data_8XJF # _model_server_result.job_id rCDf4yWoSGyXotxmapAXRw _model_server_result.datetime_utc '2025-01-11 15:48:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xjf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8XJF # _exptl.entry_id 8XJF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 103.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GAMMA-AMINO-BUTANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XJF _cell.length_a 60.06 _cell.length_b 69.74 _cell.length_c 104.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 60.06 0 52.16 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H9 N O2' _chem_comp.formula_weight 103.12 _chem_comp.id ABU _chem_comp.mon_nstd_flag . _chem_comp.name 'GAMMA-AMINO-BUTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'GAMMA(AMINO)-BUTYRIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CD ABU sing 1 n n N H ABU sing 2 n n N H2 ABU sing 3 n n CD CB ABU sing 4 n n CD HA1 ABU sing 5 n n CD HA2 ABU sing 6 n n CB CG ABU sing 7 n n CB HB1 ABU sing 8 n n CB HB2 ABU sing 9 n n CG C ABU sing 10 n n CG HG1 ABU sing 11 n n CG HG2 ABU sing 12 n n C O ABU doub 13 n n C OXT ABU sing 14 n n OXT HXT ABU sing 15 n n # _atom_sites.entry_id 8XJF _atom_sites.fract_transf_matrix[1][1] 0.01665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE A 1 301 301 EPE EPE . C 3 GOL A 1 302 302 GOL GOL . D 4 ABU A 1 303 303 ABU ABU . E 5 ACO A 1 304 304 ACO ACO . F 6 HOH A 1 401 401 HOH HOH . F 6 HOH A 2 402 402 HOH HOH . F 6 HOH A 3 403 403 HOH HOH . F 6 HOH A 4 404 407 HOH HOH . F 6 HOH A 5 405 404 HOH HOH . F 6 HOH A 6 406 406 HOH HOH . F 6 HOH A 7 407 411 HOH HOH . F 6 HOH A 8 408 405 HOH HOH . F 6 HOH A 9 409 412 HOH HOH . F 6 HOH A 10 410 408 HOH HOH . F 6 HOH A 11 411 414 HOH HOH . F 6 HOH A 12 412 410 HOH HOH . F 6 HOH A 13 413 413 HOH HOH . F 6 HOH A 14 414 415 HOH HOH . F 6 HOH A 15 415 417 HOH HOH . F 6 HOH A 16 416 409 HOH HOH . F 6 HOH A 17 417 418 HOH HOH . F 6 HOH A 18 418 416 HOH HOH . F 6 HOH A 19 419 420 HOH HOH . F 6 HOH A 20 420 421 HOH HOH . F 6 HOH A 21 421 419 HOH HOH . F 6 HOH A 22 422 422 HOH HOH . F 6 HOH A 23 423 423 HOH HOH . F 6 HOH A 24 424 427 HOH HOH . F 6 HOH A 25 425 426 HOH HOH . F 6 HOH A 26 426 424 HOH HOH . F 6 HOH A 27 427 425 HOH HOH . F 6 HOH A 28 428 428 HOH HOH . F 6 HOH A 29 429 429 HOH HOH . F 6 HOH A 30 430 430 HOH HOH . F 6 HOH A 31 431 431 HOH HOH . F 6 HOH A 32 432 432 HOH HOH . F 6 HOH A 33 433 433 HOH HOH . F 6 HOH A 34 434 434 HOH HOH . F 6 HOH A 35 435 435 HOH HOH . F 6 HOH A 36 436 436 HOH HOH . F 6 HOH A 37 437 437 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ABU . . . D 4 21.823 14.499 32.033 1 42.07 ? N ABU 303 A 1 HETATM 2 C CD ABU . . . D 4 21.986 13.266 32.826 1 61.97 ? CD ABU 303 A 1 HETATM 3 C CB ABU . . . D 4 20.76 12.514 33.331 1 63.49 ? CB ABU 303 A 1 HETATM 4 C CG ABU . . . D 4 21.047 11.67 34.574 1 67.96 ? CG ABU 303 A 1 HETATM 5 C C ABU . . . D 4 20.934 12.423 35.892 1 74.7 ? C ABU 303 A 1 HETATM 6 O O ABU . . . D 4 21.891 13.143 36.24 1 76.94 ? O ABU 303 A 1 HETATM 7 O OXT ABU . . . D 4 19.896 12.3 36.576 1 79.08 ? OXT ABU 303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #