data_8XJH # _model_server_result.job_id 00TgRq7TQ5gg4YNWWwgSRg _model_server_result.datetime_utc '2025-01-08 17:37:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xjh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8XJH # _exptl.entry_id 8XJH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XJH _cell.length_a 55.45 _cell.length_b 85.55 _cell.length_c 86.17 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XJH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 300 n n C1 C2 GOL sing 301 n n C1 H11 GOL sing 302 n n C1 H12 GOL sing 303 n n O1 HO1 GOL sing 304 n n C2 O2 GOL sing 305 n n C2 C3 GOL sing 306 n n C2 H2 GOL sing 307 n n O2 HO2 GOL sing 308 n n C3 O3 GOL sing 309 n n C3 H31 GOL sing 310 n n C3 H32 GOL sing 311 n n O3 HO3 GOL sing 312 n n # _atom_sites.entry_id 8XJH _atom_sites.fract_transf_matrix[1][1] 0.018034 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 301 305 GOL GOL . D 3 5NG A 1 302 306 5NG 5NG . E 3 5NG B 1 301 301 5NG 5NG . F 4 HOH A 1 401 101 HOH HOH . F 4 HOH A 2 402 15 HOH HOH . F 4 HOH A 3 403 6 HOH HOH . F 4 HOH A 4 404 68 HOH HOH . F 4 HOH A 5 405 17 HOH HOH . F 4 HOH A 6 406 10 HOH HOH . F 4 HOH A 7 407 24 HOH HOH . F 4 HOH A 8 408 100 HOH HOH . F 4 HOH A 9 409 74 HOH HOH . F 4 HOH A 10 410 49 HOH HOH . F 4 HOH A 11 411 60 HOH HOH . F 4 HOH A 12 412 43 HOH HOH . F 4 HOH A 13 413 28 HOH HOH . F 4 HOH A 14 414 1 HOH HOH . F 4 HOH A 15 415 8 HOH HOH . F 4 HOH A 16 416 16 HOH HOH . F 4 HOH A 17 417 13 HOH HOH . F 4 HOH A 18 418 93 HOH HOH . F 4 HOH A 19 419 113 HOH HOH . F 4 HOH A 20 420 3 HOH HOH . F 4 HOH A 21 421 35 HOH HOH . F 4 HOH A 22 422 32 HOH HOH . F 4 HOH A 23 423 44 HOH HOH . F 4 HOH A 24 424 65 HOH HOH . F 4 HOH A 25 425 54 HOH HOH . F 4 HOH A 26 426 5 HOH HOH . F 4 HOH A 27 427 73 HOH HOH . F 4 HOH A 28 428 50 HOH HOH . F 4 HOH A 29 429 72 HOH HOH . F 4 HOH A 30 430 14 HOH HOH . F 4 HOH A 31 431 58 HOH HOH . F 4 HOH A 32 432 26 HOH HOH . F 4 HOH A 33 433 37 HOH HOH . F 4 HOH A 34 434 78 HOH HOH . F 4 HOH A 35 435 45 HOH HOH . F 4 HOH A 36 436 21 HOH HOH . F 4 HOH A 37 437 85 HOH HOH . F 4 HOH A 38 438 114 HOH HOH . F 4 HOH A 39 439 48 HOH HOH . F 4 HOH A 40 440 103 HOH HOH . F 4 HOH A 41 441 102 HOH HOH . F 4 HOH A 42 442 112 HOH HOH . F 4 HOH A 43 443 84 HOH HOH . G 4 HOH B 1 401 23 HOH HOH . G 4 HOH B 2 402 12 HOH HOH . G 4 HOH B 3 403 62 HOH HOH . G 4 HOH B 4 404 61 HOH HOH . G 4 HOH B 5 405 52 HOH HOH . G 4 HOH B 6 406 31 HOH HOH . G 4 HOH B 7 407 94 HOH HOH . G 4 HOH B 8 408 18 HOH HOH . G 4 HOH B 9 409 2 HOH HOH . G 4 HOH B 10 410 20 HOH HOH . G 4 HOH B 11 411 55 HOH HOH . G 4 HOH B 12 412 63 HOH HOH . G 4 HOH B 13 413 7 HOH HOH . G 4 HOH B 14 414 51 HOH HOH . G 4 HOH B 15 415 89 HOH HOH . G 4 HOH B 16 416 64 HOH HOH . G 4 HOH B 17 417 83 HOH HOH . G 4 HOH B 18 418 104 HOH HOH . G 4 HOH B 19 419 38 HOH HOH . G 4 HOH B 20 420 29 HOH HOH . G 4 HOH B 21 421 4 HOH HOH . G 4 HOH B 22 422 25 HOH HOH . G 4 HOH B 23 423 69 HOH HOH . G 4 HOH B 24 424 66 HOH HOH . G 4 HOH B 25 425 105 HOH HOH . G 4 HOH B 26 426 53 HOH HOH . G 4 HOH B 27 427 9 HOH HOH . G 4 HOH B 28 428 67 HOH HOH . G 4 HOH B 29 429 42 HOH HOH . G 4 HOH B 30 430 57 HOH HOH . G 4 HOH B 31 431 59 HOH HOH . G 4 HOH B 32 432 27 HOH HOH . G 4 HOH B 33 433 77 HOH HOH . G 4 HOH B 34 434 30 HOH HOH . G 4 HOH B 35 435 88 HOH HOH . G 4 HOH B 36 436 36 HOH HOH . G 4 HOH B 37 437 79 HOH HOH . G 4 HOH B 38 438 40 HOH HOH . G 4 HOH B 39 439 109 HOH HOH . G 4 HOH B 40 440 98 HOH HOH . G 4 HOH B 41 441 47 HOH HOH . G 4 HOH B 42 442 108 HOH HOH . G 4 HOH B 43 443 11 HOH HOH . G 4 HOH B 44 444 76 HOH HOH . G 4 HOH B 45 445 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 44.993 5.789 -13.011 1 58.95 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . C 2 44.754 5.51 -11.64 1 54.92 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . C 2 43.884 5.24 -13.87 1 57.96 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . C 2 43.933 5.829 -15.168 1 54.66 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . C 2 42.522 5.476 -13.264 1 59.19 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . C 2 41.536 5.492 -14.283 1 54.07 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #