data_8XJL
#
_model_server_result.job_id            5lDt50LfnvXBDc2J4jexuA 
_model_server_result.datetime_utc      '2024-10-19 10:25:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xjl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    8XJL 
#
_exptl.entry_id    8XJL 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              354.481 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(Z)-7-[(1R,2R,3R,5S)-3,5-bis(oxidanyl)-2-[(E,3S)-3-oxidanyloct-1-enyl]cyclopentyl]hept-5-enoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8XJL 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8XJL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 21 E CYS 21 1_555 D SG CYS 95 E CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 D SG CYS 158 E CYS 159 1_555 D SG CYS 228 E CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 E SG CYS 193 R CYS 108 1_555 E SG CYS 271 R CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C20 H34 O5' 
_chem_comp.formula_weight    354.481 
_chem_comp.id                UGU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(Z)-7-[(1R,2R,3R,5S)-3,5-bis(oxidanyl)-2-[(E,3S)-3-oxidanyloct-1-enyl]cyclopentyl]hept-5-enoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Dinoprost;Prostaglandin F2a;PGF2alpha' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 UGU doub 356 n n 
C2 C1 UGU sing 357 n n 
C2 C3 UGU sing 358 n n 
C1 O2 UGU sing 359 n n 
C4 C3 UGU sing 360 n n 
C4 C5 UGU sing 361 n n 
C5 C6 UGU doub 362 z n 
C6 C7 UGU sing 363 n n 
C7 C8 UGU sing 364 n n 
O3 C9 UGU sing 365 n n 
C8 C9 UGU sing 366 n n 
C8 C12 UGU sing 367 n n 
C20 C19 UGU sing 368 n n 
C9 C10 UGU sing 369 n n 
C12 C13 UGU sing 370 n n 
C12 C11 UGU sing 371 n n 
C13 C14 UGU doub 372 e n 
C19 C18 UGU sing 373 n n 
C10 C11 UGU sing 374 n n 
C16 C15 UGU sing 375 n n 
C16 C17 UGU sing 376 n n 
C14 C15 UGU sing 377 n n 
C18 C17 UGU sing 378 n n 
C11 O4 UGU sing 379 n n 
C15 O5 UGU sing 380 n n 
C2 H1 UGU sing 381 n n 
C2 H2 UGU sing 382 n n 
C3 H3 UGU sing 383 n n 
C3 H4 UGU sing 384 n n 
C4 H5 UGU sing 385 n n 
C4 H6 UGU sing 386 n n 
C5 H7 UGU sing 387 n n 
C6 H8 UGU sing 388 n n 
C7 H9 UGU sing 389 n n 
C7 H10 UGU sing 390 n n 
C8 H11 UGU sing 391 n n 
C9 H12 UGU sing 392 n n 
O3 H13 UGU sing 393 n n 
C12 H14 UGU sing 394 n n 
C11 H15 UGU sing 395 n n 
O4 H16 UGU sing 396 n n 
C10 H17 UGU sing 397 n n 
C10 H18 UGU sing 398 n n 
C13 H19 UGU sing 399 n n 
C14 H21 UGU sing 400 n n 
C15 H23 UGU sing 401 n n 
O5 H24 UGU sing 402 n n 
C16 H25 UGU sing 403 n n 
C16 H26 UGU sing 404 n n 
C17 H27 UGU sing 405 n n 
C17 H28 UGU sing 406 n n 
C18 H29 UGU sing 407 n n 
C18 H30 UGU sing 408 n n 
C19 H31 UGU sing 409 n n 
C19 H32 UGU sing 410 n n 
C20 H33 UGU sing 411 n n 
C20 H34 UGU sing 412 n n 
C20 H35 UGU sing 413 n n 
O2 H36 UGU sing 414 n n 
#
_atom_sites.entry_id                     8XJL 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           UGU 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      601 
_pdbx_nonpoly_scheme.auth_seq_num     401 
_pdbx_nonpoly_scheme.pdb_mon_id       UGU 
_pdbx_nonpoly_scheme.auth_mon_id      PGF 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 UGU . . . F 6 92.658 129.289 123.96 1 54.18 ? C2 UGU 601 R 1 
HETATM 2 C C3 UGU . . . F 6 93.976 128.62 124.412 1 50.49 ? C3 UGU 601 R 1 
HETATM 3 C C4 UGU . . . F 6 93.896 127.082 124.231 1 50.5 ? C4 UGU 601 R 1 
HETATM 4 C C5 UGU . . . F 6 95.251 126.405 124.548 1 51.14 ? C5 UGU 601 R 1 
HETATM 5 C C6 UGU . . . F 6 95.66 125.434 123.704 1 51.16 ? C6 UGU 601 R 1 
HETATM 6 C C7 UGU . . . F 6 94.664 125.163 122.533 1 51.82 ? C7 UGU 601 R 1 
HETATM 7 C C8 UGU . . . F 6 94.199 123.691 122.581 1 50.93 ? C8 UGU 601 R 1 
HETATM 8 C C9 UGU . . . F 6 92.999 123.588 123.163 1 52.67 ? C9 UGU 601 R 1 
HETATM 9 O O3 UGU . . . F 6 92.189 124.77 122.898 1 53.35 ? O3 UGU 601 R 1 
HETATM 10 C C12 UGU . . . F 6 93.986 123.072 121.019 1 48.45 ? C12 UGU 601 R 1 
HETATM 11 C C11 UGU . . . F 6 93.211 122.019 121.17 1 49.91 ? C11 UGU 601 R 1 
HETATM 12 O O4 UGU . . . F 6 92.335 121.86 120.022 1 52.13 ? O4 UGU 601 R 1 
HETATM 13 C C10 UGU . . . F 6 92.324 122.322 122.487 1 50.82 ? C10 UGU 601 R 1 
HETATM 14 C C13 UGU . . . F 6 95.362 122.651 120.429 1 49.51 ? C13 UGU 601 R 1 
HETATM 15 C C14 UGU . . . F 6 95.317 122.42 119.086 1 52.21 ? C14 UGU 601 R 1 
HETATM 16 C C15 UGU . . . F 6 96.675 122.005 118.508 1 52.35 ? C15 UGU 601 R 1 
HETATM 17 O O5 UGU . . . F 6 96.623 122.039 117.118 1 50.99 ? O5 UGU 601 R 1 
HETATM 18 C C16 UGU . . . F 6 97.767 122.976 119.006 1 49.73 ? C16 UGU 601 R 1 
HETATM 19 C C17 UGU . . . F 6 98.067 124.119 117.998 1 45.99 ? C17 UGU 601 R 1 
HETATM 20 C C18 UGU . . . F 6 98.964 125.215 118.634 1 48.55 ? C18 UGU 601 R 1 
HETATM 21 C C19 UGU . . . F 6 100.191 125.557 117.753 1 49.32 ? C19 UGU 601 R 1 
HETATM 22 C C20 UGU . . . F 6 100.992 126.754 118.309 1 46.99 ? C20 UGU 601 R 1 
HETATM 23 O O1 UGU . . . F 6 92.074 129.381 126.319 1 56.82 ? O1 UGU 601 R 1 
HETATM 24 C C1 UGU . . . F 6 91.706 129.59 125.13 1 57.2 ? C1 UGU 601 R 1 
HETATM 25 O O2 UGU . . . F 6 90.548 130.04 124.9 1 56.28 ? O2 UGU 601 R 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           25 
#