data_8XGT # _model_server_result.job_id MmIRYZIHBTQfoW-lwUJ2iw _model_server_result.datetime_utc '2024-12-18 06:51:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xgt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":401}' # _entry.id 8XGT # _exptl.entry_id 8XGT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XGT _cell.length_a 83.962 _cell.length_b 217.386 _cell.length_c 242.375 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XGT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,KA,LA 1 1 L,IA,JA 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1/2,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 -41.981 0 121.1875 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 O N N ? 2 Q N N ? 2 S N N ? 2 U N N ? 2 W N N ? 2 Y N N ? 2 AA N N ? 2 CA N N ? 2 EA N N ? 2 GA N N ? 2 IA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 127 B ASP 159 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? metalc ? metalc2 A OE1 GLU 170 B GLU 202 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc3 A OE2 GLU 170 B GLU 202 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc4 A NE2 HIS 298 B HIS 330 1_555 M ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc5 M ZN ZN . B ZN 401 1_555 N N19 A1D48 . B A1D48 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc6 B OD1 ASP 127 A ASP 159 1_555 O ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc7 B OD2 ASP 127 A ASP 159 1_555 O ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? metalc ? metalc8 B OE1 GLU 170 A GLU 202 1_555 O ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc9 B OE2 GLU 170 A GLU 202 1_555 O ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc10 B NE2 HIS 298 A HIS 330 1_555 O ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc11 O ZN ZN . A ZN 401 1_555 P N19 A1D48 . A A1D48 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc12 C OD2 ASP 127 C ASP 159 1_555 Q ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc13 C OE1 GLU 170 C GLU 202 1_555 Q ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc14 C OE2 GLU 170 C GLU 202 1_555 Q ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc15 C NE2 HIS 298 C HIS 330 1_555 Q ZN ZN . C ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc16 Q ZN ZN . C ZN 401 1_555 R N19 A1D48 . C A1D48 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc17 D OD1 ASP 127 D ASP 159 1_555 S ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc18 D OE1 GLU 170 D GLU 202 1_555 S ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc19 D OE2 GLU 170 D GLU 202 1_555 S ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.754 ? metalc ? metalc20 D NE2 HIS 298 D HIS 330 1_555 S ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc21 S ZN ZN . D ZN 401 1_555 T N19 A1D48 . D A1D48 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? metalc ? metalc22 E OD2 ASP 127 E ASP 159 1_555 U ZN ZN . E ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc23 E OE1 GLU 170 E GLU 202 1_555 U ZN ZN . E ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc24 E OE2 GLU 170 E GLU 202 1_555 U ZN ZN . E ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc25 E NE2 HIS 298 E HIS 330 1_555 U ZN ZN . E ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc26 U ZN ZN . E ZN 401 1_555 V N19 A1D48 . E A1D48 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc27 F OD2 ASP 127 F ASP 159 1_555 W ZN ZN . F ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc28 F OE1 GLU 170 F GLU 202 1_555 W ZN ZN . F ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc29 F OE2 GLU 170 F GLU 202 1_555 W ZN ZN . F ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc30 F NE2 HIS 298 F HIS 330 1_555 W ZN ZN . F ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc31 W ZN ZN . F ZN 401 1_555 X N19 A1D48 . F A1D48 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc32 G OD2 ASP 127 G ASP 159 1_555 Y ZN ZN . G ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.707 ? metalc ? metalc33 G OE1 GLU 170 G GLU 202 1_555 Y ZN ZN . G ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc34 G OE2 GLU 170 G GLU 202 1_555 Y ZN ZN . G ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.727 ? metalc ? metalc35 G NE2 HIS 298 G HIS 330 1_555 Y ZN ZN . G ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc36 Y ZN ZN . G ZN 401 1_555 Z N19 A1D48 . G A1D48 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc37 H OD2 ASP 127 H ASP 159 1_555 AA ZN ZN . H ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc38 H OE2 GLU 170 H GLU 202 1_555 AA ZN ZN . H ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.705 ? metalc ? metalc39 H NE2 HIS 298 H HIS 330 1_555 AA ZN ZN . H ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc40 AA ZN ZN . H ZN 401 1_555 BA N19 A1D48 . H A1D48 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc41 I OD2 ASP 127 I ASP 159 1_555 CA ZN ZN . I ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc42 I NE2 HIS 298 I HIS 330 1_555 CA ZN ZN . I ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.778 ? metalc ? metalc43 CA ZN ZN . I ZN 401 1_555 DA N19 A1D48 . I A1D48 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc44 J OD2 ASP 127 J ASP 159 1_555 EA ZN ZN . J ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? metalc ? metalc45 J OE1 GLU 170 J GLU 202 1_555 EA ZN ZN . J ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc46 J OE2 GLU 170 J GLU 202 1_555 EA ZN ZN . J ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc47 J NE2 HIS 298 J HIS 330 1_555 EA ZN ZN . J ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc48 EA ZN ZN . J ZN 401 1_555 FA N19 A1D48 . J A1D48 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc49 K OD2 ASP 127 K ASP 159 1_555 GA ZN ZN . K ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc50 K OE1 GLU 170 K GLU 202 1_555 GA ZN ZN . K ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc51 K OE2 GLU 170 K GLU 202 1_555 GA ZN ZN . K ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc52 K NE2 HIS 298 K HIS 330 1_555 GA ZN ZN . K ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? metalc ? metalc53 GA ZN ZN . K ZN 401 1_555 HA N19 A1D48 . K A1D48 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc54 L OD2 ASP 127 L ASP 159 1_555 IA ZN ZN . L ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc55 L OE1 GLU 170 L GLU 202 1_555 IA ZN ZN . L ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc56 L OE2 GLU 170 L GLU 202 1_555 IA ZN ZN . L ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? metalc ? metalc57 L NE2 HIS 298 L HIS 330 1_555 IA ZN ZN . L ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc58 IA ZN ZN . L ZN 401 1_555 JA N19 A1D48 . L A1D48 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8XGT _atom_sites.fract_transf_matrix[1][1] 0.01191 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0046 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 ZN B 1 401 13 ZN ZN . N 3 A1D48 B 1 402 1 A1D48 LIG . O 2 ZN A 1 401 14 ZN ZN . P 3 A1D48 A 1 402 2 A1D48 LIG . Q 2 ZN C 1 401 3 ZN ZN . R 3 A1D48 C 1 402 3 A1D48 LIG . S 2 ZN D 1 401 4 ZN ZN . T 3 A1D48 D 1 402 4 A1D48 LIG . U 2 ZN E 1 401 5 ZN ZN . V 3 A1D48 E 1 402 5 A1D48 LIG . W 2 ZN F 1 401 6 ZN ZN . X 3 A1D48 F 1 402 6 A1D48 LIG . Y 2 ZN G 1 401 7 ZN ZN . Z 3 A1D48 G 1 402 7 A1D48 LIG . AA 2 ZN H 1 401 8 ZN ZN . BA 3 A1D48 H 1 402 8 A1D48 LIG . CA 2 ZN I 1 401 9 ZN ZN . DA 3 A1D48 I 1 402 9 A1D48 LIG . EA 2 ZN J 1 401 10 ZN ZN . FA 3 A1D48 J 1 402 10 A1D48 LIG . GA 2 ZN K 1 401 11 ZN ZN . HA 3 A1D48 K 1 402 11 A1D48 LIG . IA 2 ZN L 1 401 12 ZN ZN . JA 3 A1D48 L 1 402 12 A1D48 LIG . KA 4 HOH C 1 501 14 HOH HOH . KA 4 HOH C 2 502 10 HOH HOH . LA 4 HOH J 1 501 25 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 2 _atom_site.Cartn_x -2.588 _atom_site.Cartn_y -49.263 _atom_site.Cartn_z -25.849 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #