data_8XJO
#
_model_server_result.job_id            gf1a1OWYezAGBb5L2DKIKg 
_model_server_result.datetime_utc      '2025-03-12 03:19:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xjo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    8XJO 
#
_exptl.entry_id    8XJO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              350.492 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(5Z)-7-{(1R,4S,5S,6R)-6-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-2-oxabicyclo[2.2.1]hept-5-yl}hept-5-enoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8XJO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8XJO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 22 E CYS 22 1_555 D SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 D SG CYS 159 E CYS 159 1_555 D SG CYS 229 E CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 E SG CYS 64 R CYS 11 1_555 E SG CYS 155 R CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 E SG CYS 158 R CYS 105 1_555 E SG CYS 236 R CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C21 H34 O4' 
_chem_comp.formula_weight    350.492 
_chem_comp.id                PUC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(5Z)-7-{(1R,4S,5S,6R)-6-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-2-oxabicyclo[2.2.1]hept-5-yl}hept-5-enoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '15-Hydroxy-11 alpha,9 alpha-(epoxymethano)prosta-5,13-dienoic Acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PUC doub 275 n n 
C1 C2 PUC sing 276 n n 
C1 O2 PUC sing 277 n n 
C2 C3 PUC sing 278 n n 
C2 H12 PUC sing 279 n n 
C2 H22 PUC sing 280 n n 
O2 H1O2 PUC sing 281 n n 
C3 C4 PUC sing 282 n n 
C3 H13 PUC sing 283 n n 
C3 H23 PUC sing 284 n n 
O3 C15 PUC sing 285 n n 
O3 H2O3 PUC sing 286 n n 
C4 C5 PUC sing 287 n n 
C4 H14 PUC sing 288 n n 
C4 H24 PUC sing 289 n n 
C5 C6 PUC doub 290 z n 
C5 H15 PUC sing 291 n n 
O5 C11 PUC sing 292 n n 
O5 C21 PUC sing 293 n n 
C6 C7 PUC sing 294 n n 
C6 H16 PUC sing 295 n n 
C7 C8 PUC sing 296 n n 
C7 H17 PUC sing 297 n n 
C7 H27 PUC sing 298 n n 
C8 C9 PUC sing 299 n n 
C8 C12 PUC sing 300 n n 
C8 H18 PUC sing 301 n n 
C9 C10 PUC sing 302 n n 
C9 C21 PUC sing 303 n n 
C9 H19 PUC sing 304 n n 
C10 C11 PUC sing 305 n n 
C10 H110 PUC sing 306 n n 
C10 H210 PUC sing 307 n n 
C11 C12 PUC sing 308 n n 
C11 H111 PUC sing 309 n n 
C12 C13 PUC sing 310 n n 
C12 H112 PUC sing 311 n n 
C13 C14 PUC doub 312 e n 
C13 H113 PUC sing 313 n n 
C14 C15 PUC sing 314 n n 
C14 H114 PUC sing 315 n n 
C15 C16 PUC sing 316 n n 
C15 H115 PUC sing 317 n n 
C16 C17 PUC sing 318 n n 
C16 H116 PUC sing 319 n n 
C16 H216 PUC sing 320 n n 
C17 C18 PUC sing 321 n n 
C17 H117 PUC sing 322 n n 
C17 H217 PUC sing 323 n n 
C18 C19 PUC sing 324 n n 
C18 H118 PUC sing 325 n n 
C18 H218 PUC sing 326 n n 
C19 C20 PUC sing 327 n n 
C19 H119 PUC sing 328 n n 
C19 H219 PUC sing 329 n n 
C20 H120 PUC sing 330 n n 
C20 H220 PUC sing 331 n n 
C20 H320 PUC sing 332 n n 
C21 H121 PUC sing 333 n n 
C21 H221 PUC sing 334 n n 
#
_atom_sites.entry_id                     8XJO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           PUC 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      601 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       PUC 
_pdbx_nonpoly_scheme.auth_mon_id      LIG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PUC . . . F 6 91.649 130.788 125.402 1 92.68 ? C1 PUC 601 R 1 
HETATM 2 O O1 PUC . . . F 6 90.417 130.801 125.31 1 94.32 ? O1 PUC 601 R 1 
HETATM 3 C C2 PUC . . . F 6 92.502 130.761 124.043 1 86.14 ? C2 PUC 601 R 1 
HETATM 4 O O2 PUC . . . F 6 92.285 130.794 126.464 1 89.79 ? O2 PUC 601 R 1 
HETATM 5 C C3 PUC . . . F 6 93.316 129.474 123.778 1 83.97 ? C3 PUC 601 R 1 
HETATM 6 O O3 PUC . . . F 6 95.591 123.479 116.596 1 86.56 ? O3 PUC 601 R 1 
HETATM 7 C C4 PUC . . . F 6 94.386 129.551 122.658 1 85.76 ? C4 PUC 601 R 1 
HETATM 8 C C5 PUC . . . F 6 95.556 128.609 122.642 1 88.86 ? C5 PUC 601 R 1 
HETATM 9 O O5 PUC . . . F 6 91.853 125.073 121.081 1 87.74 ? O5 PUC 601 R 1 
HETATM 10 C C6 PUC . . . F 6 95.678 127.482 121.942 1 84.32 ? C6 PUC 601 R 1 
HETATM 11 C C7 PUC . . . F 6 94.612 127.002 121.036 1 79.71 ? C7 PUC 601 R 1 
HETATM 12 C C8 PUC . . . F 6 94.607 125.465 120.941 1 84.99 ? C8 PUC 601 R 1 
HETATM 13 C C9 PUC . . . F 6 93.928 124.845 122.175 1 83.52 ? C9 PUC 601 R 1 
HETATM 14 C C10 PUC . . . F 6 93.459 123.469 121.534 1 85.38 ? C10 PUC 601 R 1 
HETATM 15 C C11 PUC . . . F 6 92.628 124.15 120.371 1 84.17 ? C11 PUC 601 R 1 
HETATM 16 C C12 PUC . . . F 6 93.764 125.002 119.804 1 86.7 ? C12 PUC 601 R 1 
HETATM 17 C C13 PUC . . . F 6 94.631 124.169 118.897 1 85.82 ? C13 PUC 601 R 1 
HETATM 18 C C14 PUC . . . F 6 95.774 124.603 118.454 1 84.71 ? C14 PUC 601 R 1 
HETATM 19 C C15 PUC . . . F 6 96.596 123.714 117.549 1 81.58 ? C15 PUC 601 R 1 
HETATM 20 C C16 PUC . . . F 6 97.892 124.203 116.898 1 77.19 ? C16 PUC 601 R 1 
HETATM 21 C C17 PUC . . . F 6 97.936 125.699 116.52 1 77.08 ? C17 PUC 601 R 1 
HETATM 22 C C18 PUC . . . F 6 99.323 126.263 116.11 1 79.52 ? C18 PUC 601 R 1 
HETATM 23 C C19 PUC . . . F 6 99.356 127.632 115.387 1 80.34 ? C19 PUC 601 R 1 
HETATM 24 C C20 PUC . . . F 6 100.735 128.062 114.853 1 80.38 ? C20 PUC 601 R 1 
HETATM 25 C C21 PUC . . . F 6 92.517 125.455 122.248 1 83.92 ? C21 PUC 601 R 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           25 
#