data_8XJF # _model_server_result.job_id RPWuqF7NfjR-8DFab_NvrA _model_server_result.datetime_utc '2025-01-11 15:41:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xjf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8XJF # _exptl.entry_id 8XJF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XJF _cell.length_a 60.06 _cell.length_b 69.74 _cell.length_c 104.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 60.06 0 52.16 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 189 n n N1 C6 EPE sing 190 n n N1 C9 EPE sing 191 n n C2 C3 EPE sing 192 n n C2 H21 EPE sing 193 n n C2 H22 EPE sing 194 n n C3 N4 EPE sing 195 n n C3 H31 EPE sing 196 n n C3 H32 EPE sing 197 n n N4 C5 EPE sing 198 n n N4 C7 EPE sing 199 n n C5 C6 EPE sing 200 n n C5 H51 EPE sing 201 n n C5 H52 EPE sing 202 n n C6 H61 EPE sing 203 n n C6 H62 EPE sing 204 n n C7 C8 EPE sing 205 n n C7 H71 EPE sing 206 n n C7 H72 EPE sing 207 n n C8 O8 EPE sing 208 n n C8 H81 EPE sing 209 n n C8 H82 EPE sing 210 n n O8 HO8 EPE sing 211 n n C9 C10 EPE sing 212 n n C9 H91 EPE sing 213 n n C9 H92 EPE sing 214 n n C10 S EPE sing 215 n n C10 H101 EPE sing 216 n n C10 H102 EPE sing 217 n n S O1S EPE doub 218 n n S O2S EPE doub 219 n n S O3S EPE sing 220 n n O3S HOS3 EPE sing 221 n n # _atom_sites.entry_id 8XJF _atom_sites.fract_transf_matrix[1][1] 0.01665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE A 1 301 301 EPE EPE . C 3 GOL A 1 302 302 GOL GOL . D 4 ABU A 1 303 303 ABU ABU . E 5 ACO A 1 304 304 ACO ACO . F 6 HOH A 1 401 401 HOH HOH . F 6 HOH A 2 402 402 HOH HOH . F 6 HOH A 3 403 403 HOH HOH . F 6 HOH A 4 404 407 HOH HOH . F 6 HOH A 5 405 404 HOH HOH . F 6 HOH A 6 406 406 HOH HOH . F 6 HOH A 7 407 411 HOH HOH . F 6 HOH A 8 408 405 HOH HOH . F 6 HOH A 9 409 412 HOH HOH . F 6 HOH A 10 410 408 HOH HOH . F 6 HOH A 11 411 414 HOH HOH . F 6 HOH A 12 412 410 HOH HOH . F 6 HOH A 13 413 413 HOH HOH . F 6 HOH A 14 414 415 HOH HOH . F 6 HOH A 15 415 417 HOH HOH . F 6 HOH A 16 416 409 HOH HOH . F 6 HOH A 17 417 418 HOH HOH . F 6 HOH A 18 418 416 HOH HOH . F 6 HOH A 19 419 420 HOH HOH . F 6 HOH A 20 420 421 HOH HOH . F 6 HOH A 21 421 419 HOH HOH . F 6 HOH A 22 422 422 HOH HOH . F 6 HOH A 23 423 423 HOH HOH . F 6 HOH A 24 424 427 HOH HOH . F 6 HOH A 25 425 426 HOH HOH . F 6 HOH A 26 426 424 HOH HOH . F 6 HOH A 27 427 425 HOH HOH . F 6 HOH A 28 428 428 HOH HOH . F 6 HOH A 29 429 429 HOH HOH . F 6 HOH A 30 430 430 HOH HOH . F 6 HOH A 31 431 431 HOH HOH . F 6 HOH A 32 432 432 HOH HOH . F 6 HOH A 33 433 433 HOH HOH . F 6 HOH A 34 434 434 HOH HOH . F 6 HOH A 35 435 435 HOH HOH . F 6 HOH A 36 436 436 HOH HOH . F 6 HOH A 37 437 437 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . B 2 19.583 18.254 26.683 1 38.47 ? N1 EPE 301 A 1 HETATM 2 C C2 EPE . . . B 2 20.996 18.007 26.341 1 40.65 ? C2 EPE 301 A 1 HETATM 3 C C3 EPE . . . B 2 21.118 17.481 24.937 1 38 ? C3 EPE 301 A 1 HETATM 4 N N4 EPE . . . B 2 20.629 18.467 23.976 1 40.13 ? N4 EPE 301 A 1 HETATM 5 C C5 EPE . . . B 2 19.226 18.857 24.314 1 38.22 ? C5 EPE 301 A 1 HETATM 6 C C6 EPE . . . B 2 19.067 19.29 25.768 1 36.92 ? C6 EPE 301 A 1 HETATM 7 C C7 EPE . . . B 2 20.775 17.893 22.634 1 38.1 ? C7 EPE 301 A 1 HETATM 8 C C8 EPE . . . B 2 20.533 18.855 21.51 1 42.56 ? C8 EPE 301 A 1 HETATM 9 O O8 EPE . . . B 2 19.161 19.156 21.408 1 42.25 ? O8 EPE 301 A 1 HETATM 10 C C9 EPE . . . B 2 19.445 18.606 28.108 1 37.83 ? C9 EPE 301 A 1 HETATM 11 C C10 EPE . . . B 2 19.621 17.419 29.049 1 39.37 ? C10 EPE 301 A 1 HETATM 12 S S EPE . . . B 2 20.665 17.771 30.443 1 44.06 ? S EPE 301 A 1 HETATM 13 O O1S EPE . . . B 2 20.676 16.597 31.261 1 39.8 ? O1S EPE 301 A 1 HETATM 14 O O2S EPE . . . B 2 21.907 18.248 29.899 1 48.43 ? O2S EPE 301 A 1 HETATM 15 O O3S EPE . . . B 2 20.025 18.893 31.273 1 37.86 ? O3S EPE 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #