data_8XJ6 # _model_server_result.job_id qJS5MekpsfzLYlE4nPX5mA _model_server_result.datetime_utc '2024-11-22 21:33:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xj6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":801}' # _entry.id 8XJ6 # _exptl.entry_id 8XJ6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XJ6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XJ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E SG CYS 282 E CYS 282 1_555 L ZN ZN . E ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc2 E SG CYS 285 E CYS 285 1_555 L ZN ZN . E ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc3 E ND1 HIS 290 E HIS 290 1_555 L ZN ZN . E ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc4 E SG CYS 314 E CYS 314 1_555 L ZN ZN . E ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc5 F SG CYS 282 F CYS 282 1_555 N ZN ZN . F ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc6 F SG CYS 285 F CYS 285 1_555 N ZN ZN . F ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc7 F SG CYS 314 F CYS 314 1_555 N ZN ZN . F ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 58 n n PG O2G ANP sing 59 n n PG O3G ANP sing 60 n n PG N3B ANP sing 61 n n O2G HOG2 ANP sing 62 n n O3G HOG3 ANP sing 63 n n PB O1B ANP doub 64 n n PB O2B ANP sing 65 n n PB N3B ANP sing 66 n n PB O3A ANP sing 67 n n O2B HOB2 ANP sing 68 n n N3B HNB1 ANP sing 69 n n PA O1A ANP doub 70 n n PA O2A ANP sing 71 n n PA O3A ANP sing 72 n n PA O5' ANP sing 73 n n O2A HOA2 ANP sing 74 n n O5' C5' ANP sing 75 n n C5' C4' ANP sing 76 n n C5' "H5'1" ANP sing 77 n n C5' "H5'2" ANP sing 78 n n C4' O4' ANP sing 79 n n C4' C3' ANP sing 80 n n C4' H4' ANP sing 81 n n O4' C1' ANP sing 82 n n C3' O3' ANP sing 83 n n C3' C2' ANP sing 84 n n C3' H3' ANP sing 85 n n O3' HO3' ANP sing 86 n n C2' O2' ANP sing 87 n n C2' C1' ANP sing 88 n n C2' H2' ANP sing 89 n n O2' HO2' ANP sing 90 n n C1' N9 ANP sing 91 n n C1' H1' ANP sing 92 n n N9 C8 ANP sing 93 n y N9 C4 ANP sing 94 n y C8 N7 ANP doub 95 n y C8 H8 ANP sing 96 n n N7 C5 ANP sing 97 n y C5 C6 ANP sing 98 n y C5 C4 ANP doub 99 n y C6 N6 ANP sing 100 n n C6 N1 ANP doub 101 n y N6 HN61 ANP sing 102 n n N6 HN62 ANP sing 103 n n N1 C2 ANP sing 104 n y C2 N3 ANP doub 105 n y C2 H2 ANP sing 106 n n N3 C4 ANP sing 107 n y # _atom_sites.entry_id 8XJ6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ANP A 1 801 801 ANP ANP . H 3 AN2 B 1 801 801 AN2 ANP . I 2 ANP C 1 801 801 ANP ANP . J 2 ANP D 1 801 801 ANP ANP . K 3 AN2 E 1 801 801 AN2 ANP . L 4 ZN E 1 802 1 ZN ZN . M 3 AN2 F 1 801 801 AN2 ANP . N 4 ZN F 1 802 2 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . I 2 113.042 137.207 177.295 1 173.74 ? PG ANP 801 C 1 HETATM 2 O O1G ANP . . . I 2 114.202 137.524 176.414 1 173.74 ? O1G ANP 801 C 1 HETATM 3 O O2G ANP . . . I 2 112.649 135.727 177.29 1 173.74 ? O2G ANP 801 C 1 HETATM 4 O O3G ANP . . . I 2 113.231 137.67 178.741 1 173.74 ? O3G ANP 801 C 1 HETATM 5 P PB ANP . . . I 2 111.024 139.391 176.935 1 173.74 ? PB ANP 801 C 1 HETATM 6 O O1B ANP . . . I 2 110.559 139.64 178.313 1 173.74 ? O1B ANP 801 C 1 HETATM 7 O O2B ANP . . . I 2 111.985 140.43 176.362 1 173.74 ? O2B ANP 801 C 1 HETATM 8 N N3B ANP . . . I 2 111.73 137.974 176.795 1 173.74 ? N3B ANP 801 C 1 HETATM 9 P PA ANP . . . I 2 109.607 139.385 174.343 1 173.74 ? PA ANP 801 C 1 HETATM 10 O O1A ANP . . . I 2 110.242 138.261 173.627 1 173.74 ? O1A ANP 801 C 1 HETATM 11 O O2A ANP . . . I 2 110.115 140.768 173.942 1 173.74 ? O2A ANP 801 C 1 HETATM 12 O O3A ANP . . . I 2 109.813 139.258 175.91 1 173.74 ? O3A ANP 801 C 1 HETATM 13 O O5' ANP . . . I 2 108.037 139.371 174.178 1 173.74 ? O5' ANP 801 C 1 HETATM 14 C C5' ANP . . . I 2 107.284 138.144 174.274 1 173.74 ? C5' ANP 801 C 1 HETATM 15 C C4' ANP . . . I 2 106.543 137.879 172.985 1 173.74 ? C4' ANP 801 C 1 HETATM 16 O O4' ANP . . . I 2 105.251 138.527 173.022 1 173.74 ? O4' ANP 801 C 1 HETATM 17 C C3' ANP . . . I 2 107.228 138.36 171.707 1 173.74 ? C3' ANP 801 C 1 HETATM 18 O O3' ANP . . . I 2 107.03 137.437 170.643 1 173.74 ? O3' ANP 801 C 1 HETATM 19 C C2' ANP . . . I 2 106.539 139.698 171.431 1 173.74 ? C2' ANP 801 C 1 HETATM 20 O O2' ANP . . . I 2 106.524 140.007 170.043 1 173.74 ? O2' ANP 801 C 1 HETATM 21 C C1' ANP . . . I 2 105.123 139.424 171.936 1 173.74 ? C1' ANP 801 C 1 HETATM 22 N N9 ANP . . . I 2 104.428 140.614 172.411 1 173.74 ? N9 ANP 801 C 1 HETATM 23 C C8 ANP . . . I 2 104.945 141.611 173.195 1 173.74 ? C8 ANP 801 C 1 HETATM 24 N N7 ANP . . . I 2 104.095 142.568 173.476 1 173.74 ? N7 ANP 801 C 1 HETATM 25 C C5 ANP . . . I 2 102.932 142.172 172.832 1 173.74 ? C5 ANP 801 C 1 HETATM 26 C C6 ANP . . . I 2 101.653 142.753 172.738 1 173.74 ? C6 ANP 801 C 1 HETATM 27 N N6 ANP . . . I 2 101.315 143.908 173.32 1 173.74 ? N6 ANP 801 C 1 HETATM 28 N N1 ANP . . . I 2 100.718 142.099 172.016 1 173.74 ? N1 ANP 801 C 1 HETATM 29 C C2 ANP . . . I 2 101.048 140.944 171.433 1 173.74 ? C2 ANP 801 C 1 HETATM 30 N N3 ANP . . . I 2 102.217 140.301 171.451 1 173.74 ? N3 ANP 801 C 1 HETATM 31 C C4 ANP . . . I 2 103.123 140.969 172.171 1 173.74 ? C4 ANP 801 C 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 87 _model_server_stats.create_model_time_ms 161 _model_server_stats.query_time_ms 494 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #