data_8XJN
#
_model_server_result.job_id            jgizyUllaiAlMKp8TRmZvQ 
_model_server_result.datetime_utc      '2024-10-19 09:20:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xjn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    8XJN 
#
_exptl.entry_id    8XJN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              424.915 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(~{Z})-7-[(1~{R},2~{R},3~{R},5~{S})-2-[(~{E},3~{R})-4-(3-chloranylphenoxy)-3-oxidanyl-but-1-enyl]-3,5-bis(oxidanyl)cyclopentyl]hept-5-enoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8XJN 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8XJN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 22 E CYS 22 1_555 D SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 D SG CYS 159 E CYS 159 1_555 D SG CYS 229 E CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 E SG CYS 64 R CYS 11 1_555 E SG CYS 155 R CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 E SG CYS 158 R CYS 105 1_555 E SG CYS 236 R CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C22 H29 Cl O6' 
_chem_comp.formula_weight    424.915 
_chem_comp.id                A1D5A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(~{Z})-7-[(1~{R},2~{R},3~{R},5~{S})-2-[(~{E},3~{R})-4-(3-chloranylphenoxy)-3-oxidanyl-but-1-enyl]-3,5-bis(oxidanyl)cyclopentyl]hept-5-enoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     cloprostenol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O28 C18 A1D5A sing 1 n n 
C23 C24 A1D5A doub 2 n y 
C23 C22 A1D5A sing 3 n y 
C24 C25 A1D5A sing 4 n y 
C22 C21 A1D5A doub 5 n y 
C25 CL27 A1D5A sing 6 n n 
C25 C26 A1D5A doub 7 n y 
C21 C26 A1D5A sing 8 n y 
C21 O20 A1D5A sing 9 n n 
O20 C19 A1D5A sing 10 n n 
C18 C19 A1D5A sing 11 n n 
C18 C17 A1D5A sing 12 n n 
C17 C16 A1D5A doub 13 e n 
O29 C14 A1D5A sing 14 n n 
C16 C15 A1D5A sing 15 n n 
C15 C14 A1D5A sing 16 n n 
C15 C10 A1D5A sing 17 n n 
C14 C13 A1D5A sing 18 n n 
C13 C11 A1D5A sing 19 n n 
C10 C09 A1D5A sing 20 n n 
C10 C11 A1D5A sing 21 n n 
C09 C08 A1D5A sing 22 n n 
O12 C11 A1D5A sing 23 n n 
C08 C07 A1D5A doub 24 z n 
C04 C05 A1D5A sing 25 n n 
C04 C02 A1D5A sing 26 n n 
C06 C07 A1D5A sing 27 n n 
C06 C05 A1D5A sing 28 n n 
O01 C02 A1D5A doub 29 n n 
C02 O03 A1D5A sing 30 n n 
C10 H1 A1D5A sing 31 n n 
C13 H2 A1D5A sing 32 n n 
C13 H3 A1D5A sing 33 n n 
C15 H4 A1D5A sing 34 n n 
C17 H5 A1D5A sing 35 n n 
C22 H6 A1D5A sing 36 n n 
C24 H7 A1D5A sing 37 n n 
C26 H8 A1D5A sing 38 n n 
C04 H9 A1D5A sing 39 n n 
C04 H10 A1D5A sing 40 n n 
C05 H11 A1D5A sing 41 n n 
C05 H12 A1D5A sing 42 n n 
C06 H13 A1D5A sing 43 n n 
C06 H14 A1D5A sing 44 n n 
C07 H15 A1D5A sing 45 n n 
C08 H17 A1D5A sing 46 n n 
C09 H19 A1D5A sing 47 n n 
C09 H20 A1D5A sing 48 n n 
C11 H21 A1D5A sing 49 n n 
C14 H22 A1D5A sing 50 n n 
C16 H23 A1D5A sing 51 n n 
C18 H24 A1D5A sing 52 n n 
C19 H25 A1D5A sing 53 n n 
C19 H26 A1D5A sing 54 n n 
C23 H27 A1D5A sing 55 n n 
O03 H28 A1D5A sing 56 n n 
O12 H29 A1D5A sing 57 n n 
O28 H30 A1D5A sing 58 n n 
O29 H31 A1D5A sing 59 n n 
#
_atom_sites.entry_id                     8XJN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           A1D5A 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      601 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       A1D5A 
_pdbx_nonpoly_scheme.auth_mon_id      LIG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 A1D5A . . . F 6 89.356 122.847 122.331 1 91.04 ? C10 A1D5A 601 R 1 
HETATM 2 C C13 A1D5A . . . F 6 87.922 121.138 122.925 1 90.53 ? C13 A1D5A 601 R 1 
HETATM 3 C C15 A1D5A . . . F 6 89.181 121.748 121.054 1 93.08 ? C15 A1D5A 601 R 1 
HETATM 4 C C17 A1D5A . . . F 6 90.65 120.654 119.35 1 90.3 ? C17 A1D5A 601 R 1 
HETATM 5 C C21 A1D5A . . . F 6 93.953 122.938 117.596 1 92.01 ? C21 A1D5A 601 R 1 
HETATM 6 C C22 A1D5A . . . F 6 92.747 123.512 117.208 1 93.51 ? C22 A1D5A 601 R 1 
HETATM 7 C C24 A1D5A . . . F 6 93.916 125.494 116.501 1 92.16 ? C24 A1D5A 601 R 1 
HETATM 8 C C26 A1D5A . . . F 6 95.139 123.647 117.438 1 91.75 ? C26 A1D5A 601 R 1 
HETATM 9 C C02 A1D5A . . . F 6 86.316 127.093 126.232 1 98.27 ? C02 A1D5A 601 R 1 
HETATM 10 C C04 A1D5A . . . F 6 87.545 127.284 125.322 1 95.64 ? C04 A1D5A 601 R 1 
HETATM 11 C C05 A1D5A . . . F 6 87.737 126.105 124.341 1 91.99 ? C05 A1D5A 601 R 1 
HETATM 12 C C06 A1D5A . . . F 6 88.564 126.509 123.097 1 92.21 ? C06 A1D5A 601 R 1 
HETATM 13 C C07 A1D5A . . . F 6 90.059 126.176 123.34 1 93.7 ? C07 A1D5A 601 R 1 
HETATM 14 C C08 A1D5A . . . F 6 90.498 125.079 122.689 1 92.16 ? C08 A1D5A 601 R 1 
HETATM 15 C C09 A1D5A . . . F 6 89.496 124.301 121.793 1 90.55 ? C09 A1D5A 601 R 1 
HETATM 16 C C11 A1D5A . . . F 6 88.251 122.717 123.025 1 92.57 ? C11 A1D5A 601 R 1 
HETATM 17 C C14 A1D5A . . . F 6 88.64 120.651 121.597 1 93.18 ? C14 A1D5A 601 R 1 
HETATM 18 C C16 A1D5A . . . F 6 90.557 121.424 120.444 1 94.64 ? C16 A1D5A 601 R 1 
HETATM 19 C C18 A1D5A . . . F 6 92.031 120.341 118.754 1 90.31 ? C18 A1D5A 601 R 1 
HETATM 20 C C19 A1D5A . . . F 6 93.025 121.428 119.192 1 93.34 ? C19 A1D5A 601 R 1 
HETATM 21 C C23 A1D5A . . . F 6 92.729 124.789 116.66 1 94.51 ? C23 A1D5A 601 R 1 
HETATM 22 C C25 A1D5A . . . F 6 95.12 124.924 116.889 1 90.99 ? C25 A1D5A 601 R 1 
HETATM 23 O O01 A1D5A . . . F 6 85.156 127.283 125.772 1 98.7 ? O01 A1D5A 601 R 1 
HETATM 24 O O03 A1D5A . . . F 6 86.47 126.749 127.437 1 97.12 ? O03 A1D5A 601 R 1 
HETATM 25 O O12 A1D5A . . . F 6 87.18 123.485 122.411 1 94.62 ? O12 A1D5A 601 R 1 
HETATM 26 O O20 A1D5A . . . F 6 93.974 121.631 118.156 1 93.92 ? O20 A1D5A 601 R 1 
HETATM 27 O O28 A1D5A . . . F 6 91.945 120.318 117.363 1 90.5 ? O28 A1D5A 601 R 1 
HETATM 28 O O29 A1D5A . . . F 6 87.657 120.068 120.689 1 96.29 ? O29 A1D5A 601 R 1 
HETATM 29 CL CL27 A1D5A . . . F 6 96.642 125.84 116.682 1 98.66 ? CL27 A1D5A 601 R 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#