data_8XJF # _model_server_result.job_id dH3PdR0arVSot6Z6nBbt0g _model_server_result.datetime_utc '2025-01-11 15:43:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xjf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 8XJF # _exptl.entry_id 8XJF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XJF _cell.length_a 60.06 _cell.length_b 69.74 _cell.length_c 104.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 60.06 0 52.16 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 16 n y N1A C6A ACO doub 17 n y C2A N3A ACO doub 18 n y C2A H2A ACO sing 19 n n N3A C4A ACO sing 20 n y C4A C5A ACO doub 21 n y C4A N9A ACO sing 22 n y C5A C6A ACO sing 23 n y C5A N7A ACO sing 24 n y C6A N6A ACO sing 25 n n N6A H61A ACO sing 26 n n N6A H62A ACO sing 27 n n N7A C8A ACO doub 28 n y C8A N9A ACO sing 29 n y C8A H8A ACO sing 30 n n N9A C1B ACO sing 31 n n C1B C2B ACO sing 32 n n C1B O4B ACO sing 33 n n C1B H1B ACO sing 34 n n C2B O2B ACO sing 35 n n C2B C3B ACO sing 36 n n C2B H2B ACO sing 37 n n O2B HO2A ACO sing 38 n n C3B O3B ACO sing 39 n n C3B C4B ACO sing 40 n n C3B H3B ACO sing 41 n n O3B P3B ACO sing 42 n n P3B O7A ACO doub 43 n n P3B O8A ACO sing 44 n n P3B O9A ACO sing 45 n n O8A HOA8 ACO sing 46 n n O9A HOA9 ACO sing 47 n n C4B O4B ACO sing 48 n n C4B C5B ACO sing 49 n n C4B H4B ACO sing 50 n n C5B O5B ACO sing 51 n n C5B H51A ACO sing 52 n n C5B H52A ACO sing 53 n n O5B P1A ACO sing 54 n n P1A O1A ACO doub 55 n n P1A O2A ACO sing 56 n n P1A O3A ACO sing 57 n n O2A HOA2 ACO sing 58 n n O3A P2A ACO sing 59 n n P2A O4A ACO doub 60 n n P2A O5A ACO sing 61 n n P2A O6A ACO sing 62 n n O5A HOA5 ACO sing 63 n n O6A CCP ACO sing 64 n n CBP CCP ACO sing 65 n n CBP CDP ACO sing 66 n n CBP CEP ACO sing 67 n n CBP CAP ACO sing 68 n n CCP H121 ACO sing 69 n n CCP H122 ACO sing 70 n n CDP H131 ACO sing 71 n n CDP H132 ACO sing 72 n n CDP H133 ACO sing 73 n n CEP H141 ACO sing 74 n n CEP H142 ACO sing 75 n n CEP H143 ACO sing 76 n n CAP OAP ACO sing 77 n n CAP C9P ACO sing 78 n n CAP H10 ACO sing 79 n n OAP HO1 ACO sing 80 n n C9P O9P ACO doub 81 n n C9P N8P ACO sing 82 n n N8P C7P ACO sing 83 n n N8P HN8 ACO sing 84 n n C7P C6P ACO sing 85 n n C7P H71 ACO sing 86 n n C7P H72 ACO sing 87 n n C6P C5P ACO sing 88 n n C6P H61 ACO sing 89 n n C6P H62 ACO sing 90 n n C5P O5P ACO doub 91 n n C5P N4P ACO sing 92 n n N4P C3P ACO sing 93 n n N4P HN4 ACO sing 94 n n C3P C2P ACO sing 95 n n C3P H31 ACO sing 96 n n C3P H32 ACO sing 97 n n C2P S1P ACO sing 98 n n C2P H21 ACO sing 99 n n C2P H22 ACO sing 100 n n S1P C ACO sing 101 n n C O ACO doub 102 n n C CH3 ACO sing 103 n n CH3 HH31 ACO sing 104 n n CH3 HH32 ACO sing 105 n n CH3 HH33 ACO sing 106 n n # _atom_sites.entry_id 8XJF _atom_sites.fract_transf_matrix[1][1] 0.01665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE A 1 301 301 EPE EPE . C 3 GOL A 1 302 302 GOL GOL . D 4 ABU A 1 303 303 ABU ABU . E 5 ACO A 1 304 304 ACO ACO . F 6 HOH A 1 401 401 HOH HOH . F 6 HOH A 2 402 402 HOH HOH . F 6 HOH A 3 403 403 HOH HOH . F 6 HOH A 4 404 407 HOH HOH . F 6 HOH A 5 405 404 HOH HOH . F 6 HOH A 6 406 406 HOH HOH . F 6 HOH A 7 407 411 HOH HOH . F 6 HOH A 8 408 405 HOH HOH . F 6 HOH A 9 409 412 HOH HOH . F 6 HOH A 10 410 408 HOH HOH . F 6 HOH A 11 411 414 HOH HOH . F 6 HOH A 12 412 410 HOH HOH . F 6 HOH A 13 413 413 HOH HOH . F 6 HOH A 14 414 415 HOH HOH . F 6 HOH A 15 415 417 HOH HOH . F 6 HOH A 16 416 409 HOH HOH . F 6 HOH A 17 417 418 HOH HOH . F 6 HOH A 18 418 416 HOH HOH . F 6 HOH A 19 419 420 HOH HOH . F 6 HOH A 20 420 421 HOH HOH . F 6 HOH A 21 421 419 HOH HOH . F 6 HOH A 22 422 422 HOH HOH . F 6 HOH A 23 423 423 HOH HOH . F 6 HOH A 24 424 427 HOH HOH . F 6 HOH A 25 425 426 HOH HOH . F 6 HOH A 26 426 424 HOH HOH . F 6 HOH A 27 427 425 HOH HOH . F 6 HOH A 28 428 428 HOH HOH . F 6 HOH A 29 429 429 HOH HOH . F 6 HOH A 30 430 430 HOH HOH . F 6 HOH A 31 431 431 HOH HOH . F 6 HOH A 32 432 432 HOH HOH . F 6 HOH A 33 433 433 HOH HOH . F 6 HOH A 34 434 434 HOH HOH . F 6 HOH A 35 435 435 HOH HOH . F 6 HOH A 36 436 436 HOH HOH . F 6 HOH A 37 437 437 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . E 5 15.059 11.219 11.421 1 81.43 ? N1A ACO 304 A 1 HETATM 2 C C2A ACO . . . E 5 15.462 12.315 10.761 1 77.55 ? C2A ACO 304 A 1 HETATM 3 N N3A ACO . . . E 5 16.327 12.421 9.757 1 72.84 ? N3A ACO 304 A 1 HETATM 4 C C4A ACO . . . E 5 16.834 11.217 9.447 1 70.49 ? C4A ACO 304 A 1 HETATM 5 C C5A ACO . . . E 5 16.527 10.004 10.034 1 68.18 ? C5A ACO 304 A 1 HETATM 6 C C6A ACO . . . E 5 15.587 10.019 11.081 1 68.12 ? C6A ACO 304 A 1 HETATM 7 N N6A ACO . . . E 5 15.184 8.933 11.734 1 65.69 ? N6A ACO 304 A 1 HETATM 8 N N7A ACO . . . E 5 17.239 8.973 9.433 1 69.47 ? N7A ACO 304 A 1 HETATM 9 C C8A ACO . . . E 5 17.964 9.573 8.514 1 74.79 ? C8A ACO 304 A 1 HETATM 10 N N9A ACO . . . E 5 17.768 10.947 8.487 1 72.77 ? N9A ACO 304 A 1 HETATM 11 C C1B ACO . . . E 5 18.405 11.91 7.569 1 73.74 ? C1B ACO 304 A 1 HETATM 12 C C2B ACO . . . E 5 17.738 11.863 6.193 1 73.79 ? C2B ACO 304 A 1 HETATM 13 O O2B ACO . . . E 5 18.704 11.758 5.166 1 73.29 ? O2B ACO 304 A 1 HETATM 14 C C3B ACO . . . E 5 16.973 13.188 6.161 1 67.06 ? C3B ACO 304 A 1 HETATM 15 O O3B ACO . . . E 5 16.713 13.562 4.808 1 69.34 ? O3B ACO 304 A 1 HETATM 16 P P3B ACO . . . E 5 15.324 12.906 4.203 1 79.83 ? P3B ACO 304 A 1 HETATM 17 O O7A ACO . . . E 5 15.366 13.303 2.736 1 70.32 ? O7A ACO 304 A 1 HETATM 18 O O8A ACO . . . E 5 15.302 11.391 4.405 1 56.71 ? O8A ACO 304 A 1 HETATM 19 O O9A ACO . . . E 5 14.153 13.563 4.929 1 78.26 ? O9A ACO 304 A 1 HETATM 20 C C4B ACO . . . E 5 17.961 14.081 6.9 1 65.2 ? C4B ACO 304 A 1 HETATM 21 O O4B ACO . . . E 5 18.302 13.244 8.037 1 65.65 ? O4B ACO 304 A 1 HETATM 22 C C5B ACO . . . E 5 17.472 15.452 7.323 1 67.56 ? C5B ACO 304 A 1 HETATM 23 O O5B ACO . . . E 5 16.246 15.358 8.114 1 64.66 ? O5B ACO 304 A 1 HETATM 24 P P1A ACO . . . E 5 15.32 16.647 8.417 1 55.33 ? P1A ACO 304 A 1 HETATM 25 O O1A ACO . . . E 5 14.021 16.512 7.693 1 58.21 ? O1A ACO 304 A 1 HETATM 26 O O2A ACO . . . E 5 16.037 17.937 8.227 1 52.4 ? O2A ACO 304 A 1 HETATM 27 O O3A ACO . . . E 5 15.072 16.368 9.979 1 54.17 ? O3A ACO 304 A 1 HETATM 28 P P2A ACO . . . E 5 14.04 16.933 11.072 1 49.76 ? P2A ACO 304 A 1 HETATM 29 O O4A ACO . . . E 5 13.502 18.244 10.611 1 40.46 ? O4A ACO 304 A 1 HETATM 30 O O5A ACO . . . E 5 13.175 15.812 11.53 1 48.54 ? O5A ACO 304 A 1 HETATM 31 O O6A ACO . . . E 5 15.038 17.326 12.294 1 51.04 ? O6A ACO 304 A 1 HETATM 32 C CBP ACO . . . E 5 15.565 16.443 14.51 1 48.79 ? CBP ACO 304 A 1 HETATM 33 C CCP ACO . . . E 5 15.773 16.289 13.002 1 48.71 ? CCP ACO 304 A 1 HETATM 34 C CDP ACO . . . E 5 16.475 15.454 15.248 1 48.1 ? CDP ACO 304 A 1 HETATM 35 C CEP ACO . . . E 5 15.945 17.858 14.958 1 46.41 ? CEP ACO 304 A 1 HETATM 36 C CAP ACO . . . E 5 14.097 16.158 14.863 1 47.76 ? CAP ACO 304 A 1 HETATM 37 O OAP ACO . . . E 5 13.764 14.84 14.427 1 49.17 ? OAP ACO 304 A 1 HETATM 38 C C9P ACO . . . E 5 13.785 16.259 16.346 1 43.81 ? C9P ACO 304 A 1 HETATM 39 O O9P ACO . . . E 5 13.74 17.361 16.898 1 41.84 ? O9P ACO 304 A 1 HETATM 40 N N8P ACO . . . E 5 13.584 15.103 16.967 1 41.77 ? N8P ACO 304 A 1 HETATM 41 C C7P ACO . . . E 5 13.282 14.964 18.385 1 50.43 ? C7P ACO 304 A 1 HETATM 42 C C6P ACO . . . E 5 14.378 15.503 19.274 1 62.16 ? C6P ACO 304 A 1 HETATM 43 C C5P ACO . . . E 5 15.677 14.779 18.995 1 73.9 ? C5P ACO 304 A 1 HETATM 44 O O5P ACO . . . E 5 15.667 13.597 18.652 1 77.52 ? O5P ACO 304 A 1 HETATM 45 N N4P ACO . . . E 5 16.825 15.43 19.209 1 79.99 ? N4P ACO 304 A 1 HETATM 46 C C3P ACO . . . E 5 16.992 16.559 20.11 1 78.63 ? C3P ACO 304 A 1 HETATM 47 C C2P ACO . . . E 5 17.553 16.086 21.418 1 73.19 ? C2P ACO 304 A 1 HETATM 48 S S1P ACO . . . E 5 18.487 14.542 21.153 1 92.47 ? S1P ACO 304 A 1 HETATM 49 C C ACO . . . E 5 19.334 13.763 22.464 1 40.32 ? C ACO 304 A 1 HETATM 50 O O ACO . . . E 5 19.915 12.733 22.311 1 51.73 ? O ACO 304 A 1 HETATM 51 C CH3 ACO . . . E 5 19.232 14.459 23.748 1 55.34 ? CH3 ACO 304 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 51 #