data_8XJF # _model_server_result.job_id zX2ZTlrhSTIt6-QuIm5RTg _model_server_result.datetime_utc '2025-01-11 15:56:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xjf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8XJF # _exptl.entry_id 8XJF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XJF _cell.length_a 60.06 _cell.length_b 69.74 _cell.length_c 104.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 60.06 0 52.16 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 268 n n C1 C2 GOL sing 269 n n C1 H11 GOL sing 270 n n C1 H12 GOL sing 271 n n O1 HO1 GOL sing 272 n n C2 O2 GOL sing 273 n n C2 C3 GOL sing 274 n n C2 H2 GOL sing 275 n n O2 HO2 GOL sing 276 n n C3 O3 GOL sing 277 n n C3 H31 GOL sing 278 n n C3 H32 GOL sing 279 n n O3 HO3 GOL sing 280 n n # _atom_sites.entry_id 8XJF _atom_sites.fract_transf_matrix[1][1] 0.01665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE A 1 301 301 EPE EPE . C 3 GOL A 1 302 302 GOL GOL . D 4 ABU A 1 303 303 ABU ABU . E 5 ACO A 1 304 304 ACO ACO . F 6 HOH A 1 401 401 HOH HOH . F 6 HOH A 2 402 402 HOH HOH . F 6 HOH A 3 403 403 HOH HOH . F 6 HOH A 4 404 407 HOH HOH . F 6 HOH A 5 405 404 HOH HOH . F 6 HOH A 6 406 406 HOH HOH . F 6 HOH A 7 407 411 HOH HOH . F 6 HOH A 8 408 405 HOH HOH . F 6 HOH A 9 409 412 HOH HOH . F 6 HOH A 10 410 408 HOH HOH . F 6 HOH A 11 411 414 HOH HOH . F 6 HOH A 12 412 410 HOH HOH . F 6 HOH A 13 413 413 HOH HOH . F 6 HOH A 14 414 415 HOH HOH . F 6 HOH A 15 415 417 HOH HOH . F 6 HOH A 16 416 409 HOH HOH . F 6 HOH A 17 417 418 HOH HOH . F 6 HOH A 18 418 416 HOH HOH . F 6 HOH A 19 419 420 HOH HOH . F 6 HOH A 20 420 421 HOH HOH . F 6 HOH A 21 421 419 HOH HOH . F 6 HOH A 22 422 422 HOH HOH . F 6 HOH A 23 423 423 HOH HOH . F 6 HOH A 24 424 427 HOH HOH . F 6 HOH A 25 425 426 HOH HOH . F 6 HOH A 26 426 424 HOH HOH . F 6 HOH A 27 427 425 HOH HOH . F 6 HOH A 28 428 428 HOH HOH . F 6 HOH A 29 429 429 HOH HOH . F 6 HOH A 30 430 430 HOH HOH . F 6 HOH A 31 431 431 HOH HOH . F 6 HOH A 32 432 432 HOH HOH . F 6 HOH A 33 433 433 HOH HOH . F 6 HOH A 34 434 434 HOH HOH . F 6 HOH A 35 435 435 HOH HOH . F 6 HOH A 36 436 436 HOH HOH . F 6 HOH A 37 437 437 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 27.001 19.996 28.809 1 60.34 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 3 27.682 19.809 27.57 1 68.68 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 3 25.982 18.904 29.064 1 63.05 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 3 25.334 19.094 30.323 1 53.37 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 3 24.914 18.834 27.999 1 69.46 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 3 23.972 17.81 28.287 1 59.91 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #