data_8XH1 # _model_server_result.job_id 7PU8cn83-Y9stmJMAP6psQ _model_server_result.datetime_utc '2024-10-15 03:25:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xh1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8XH1 # _exptl.entry_id 8XH1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XH1 _cell.length_a 51.244 _cell.length_b 52.28 _cell.length_c 195.295 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XH1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 65 A LEU 64 1_555 A N1 CRF 66 A CRF 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale2 A C3 CRF 66 A CRF 65 1_555 A N MET 67 A MET 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale3 B C LEU 65 B LEU 64 1_555 B N1 CRF 66 B CRF 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? covale ? covale4 B C3 CRF 66 B CRF 65 1_555 B N MET 67 B MET 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 174 n n C1 C2 GOL sing 175 n n C1 H11 GOL sing 176 n n C1 H12 GOL sing 177 n n O1 HO1 GOL sing 178 n n C2 O2 GOL sing 179 n n C2 C3 GOL sing 180 n n C2 H2 GOL sing 181 n n O2 HO2 GOL sing 182 n n C3 O3 GOL sing 183 n n C3 H31 GOL sing 184 n n C3 H32 GOL sing 185 n n O3 HO3 GOL sing 186 n n # _atom_sites.entry_id 8XH1 _atom_sites.fract_transf_matrix[1][1] 0.019514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019128 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 301 301 GOL GOL . D 2 GOL A 1 302 302 GOL GOL . E 3 HOH A 1 401 72 HOH HOH . E 3 HOH A 2 402 24 HOH HOH . E 3 HOH A 3 403 165 HOH HOH . E 3 HOH A 4 404 202 HOH HOH . E 3 HOH A 5 405 161 HOH HOH . E 3 HOH A 6 406 209 HOH HOH . E 3 HOH A 7 407 152 HOH HOH . E 3 HOH A 8 408 4 HOH HOH . E 3 HOH A 9 409 164 HOH HOH . E 3 HOH A 10 410 166 HOH HOH . E 3 HOH A 11 411 41 HOH HOH . E 3 HOH A 12 412 203 HOH HOH . E 3 HOH A 13 413 18 HOH HOH . E 3 HOH A 14 414 15 HOH HOH . E 3 HOH A 15 415 114 HOH HOH . E 3 HOH A 16 416 178 HOH HOH . E 3 HOH A 17 417 37 HOH HOH . E 3 HOH A 18 418 89 HOH HOH . E 3 HOH A 19 419 155 HOH HOH . E 3 HOH A 20 420 140 HOH HOH . E 3 HOH A 21 421 76 HOH HOH . E 3 HOH A 22 422 179 HOH HOH . E 3 HOH A 23 423 17 HOH HOH . E 3 HOH A 24 424 221 HOH HOH . E 3 HOH A 25 425 36 HOH HOH . E 3 HOH A 26 426 79 HOH HOH . E 3 HOH A 27 427 158 HOH HOH . E 3 HOH A 28 428 51 HOH HOH . E 3 HOH A 29 429 160 HOH HOH . E 3 HOH A 30 430 118 HOH HOH . E 3 HOH A 31 431 26 HOH HOH . E 3 HOH A 32 432 187 HOH HOH . E 3 HOH A 33 433 50 HOH HOH . E 3 HOH A 34 434 91 HOH HOH . E 3 HOH A 35 435 131 HOH HOH . E 3 HOH A 36 436 93 HOH HOH . E 3 HOH A 37 437 62 HOH HOH . E 3 HOH A 38 438 182 HOH HOH . E 3 HOH A 39 439 48 HOH HOH . E 3 HOH A 40 440 19 HOH HOH . E 3 HOH A 41 441 77 HOH HOH . E 3 HOH A 42 442 123 HOH HOH . E 3 HOH A 43 443 207 HOH HOH . E 3 HOH A 44 444 12 HOH HOH . E 3 HOH A 45 445 1 HOH HOH . E 3 HOH A 46 446 8 HOH HOH . E 3 HOH A 47 447 57 HOH HOH . E 3 HOH A 48 448 129 HOH HOH . E 3 HOH A 49 449 143 HOH HOH . E 3 HOH A 50 450 58 HOH HOH . E 3 HOH A 51 451 154 HOH HOH . E 3 HOH A 52 452 125 HOH HOH . E 3 HOH A 53 453 69 HOH HOH . E 3 HOH A 54 454 133 HOH HOH . E 3 HOH A 55 455 153 HOH HOH . E 3 HOH A 56 456 134 HOH HOH . E 3 HOH A 57 457 83 HOH HOH . E 3 HOH A 58 458 94 HOH HOH . E 3 HOH A 59 459 122 HOH HOH . E 3 HOH A 60 460 23 HOH HOH . E 3 HOH A 61 461 198 HOH HOH . E 3 HOH A 62 462 9 HOH HOH . E 3 HOH A 63 463 124 HOH HOH . E 3 HOH A 64 464 25 HOH HOH . E 3 HOH A 65 465 99 HOH HOH . E 3 HOH A 66 466 2 HOH HOH . E 3 HOH A 67 467 43 HOH HOH . E 3 HOH A 68 468 59 HOH HOH . E 3 HOH A 69 469 110 HOH HOH . E 3 HOH A 70 470 22 HOH HOH . E 3 HOH A 71 471 193 HOH HOH . E 3 HOH A 72 472 224 HOH HOH . E 3 HOH A 73 473 30 HOH HOH . E 3 HOH A 74 474 105 HOH HOH . E 3 HOH A 75 475 11 HOH HOH . E 3 HOH A 76 476 173 HOH HOH . E 3 HOH A 77 477 45 HOH HOH . E 3 HOH A 78 478 101 HOH HOH . E 3 HOH A 79 479 116 HOH HOH . E 3 HOH A 80 480 84 HOH HOH . E 3 HOH A 81 481 184 HOH HOH . E 3 HOH A 82 482 82 HOH HOH . E 3 HOH A 83 483 102 HOH HOH . E 3 HOH A 84 484 66 HOH HOH . E 3 HOH A 85 485 71 HOH HOH . E 3 HOH A 86 486 188 HOH HOH . E 3 HOH A 87 487 218 HOH HOH . E 3 HOH A 88 488 208 HOH HOH . E 3 HOH A 89 489 68 HOH HOH . E 3 HOH A 90 490 80 HOH HOH . E 3 HOH A 91 491 177 HOH HOH . E 3 HOH A 92 492 60 HOH HOH . E 3 HOH A 93 493 171 HOH HOH . E 3 HOH A 94 494 108 HOH HOH . E 3 HOH A 95 495 130 HOH HOH . E 3 HOH A 96 496 150 HOH HOH . E 3 HOH A 97 497 53 HOH HOH . E 3 HOH A 98 498 49 HOH HOH . E 3 HOH A 99 499 176 HOH HOH . E 3 HOH A 100 500 33 HOH HOH . E 3 HOH A 101 501 212 HOH HOH . E 3 HOH A 102 502 63 HOH HOH . E 3 HOH A 103 503 141 HOH HOH . E 3 HOH A 104 504 54 HOH HOH . E 3 HOH A 105 505 35 HOH HOH . E 3 HOH A 106 506 192 HOH HOH . E 3 HOH A 107 507 113 HOH HOH . E 3 HOH A 108 508 44 HOH HOH . E 3 HOH A 109 509 225 HOH HOH . E 3 HOH A 110 510 121 HOH HOH . E 3 HOH A 111 511 139 HOH HOH . E 3 HOH A 112 512 138 HOH HOH . E 3 HOH A 113 513 132 HOH HOH . E 3 HOH A 114 514 96 HOH HOH . E 3 HOH A 115 515 200 HOH HOH . E 3 HOH A 116 516 34 HOH HOH . E 3 HOH A 117 517 65 HOH HOH . E 3 HOH A 118 518 119 HOH HOH . E 3 HOH A 119 519 136 HOH HOH . E 3 HOH A 120 520 213 HOH HOH . E 3 HOH A 121 521 174 HOH HOH . E 3 HOH A 122 522 204 HOH HOH . E 3 HOH A 123 523 98 HOH HOH . E 3 HOH A 124 524 109 HOH HOH . E 3 HOH A 125 525 183 HOH HOH . E 3 HOH A 126 526 156 HOH HOH . E 3 HOH A 127 527 216 HOH HOH . E 3 HOH A 128 528 189 HOH HOH . E 3 HOH A 129 529 190 HOH HOH . E 3 HOH A 130 530 181 HOH HOH . E 3 HOH A 131 531 229 HOH HOH . E 3 HOH A 132 532 220 HOH HOH . E 3 HOH A 133 533 167 HOH HOH . E 3 HOH A 134 534 191 HOH HOH . E 3 HOH A 135 535 195 HOH HOH . E 3 HOH A 136 536 185 HOH HOH . E 3 HOH A 137 537 127 HOH HOH . E 3 HOH A 138 538 106 HOH HOH . F 3 HOH B 1 301 137 HOH HOH . F 3 HOH B 2 302 88 HOH HOH . F 3 HOH B 3 303 32 HOH HOH . F 3 HOH B 4 304 92 HOH HOH . F 3 HOH B 5 305 151 HOH HOH . F 3 HOH B 6 306 42 HOH HOH . F 3 HOH B 7 307 104 HOH HOH . F 3 HOH B 8 308 52 HOH HOH . F 3 HOH B 9 309 7 HOH HOH . F 3 HOH B 10 310 211 HOH HOH . F 3 HOH B 11 311 115 HOH HOH . F 3 HOH B 12 312 142 HOH HOH . F 3 HOH B 13 313 3 HOH HOH . F 3 HOH B 14 314 145 HOH HOH . F 3 HOH B 15 315 126 HOH HOH . F 3 HOH B 16 316 70 HOH HOH . F 3 HOH B 17 317 10 HOH HOH . F 3 HOH B 18 318 230 HOH HOH . F 3 HOH B 19 319 75 HOH HOH . F 3 HOH B 20 320 86 HOH HOH . F 3 HOH B 21 321 217 HOH HOH . F 3 HOH B 22 322 81 HOH HOH . F 3 HOH B 23 323 73 HOH HOH . F 3 HOH B 24 324 38 HOH HOH . F 3 HOH B 25 325 21 HOH HOH . F 3 HOH B 26 326 112 HOH HOH . F 3 HOH B 27 327 40 HOH HOH . F 3 HOH B 28 328 227 HOH HOH . F 3 HOH B 29 329 87 HOH HOH . F 3 HOH B 30 330 16 HOH HOH . F 3 HOH B 31 331 201 HOH HOH . F 3 HOH B 32 332 14 HOH HOH . F 3 HOH B 33 333 135 HOH HOH . F 3 HOH B 34 334 74 HOH HOH . F 3 HOH B 35 335 95 HOH HOH . F 3 HOH B 36 336 159 HOH HOH . F 3 HOH B 37 337 223 HOH HOH . F 3 HOH B 38 338 46 HOH HOH . F 3 HOH B 39 339 31 HOH HOH . F 3 HOH B 40 340 170 HOH HOH . F 3 HOH B 41 341 5 HOH HOH . F 3 HOH B 42 342 28 HOH HOH . F 3 HOH B 43 343 13 HOH HOH . F 3 HOH B 44 344 144 HOH HOH . F 3 HOH B 45 345 85 HOH HOH . F 3 HOH B 46 346 6 HOH HOH . F 3 HOH B 47 347 64 HOH HOH . F 3 HOH B 48 348 78 HOH HOH . F 3 HOH B 49 349 107 HOH HOH . F 3 HOH B 50 350 186 HOH HOH . F 3 HOH B 51 351 29 HOH HOH . F 3 HOH B 52 352 39 HOH HOH . F 3 HOH B 53 353 168 HOH HOH . F 3 HOH B 54 354 103 HOH HOH . F 3 HOH B 55 355 147 HOH HOH . F 3 HOH B 56 356 97 HOH HOH . F 3 HOH B 57 357 162 HOH HOH . F 3 HOH B 58 358 149 HOH HOH . F 3 HOH B 59 359 20 HOH HOH . F 3 HOH B 60 360 219 HOH HOH . F 3 HOH B 61 361 128 HOH HOH . F 3 HOH B 62 362 90 HOH HOH . F 3 HOH B 63 363 180 HOH HOH . F 3 HOH B 64 364 120 HOH HOH . F 3 HOH B 65 365 228 HOH HOH . F 3 HOH B 66 366 196 HOH HOH . F 3 HOH B 67 367 226 HOH HOH . F 3 HOH B 68 368 111 HOH HOH . F 3 HOH B 69 369 148 HOH HOH . F 3 HOH B 70 370 47 HOH HOH . F 3 HOH B 71 371 194 HOH HOH . F 3 HOH B 72 372 163 HOH HOH . F 3 HOH B 73 373 55 HOH HOH . F 3 HOH B 74 374 199 HOH HOH . F 3 HOH B 75 375 222 HOH HOH . F 3 HOH B 76 376 117 HOH HOH . F 3 HOH B 77 377 27 HOH HOH . F 3 HOH B 78 378 172 HOH HOH . F 3 HOH B 79 379 157 HOH HOH . F 3 HOH B 80 380 67 HOH HOH . F 3 HOH B 81 381 100 HOH HOH . F 3 HOH B 82 382 210 HOH HOH . F 3 HOH B 83 383 206 HOH HOH . F 3 HOH B 84 384 205 HOH HOH . F 3 HOH B 85 385 197 HOH HOH . F 3 HOH B 86 386 56 HOH HOH . F 3 HOH B 87 387 215 HOH HOH . F 3 HOH B 88 388 169 HOH HOH . F 3 HOH B 89 389 214 HOH HOH . F 3 HOH B 90 390 146 HOH HOH . F 3 HOH B 91 391 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 7.913 4.396 31.586 1 61.59 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . C 2 6.78 4.993 30.952 1 47.13 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . C 2 7.617 3.996 33.015 1 63.21 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . C 2 6.997 5.085 33.699 1 60.24 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . C 2 8.86 3.554 33.761 1 61.55 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . C 2 8.61 2.397 34.549 1 55.94 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 46 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 455 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #