS 66 1_555 F SG CYS 231 F CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf19 G SG CYS 55 G CYS 55 1_555 G SG CYS 242 G CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf20 G SG CYS 62 G CYS 62 1_555 G SG CYS 236 G CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf21 G SG CYS 66 G CYS 66 1_555 G SG CYS 231 G CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf22 H SG CYS 55 H CYS 55 1_555 H SG CYS 242 H CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf23 H SG CYS 62 H CYS 62 1_555 H SG CYS 236 H CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf24 H SG CYS 66 H CYS 66 1_555 H SG CYS 231 H CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf25 I SG CYS 55 I CYS 55 1_555 I SG CYS 242 I CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf26 I SG CYS 62 I CYS 62 1_555 I SG CYS 236 I CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf27 I SG CYS 66 I CYS 66 1_555 I SG CYS 231 I CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf28 J SG CYS 55 J CYS 55 1_555 J SG CYS 242 J CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf29 J SG CYS 62 J CYS 62 1_555 J SG CYS 236 J CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf30 J SG CYS 66 J CYS 66 1_555 J SG CYS 231 J CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf31 K SG CYS 55 K CYS 55 1_555 K SG CYS 242 K CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf32 K SG CYS 62 K CYS 62 1_555 K SG CYS 236 K CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf33 K SG CYS 66 K CYS 66 1_555 K SG CYS 231 K CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf34 L SG CYS 55 L CYS 55 1_555 L SG CYS 242 L CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf35 L SG CYS 62 L CYS 62 1_555 L SG CYS 236 L CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf36 L SG CYS 66 L CYS 66 1_555 L SG CYS 231 L CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C6 H14 O' 
_chem_comp.formula_weight    102.175 
_chem_comp.id                HE2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HEXAN-1-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CAC HE2 sing 129 n n 
CAA HAA1 HE2 sing 130 n n 
CAA HAA2 HE2 sing 131 n n 
CAA HAA3 HE2 sing 132 n n 
CAC CAE HE2 sing 133 n n 
CAC HAC1 HE2 sing 134 n n 
CAC HAC2 HE2 sing 135 n n 
CAE CAG HE2 sing 136 n n 
CAE HAE1 HE2 sing 137 n n 
CAE HAE2 HE2 sing 138 n n 
CAG CAF HE2 sing 139 n n 
CAG HAG1 HE2 sing 140 n n 
CAG HAG2 HE2 sing 141 n n 
CAF CAD HE2 sing 142 n n 
CAF HAF1 HE2 sing 143 n n 
CAF HAF2 HE2 sing 144 n n 
CAD OAB HE2 sing 145 n n 
CAD HAD1 HE2 sing 146 n n 
CAD HAD2 HE2 sing 147 n n 
OAB HAB HE2 sing 148 n n 
#
_atom_sites.entry_id                     8XGG 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 MC3 A 1 401 401 MC3 MC3 . 
N 2 MC3 A 1 402 402 MC3 MC3 . 
O 2 MC3 A 1 403 403 MC3 MC3 . 
P 2 MC3 A 1 404 404 MC3 MC3 . 
Q 2 MC3 A 1 405 405 MC3 MC3 . 
R 3 HE2 A 1 406 501 HE2 HE2 . 
S 2 MC3 C 1 401 401 MC3 MC3 . 
T 2 MC3 C 1 402 402 MC3 MC3 . 
U 2 MC3 C 1 403 403 MC3 MC3 . 
V 2 MC3 C 1 404 404 MC3 MC3 . 
W 2 MC3 C 1 405 405 MC3 MC3 . 
X 3 HE2 C 1 406 501 HE2 HE2 . 
Y 2 MC3 B 1 401 401 MC3 MC3 . 
Z 2 MC3 B 1 402 402 MC3 MC3 . 
AA 2 MC3 B 1 403 403 MC3 MC3 . 
BA 2 MC3 B 1 404 404 MC3 MC3 . 
CA 2 MC3 B 1 405 405 MC3 MC3 . 
DA 3 HE2 B 1 406 501 HE2 HE2 . 
EA 2 MC3 D 1 401 401 MC3 MC3 . 
FA 2 MC3 D 1 402 402 MC3 MC3 . 
GA 2 MC3 D 1 403 403 MC3 MC3 . 
HA 2 MC3 D 1 404 404 MC3 MC3 . 
IA 2 MC3 D 1 405 405 MC3 MC3 . 
JA 3 HE2 D 1 406 501 HE2 HE2 . 
KA 2 MC3 E 1 401 401 MC3 MC3 . 
LA 2 MC3 E 1 402 402 MC3 MC3 . 
MA 2 MC3 E 1 403 403 MC3 MC3 . 
NA 2 MC3 E 1 404 404 MC3 MC3 . 
OA 2 MC3 E 1 405 405 MC3 MC3 . 
PA 3 HE2 E 1 406 501 HE2 HE2 . 
QA 2 MC3 F 1 401 401 MC3 MC3 . 
RA 2 MC3 F 1 402 402 MC3 MC3 . 
SA 2 MC3 F 1 403 403 MC3 MC3 . 
TA 2 MC3 F 1 404 404 MC3 MC3 . 
UA 2 MC3 F 1 405 405 MC3 MC3 . 
VA 3 HE2 F 1 406 501 HE2 HE2 . 
WA 2 MC3 G 1 401 401 MC3 MC3 . 
XA 2 MC3 G 1 402 402 MC3 MC3 . 
YA 2 MC3 G 1 403 403 MC3 MC3 . 
ZA 2 MC3 G 1 404 404 MC3 MC3 . 
AB 2 MC3 G 1 405 405 MC3 MC3 . 
BB 3 HE2 G 1 406 501 HE2 HE2 . 
CB 2 MC3 H 1 401 401 MC3 MC3 . 
DB 2 MC3 H 1 402 402 MC3 MC3 . 
EB 2 MC3 H 1 403 403 MC3 MC3 . 
FB 2 MC3 H 1 404 404 MC3 MC3 . 
GB 2 MC3 H 1 405 405 MC3 MC3 . 
HB 3 HE2 H 1 406 501 HE2 HE2 . 
IB 2 MC3 I 1 401 401 MC3 MC3 . 
JB 2 MC3 I 1 402 402 MC3 MC3 . 
KB 2 MC3 I 1 403 403 MC3 MC3 . 
LB 2 MC3 I 1 404 404 MC3 MC3 . 
MB 2 MC3 I 1 405 405 MC3 MC3 . 
NB 3 HE2 I 1 406 501 HE2 HE2 . 
OB 2 MC3 J 1 401 401 MC3 MC3 . 
PB 2 MC3 J 1 402 402 MC3 MC3 . 
QB 2 MC3 J 1 403 403 MC3 MC3 . 
RB 2 MC3 J 1 404 404 MC3 MC3 . 
SB 2 MC3 J 1 405 405 MC3 MC3 . 
TB 3 HE2 J 1 406 501 HE2 HE2 . 
UB 2 MC3 K 1 401 401 MC3 MC3 . 
VB 2 MC3 K 1 402 402 MC3 MC3 . 
WB 2 MC3 K 1 403 403 MC3 MC3 . 
XB 2 MC3 K 1 404 404 MC3 MC3 . 
YB 2 MC3 K 1 405 405 MC3 MC3 . 
ZB 3 HE2 K 1 406 501 HE2 HE2 . 
AC 2 MC3 L 1 401 401 MC3 MC3 . 
BC 2 MC3 L 1 402 402 MC3 MC3 . 
CC 2 MC3 L 1 403 403 MC3 MC3 . 
DC 2 MC3 L 1 404 404 MC3 MC3 . 
EC 2 MC3 L 1 405 405 MC3 MC3 . 
FC 3 HE2 L 1 406 501 HE2 HE2 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA HE2 . B . VA 3 122.402 128.18 93.997 0.84 60.98 ? CAA HE2 406 F 1 
HETATM 2 C CAC HE2 . B . VA 3 121.531 127.178 93.254 0.84 63.83 ? CAC HE2 406 F 1 
HETATM 3 C CAE HE2 . B . VA 3 122.027 126.901 91.84 0.84 62.7 ? CAE HE2 406 F 1 
HETATM 4 C CAG HE2 . B . VA 3 121.233 125.812 91.131 0.84 62.09 ? CAG HE2 406 F 1 
HETATM 5 C CAF HE2 . B . VA 3 121.653 125.611 89.68 0.84 61.92 ? CAF HE2 406 F 1 
HETATM 6 C CAD HE2 . B . VA 3 120.843 124.523 89.002 0.84 59.5 ? CAD HE2 406 F 1 
HETATM 7 O OAB HE2 . B . VA 3 121.162 124.491 87.627 0.84 60.34 ? OAB HE2 406 F 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           214 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#