data_8XJ7 # _model_server_result.job_id 4JRChD7E7bqIFLoBjQD36A _model_server_result.datetime_utc '2024-11-14 20:27:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xj7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":801}' # _entry.id 8XJ7 # _exptl.entry_id 8XJ7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XJ7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XJ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 L N N ? 3 N N N ? 3 O N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 510 A SER 510 1_555 I MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc2 H O1G ANP . A ANP 801 1_555 I MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc3 H O2B ANP . A ANP 801 1_555 I MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc4 B OG SER 510 B SER 510 1_555 K MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc5 J O1G ANP . B ANP 801 1_555 K MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc6 J O2B ANP . B ANP 801 1_555 K MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc7 C OG SER 510 C SER 510 1_555 M MG MG . C MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc8 L O1G ANP . C ANP 801 1_555 M MG MG . C MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc9 L O2B ANP . C ANP 801 1_555 M MG MG . C MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8XJ7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 3 ANP A 1 801 801 ANP ANP . I 4 MG A 1 802 1 MG MG . J 3 ANP B 1 801 801 ANP ANP . K 4 MG B 1 802 2 MG MG . L 3 ANP C 1 801 801 ANP ANP . M 4 MG C 1 802 3 MG MG . N 3 ANP D 1 801 801 ANP ANP . O 3 ANP E 1 801 801 ANP ANP . P 3 ANP F 1 801 801 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . J 3 147.33 114.591 141.315 1 51.28 ? PG ANP 801 B 1 HETATM 2 O O1G ANP . . . J 3 147.899 115.889 141.786 1 37.28 ? O1G ANP 801 B 1 HETATM 3 O O2G ANP . . . J 3 146.24 114.104 142.34 1 33.5 ? O2G ANP 801 B 1 HETATM 4 O O3G ANP . . . J 3 146.661 114.8 139.899 1 41.59 ? O3G ANP 801 B 1 HETATM 5 P PB ANP . . . J 3 149.49 113.753 139.846 1 9 ? PB ANP 801 B 1 HETATM 6 O O1B ANP . . . J 3 148.607 113.848 138.65 1 23 ? O1B ANP 801 B 1 HETATM 7 O O2B ANP . . . J 3 150.197 115.118 140.049 1 28.06 ? O2B ANP 801 B 1 HETATM 8 N N3B ANP . . . J 3 148.564 113.438 141.204 1 32.74 ? N3B ANP 801 B 1 HETATM 9 P PA ANP . . . J 3 151.749 112.429 140.641 1 23.18 ? PA ANP 801 B 1 HETATM 10 O O1A ANP . . . J 3 151.393 112.912 141.99 1 42.05 ? O1A ANP 801 B 1 HETATM 11 O O2A ANP . . . J 3 152.972 113.13 140.049 1 30.75 ? O2A ANP 801 B 1 HETATM 12 O O3A ANP . . . J 3 150.556 112.64 139.619 1 19.94 ? O3A ANP 801 B 1 HETATM 13 O O5' ANP . . . J 3 151.978 110.868 140.701 1 24.87 ? O5' ANP 801 B 1 HETATM 14 C C5' ANP . . . J 3 151.481 110.069 141.788 1 24.46 ? C5' ANP 801 B 1 HETATM 15 C C4' ANP . . . J 3 152.606 109.224 142.329 1 23.53 ? C4' ANP 801 B 1 HETATM 16 O O4' ANP . . . J 3 153.07 108.315 141.307 1 34.73 ? O4' ANP 801 B 1 HETATM 17 C C3' ANP . . . J 3 153.831 109.996 142.825 1 29.35 ? C3' ANP 801 B 1 HETATM 18 O O3' ANP . . . J 3 154.213 109.564 144.126 1 49.43 ? O3' ANP 801 B 1 HETATM 19 C C2' ANP . . . J 3 154.906 109.68 141.78 1 31.1 ? C2' ANP 801 B 1 HETATM 20 O O2' ANP . . . J 3 156.207 109.634 142.354 1 32.78 ? O2' ANP 801 B 1 HETATM 21 C C1' ANP . . . J 3 154.48 108.295 141.309 1 29.62 ? C1' ANP 801 B 1 HETATM 22 N N9 ANP . . . J 3 154.937 107.961 139.965 1 22.11 ? N9 ANP 801 B 1 HETATM 23 C C8 ANP . . . J 3 155.042 108.807 138.893 1 25.39 ? C8 ANP 801 B 1 HETATM 24 N N7 ANP . . . J 3 155.481 108.233 137.799 1 23.73 ? N7 ANP 801 B 1 HETATM 25 C C5 ANP . . . J 3 155.676 106.914 138.178 1 28.29 ? C5 ANP 801 B 1 HETATM 26 C C6 ANP . . . J 3 156.132 105.783 137.474 1 33.3 ? C6 ANP 801 B 1 HETATM 27 N N6 ANP . . . J 3 156.488 105.803 136.187 1 33.49 ? N6 ANP 801 B 1 HETATM 28 N N1 ANP . . . J 3 156.208 104.614 138.147 1 34.3 ? N1 ANP 801 B 1 HETATM 29 C C2 ANP . . . J 3 155.852 104.588 139.434 1 32 ? C2 ANP 801 B 1 HETATM 30 N N3 ANP . . . J 3 155.409 105.587 140.201 1 31.2 ? N3 ANP 801 B 1 HETATM 31 C C4 ANP . . . J 3 155.343 106.731 139.509 1 26.62 ? C4 ANP 801 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #