data_8XJ6 # _model_server_result.job_id 9kr7bcRe7vXr2qXJa0RB0A _model_server_result.datetime_utc '2024-11-22 21:24:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xj6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":801}' # _entry.id 8XJ6 # _exptl.entry_id 8XJ6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XJ6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XJ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E SG CYS 282 E CYS 282 1_555 L ZN ZN . E ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc2 E SG CYS 285 E CYS 285 1_555 L ZN ZN . E ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc3 E ND1 HIS 290 E HIS 290 1_555 L ZN ZN . E ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc4 E SG CYS 314 E CYS 314 1_555 L ZN ZN . E ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc5 F SG CYS 282 F CYS 282 1_555 N ZN ZN . F ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc6 F SG CYS 285 F CYS 285 1_555 N ZN ZN . F ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc7 F SG CYS 314 F CYS 314 1_555 N ZN ZN . F ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 58 n n PG O2G ANP sing 59 n n PG O3G ANP sing 60 n n PG N3B ANP sing 61 n n O2G HOG2 ANP sing 62 n n O3G HOG3 ANP sing 63 n n PB O1B ANP doub 64 n n PB O2B ANP sing 65 n n PB N3B ANP sing 66 n n PB O3A ANP sing 67 n n O2B HOB2 ANP sing 68 n n N3B HNB1 ANP sing 69 n n PA O1A ANP doub 70 n n PA O2A ANP sing 71 n n PA O3A ANP sing 72 n n PA O5' ANP sing 73 n n O2A HOA2 ANP sing 74 n n O5' C5' ANP sing 75 n n C5' C4' ANP sing 76 n n C5' "H5'1" ANP sing 77 n n C5' "H5'2" ANP sing 78 n n C4' O4' ANP sing 79 n n C4' C3' ANP sing 80 n n C4' H4' ANP sing 81 n n O4' C1' ANP sing 82 n n C3' O3' ANP sing 83 n n C3' C2' ANP sing 84 n n C3' H3' ANP sing 85 n n O3' HO3' ANP sing 86 n n C2' O2' ANP sing 87 n n C2' C1' ANP sing 88 n n C2' H2' ANP sing 89 n n O2' HO2' ANP sing 90 n n C1' N9 ANP sing 91 n n C1' H1' ANP sing 92 n n N9 C8 ANP sing 93 n y N9 C4 ANP sing 94 n y C8 N7 ANP doub 95 n y C8 H8 ANP sing 96 n n N7 C5 ANP sing 97 n y C5 C6 ANP sing 98 n y C5 C4 ANP doub 99 n y C6 N6 ANP sing 100 n n C6 N1 ANP doub 101 n y N6 HN61 ANP sing 102 n n N6 HN62 ANP sing 103 n n N1 C2 ANP sing 104 n y C2 N3 ANP doub 105 n y C2 H2 ANP sing 106 n n N3 C4 ANP sing 107 n y # _atom_sites.entry_id 8XJ6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ANP A 1 801 801 ANP ANP . H 3 AN2 B 1 801 801 AN2 ANP . I 2 ANP C 1 801 801 ANP ANP . J 2 ANP D 1 801 801 ANP ANP . K 3 AN2 E 1 801 801 AN2 ANP . L 4 ZN E 1 802 1 ZN ZN . M 3 AN2 F 1 801 801 AN2 ANP . N 4 ZN F 1 802 2 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . G 2 170.087 161.139 196.139 1 197.95 ? PG ANP 801 A 1 HETATM 2 O O1G ANP . . . G 2 170.358 160.83 197.571 1 197.95 ? O1G ANP 801 A 1 HETATM 3 O O2G ANP . . . G 2 171.29 161.73 195.401 1 197.95 ? O2G ANP 801 A 1 HETATM 4 O O3G ANP . . . G 2 169.548 159.946 195.343 1 197.95 ? O3G ANP 801 A 1 HETATM 5 P PB ANP . . . G 2 168.53 163.645 196.654 1 197.95 ? PB ANP 801 A 1 HETATM 6 O O1B ANP . . . G 2 168.298 164.685 195.632 1 197.95 ? O1B ANP 801 A 1 HETATM 7 O O2B ANP . . . G 2 167.359 163.372 197.598 1 197.95 ? O2B ANP 801 A 1 HETATM 8 N N3B ANP . . . G 2 168.949 162.254 196.008 1 197.95 ? N3B ANP 801 A 1 HETATM 9 P PA ANP . . . G 2 171.338 164.282 197.325 1 197.95 ? PA ANP 801 A 1 HETATM 10 O O1A ANP . . . G 2 171.611 164.668 195.926 1 197.95 ? O1A ANP 801 A 1 HETATM 11 O O2A ANP . . . G 2 172.12 163.069 197.827 1 197.95 ? O2A ANP 801 A 1 HETATM 12 O O3A ANP . . . G 2 169.797 163.978 197.558 1 197.95 ? O3A ANP 801 A 1 HETATM 13 O O5' ANP . . . G 2 171.604 165.493 198.3 1 197.95 ? O5' ANP 801 A 1 HETATM 14 C C5' ANP . . . G 2 172.121 166.748 197.811 1 197.95 ? C5' ANP 801 A 1 HETATM 15 C C4' ANP . . . G 2 171.289 167.875 198.367 1 197.95 ? C4' ANP 801 A 1 HETATM 16 O O4' ANP . . . G 2 172.076 168.637 199.303 1 197.95 ? O4' ANP 801 A 1 HETATM 17 C C3' ANP . . . G 2 170.813 168.9 197.347 1 197.95 ? C3' ANP 801 A 1 HETATM 18 O O3' ANP . . . G 2 169.643 169.571 197.799 1 197.95 ? O3' ANP 801 A 1 HETATM 19 C C2' ANP . . . G 2 172.012 169.848 197.249 1 197.95 ? C2' ANP 801 A 1 HETATM 20 O O2' ANP . . . G 2 171.609 171.175 196.932 1 197.95 ? O2' ANP 801 A 1 HETATM 21 C C1' ANP . . . G 2 172.605 169.786 198.663 1 197.95 ? C1' ANP 801 A 1 HETATM 22 N N9 ANP . . . G 2 174.06 169.689 198.692 1 197.95 ? N9 ANP 801 A 1 HETATM 23 C C8 ANP . . . G 2 174.855 168.932 197.873 1 197.95 ? C8 ANP 801 A 1 HETATM 24 N N7 ANP . . . G 2 176.137 169.034 198.126 1 197.95 ? N7 ANP 801 A 1 HETATM 25 C C5 ANP . . . G 2 176.19 169.917 199.194 1 197.95 ? C5 ANP 801 A 1 HETATM 26 C C6 ANP . . . G 2 177.263 170.444 199.938 1 197.95 ? C6 ANP 801 A 1 HETATM 27 N N6 ANP . . . G 2 178.545 170.141 199.714 1 197.95 ? N6 ANP 801 A 1 HETATM 28 N N1 ANP . . . G 2 176.971 171.306 200.936 1 197.95 ? N1 ANP 801 A 1 HETATM 29 C C2 ANP . . . G 2 175.693 171.613 201.167 1 197.95 ? C2 ANP 801 A 1 HETATM 30 N N3 ANP . . . G 2 174.6 171.179 200.535 1 197.95 ? N3 ANP 801 A 1 HETATM 31 C C4 ANP . . . G 2 174.918 170.33 199.552 1 197.95 ? C4 ANP 801 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #