data_8XKP # _model_server_result.job_id TToIWsjO92NfD-t_qIOk6w _model_server_result.datetime_utc '2025-01-10 15:55:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xkp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 8XKP # _exptl.entry_id 8XKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 488.585 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-[[(1R,2S)-2-azanylcyclohexyl]amino]-5-[[3-[(2S,6R)-2,6-dimethylmorpholin-4-yl]phenyl]amino]-4-oxidanylidene-3H-pyrido[3,4-d]pyridazine-8-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8XKP _cell.length_a 80.651 _cell.length_b 80.651 _cell.length_c 131.207 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H32 N8 O2' _chem_comp.formula_weight 488.585 _chem_comp.id A1LWS _chem_comp.mon_nstd_flag . _chem_comp.name 7-[[(1R,2S)-2-azanylcyclohexyl]amino]-5-[[3-[(2S,6R)-2,6-dimethylmorpholin-4-yl]phenyl]amino]-4-oxidanylidene-3H-pyrido[3,4-d]pyridazine-8-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C23 A1LWS sing 1 n n C23 C19 A1LWS sing 2 n n C23 O36 A1LWS sing 3 n n C19 N31 A1LWS sing 4 n n O36 C24 A1LWS sing 5 n n C3 C2 A1LWS doub 6 n y C3 C9 A1LWS sing 7 n y N31 C9 A1LWS sing 8 n n N31 C20 A1LWS sing 9 n n C24 C26 A1LWS sing 10 n n C24 C20 A1LWS sing 11 n n C2 C4 A1LWS sing 12 n y C9 C5 A1LWS doub 13 n y C17 C15 A1LWS sing 14 n n C17 C21 A1LWS sing 15 n n C15 C16 A1LWS sing 16 n n C4 C10 A1LWS doub 17 n y C5 C10 A1LWS sing 18 n y C10 N33 A1LWS sing 19 n n C16 C18 A1LWS sing 20 n n C21 N32 A1LWS sing 21 n n C21 C22 A1LWS sing 22 n n N33 C12 A1LWS sing 23 n n C22 C18 A1LWS sing 24 n n C22 N34 A1LWS sing 25 n n N28 C12 A1LWS doub 26 n y N28 C11 A1LWS sing 27 n y C12 C8 A1LWS sing 28 n y N34 C11 A1LWS sing 29 n n O35 C14 A1LWS doub 30 n n C11 C6 A1LWS doub 31 n y C8 C14 A1LWS sing 32 n n C8 C7 A1LWS doub 33 n y C14 N30 A1LWS sing 34 n n C6 C7 A1LWS sing 35 n y C6 C1 A1LWS sing 36 n n C7 C13 A1LWS sing 37 n n N30 N29 A1LWS sing 38 n n C1 N27 A1LWS trip 39 n n C13 N29 A1LWS doub 40 n n C4 H1 A1LWS sing 41 n n C5 H2 A1LWS sing 42 n n C3 H3 A1LWS sing 43 n n C2 H4 A1LWS sing 44 n n C13 H5 A1LWS sing 45 n n C15 H6 A1LWS sing 46 n n C15 H7 A1LWS sing 47 n n C16 H8 A1LWS sing 48 n n C16 H9 A1LWS sing 49 n n C17 H10 A1LWS sing 50 n n C17 H11 A1LWS sing 51 n n C18 H12 A1LWS sing 52 n n C18 H13 A1LWS sing 53 n n C19 H14 A1LWS sing 54 n n C19 H15 A1LWS sing 55 n n C20 H16 A1LWS sing 56 n n C20 H17 A1LWS sing 57 n n C21 H18 A1LWS sing 58 n n C22 H19 A1LWS sing 59 n n C23 H20 A1LWS sing 60 n n C24 H21 A1LWS sing 61 n n C25 H22 A1LWS sing 62 n n C25 H23 A1LWS sing 63 n n C25 H24 A1LWS sing 64 n n C26 H25 A1LWS sing 65 n n C26 H26 A1LWS sing 66 n n C26 H27 A1LWS sing 67 n n N30 H28 A1LWS sing 68 n n N32 H29 A1LWS sing 69 n n N32 H30 A1LWS sing 70 n n N33 H32 A1LWS sing 71 n n N34 H33 A1LWS sing 72 n n # _atom_sites.entry_id 8XKP _atom_sites.fract_transf_matrix[1][1] 0.012399 _atom_sites.fract_transf_matrix[1][2] 0.007159 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014317 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 901 901 SO4 SO4 . C 2 SO4 A 1 902 902 SO4 SO4 . D 3 A1LWS A 1 903 1 A1LWS DSJ . E 4 HOH A 1 1001 58 HOH HOH . E 4 HOH A 2 1002 66 HOH HOH . E 4 HOH A 3 1003 91 HOH HOH . E 4 HOH A 4 1004 74 HOH HOH . E 4 HOH A 5 1005 52 HOH HOH . E 4 HOH A 6 1006 109 HOH HOH . E 4 HOH A 7 1007 102 HOH HOH . E 4 HOH A 8 1008 110 HOH HOH . E 4 HOH A 9 1009 42 HOH HOH . E 4 HOH A 10 1010 71 HOH HOH . E 4 HOH A 11 1011 6 HOH HOH . E 4 HOH A 12 1012 116 HOH HOH . E 4 HOH A 13 1013 97 HOH HOH . E 4 HOH A 14 1014 112 HOH HOH . E 4 HOH A 15 1015 98 HOH HOH . E 4 HOH A 16 1016 39 HOH HOH . E 4 HOH A 17 1017 3 HOH HOH . E 4 HOH A 18 1018 36 HOH HOH . E 4 HOH A 19 1019 88 HOH HOH . E 4 HOH A 20 1020 1 HOH HOH . E 4 HOH A 21 1021 7 HOH HOH . E 4 HOH A 22 1022 12 HOH HOH . E 4 HOH A 23 1023 11 HOH HOH . E 4 HOH A 24 1024 2 HOH HOH . E 4 HOH A 25 1025 26 HOH HOH . E 4 HOH A 26 1026 22 HOH HOH . E 4 HOH A 27 1027 114 HOH HOH . E 4 HOH A 28 1028 117 HOH HOH . E 4 HOH A 29 1029 67 HOH HOH . E 4 HOH A 30 1030 5 HOH HOH . E 4 HOH A 31 1031 54 HOH HOH . E 4 HOH A 32 1032 4 HOH HOH . E 4 HOH A 33 1033 84 HOH HOH . E 4 HOH A 34 1034 76 HOH HOH . E 4 HOH A 35 1035 8 HOH HOH . E 4 HOH A 36 1036 16 HOH HOH . E 4 HOH A 37 1037 51 HOH HOH . E 4 HOH A 38 1038 79 HOH HOH . E 4 HOH A 39 1039 28 HOH HOH . E 4 HOH A 40 1040 32 HOH HOH . E 4 HOH A 41 1041 78 HOH HOH . E 4 HOH A 42 1042 15 HOH HOH . E 4 HOH A 43 1043 64 HOH HOH . E 4 HOH A 44 1044 31 HOH HOH . E 4 HOH A 45 1045 17 HOH HOH . E 4 HOH A 46 1046 35 HOH HOH . E 4 HOH A 47 1047 81 HOH HOH . E 4 HOH A 48 1048 23 HOH HOH . E 4 HOH A 49 1049 45 HOH HOH . E 4 HOH A 50 1050 95 HOH HOH . E 4 HOH A 51 1051 30 HOH HOH . E 4 HOH A 52 1052 43 HOH HOH . E 4 HOH A 53 1053 38 HOH HOH . E 4 HOH A 54 1054 27 HOH HOH . E 4 HOH A 55 1055 37 HOH HOH . E 4 HOH A 56 1056 85 HOH HOH . E 4 HOH A 57 1057 10 HOH HOH . E 4 HOH A 58 1058 96 HOH HOH . E 4 HOH A 59 1059 101 HOH HOH . E 4 HOH A 60 1060 49 HOH HOH . E 4 HOH A 61 1061 19 HOH HOH . E 4 HOH A 62 1062 63 HOH HOH . E 4 HOH A 63 1063 86 HOH HOH . E 4 HOH A 64 1064 21 HOH HOH . E 4 HOH A 65 1065 48 HOH HOH . E 4 HOH A 66 1066 14 HOH HOH . E 4 HOH A 67 1067 105 HOH HOH . E 4 HOH A 68 1068 73 HOH HOH . E 4 HOH A 69 1069 47 HOH HOH . E 4 HOH A 70 1070 29 HOH HOH . E 4 HOH A 71 1071 68 HOH HOH . E 4 HOH A 72 1072 25 HOH HOH . E 4 HOH A 73 1073 65 HOH HOH . E 4 HOH A 74 1074 82 HOH HOH . E 4 HOH A 75 1075 13 HOH HOH . E 4 HOH A 76 1076 9 HOH HOH . E 4 HOH A 77 1077 57 HOH HOH . E 4 HOH A 78 1078 70 HOH HOH . E 4 HOH A 79 1079 34 HOH HOH . E 4 HOH A 80 1080 18 HOH HOH . E 4 HOH A 81 1081 94 HOH HOH . E 4 HOH A 82 1082 50 HOH HOH . E 4 HOH A 83 1083 107 HOH HOH . E 4 HOH A 84 1084 55 HOH HOH . E 4 HOH A 85 1085 40 HOH HOH . E 4 HOH A 86 1086 20 HOH HOH . E 4 HOH A 87 1087 41 HOH HOH . E 4 HOH A 88 1088 104 HOH HOH . E 4 HOH A 89 1089 24 HOH HOH . E 4 HOH A 90 1090 119 HOH HOH . E 4 HOH A 91 1091 33 HOH HOH . E 4 HOH A 92 1092 87 HOH HOH . E 4 HOH A 93 1093 90 HOH HOH . E 4 HOH A 94 1094 93 HOH HOH . E 4 HOH A 95 1095 80 HOH HOH . E 4 HOH A 96 1096 99 HOH HOH . E 4 HOH A 97 1097 113 HOH HOH . E 4 HOH A 98 1098 92 HOH HOH . E 4 HOH A 99 1099 115 HOH HOH . E 4 HOH A 100 1100 106 HOH HOH . E 4 HOH A 101 1101 103 HOH HOH . E 4 HOH A 102 1102 60 HOH HOH . E 4 HOH A 103 1103 61 HOH HOH . E 4 HOH A 104 1104 46 HOH HOH . E 4 HOH A 105 1105 100 HOH HOH . E 4 HOH A 106 1106 69 HOH HOH . E 4 HOH A 107 1107 53 HOH HOH . E 4 HOH A 108 1108 108 HOH HOH . E 4 HOH A 109 1109 62 HOH HOH . E 4 HOH A 110 1110 77 HOH HOH . E 4 HOH A 111 1111 72 HOH HOH . E 4 HOH A 112 1112 75 HOH HOH . E 4 HOH A 113 1113 83 HOH HOH . E 4 HOH A 114 1114 89 HOH HOH . E 4 HOH A 115 1115 56 HOH HOH . E 4 HOH A 116 1116 44 HOH HOH . E 4 HOH A 117 1117 59 HOH HOH . E 4 HOH A 118 1118 118 HOH HOH . E 4 HOH A 119 1119 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 A1LWS . . . D 3 -18.228 -25.542 10.58 1 32.09 ? C7 A1LWS 903 A 1 HETATM 2 C C4 A1LWS . . . D 3 -19.511 -27.062 5.621 1 30.66 ? C4 A1LWS 903 A 1 HETATM 3 C C5 A1LWS . . . D 3 -21.537 -25.815 5.625 1 29 ? C5 A1LWS 903 A 1 HETATM 4 C C6 A1LWS . . . D 3 -17.422 -26.653 10.375 1 29.96 ? C6 A1LWS 903 A 1 HETATM 5 C C3 A1LWS . . . D 3 -21.049 -27.224 3.773 1 33.41 ? C3 A1LWS 903 A 1 HETATM 6 C C2 A1LWS . . . D 3 -19.856 -27.576 4.383 1 35.31 ? C2 A1LWS 903 A 1 HETATM 7 C C1 A1LWS . . . D 3 -16.457 -26.97 11.372 1 31.72 ? C1 A1LWS 903 A 1 HETATM 8 C C8 A1LWS . . . D 3 -19.158 -25.175 9.628 1 29.03 ? C8 A1LWS 903 A 1 HETATM 9 C C9 A1LWS . . . D 3 -21.901 -26.329 4.401 1 35.47 ? C9 A1LWS 903 A 1 HETATM 10 C C10 A1LWS . . . D 3 -20.365 -26.175 6.252 1 30.94 ? C10 A1LWS 903 A 1 HETATM 11 C C11 A1LWS . . . D 3 -17.566 -27.368 9.199 1 31.36 ? C11 A1LWS 903 A 1 HETATM 12 C C12 A1LWS . . . D 3 -19.249 -25.941 8.472 1 30.15 ? C12 A1LWS 903 A 1 HETATM 13 C C13 A1LWS . . . D 3 -18.08 -24.758 11.813 1 28.01 ? C13 A1LWS 903 A 1 HETATM 14 C C14 A1LWS . . . D 3 -19.992 -23.98 9.885 1 30.84 ? C14 A1LWS 903 A 1 HETATM 15 C C15 A1LWS . . . D 3 -15.758 -30.781 5.46 1 30.41 ? C15 A1LWS 903 A 1 HETATM 16 C C16 A1LWS . . . D 3 -16.53 -31.473 6.572 1 28.92 ? C16 A1LWS 903 A 1 HETATM 17 C C17 A1LWS . . . D 3 -16.212 -29.332 5.325 1 26.89 ? C17 A1LWS 903 A 1 HETATM 18 C C18 A1LWS . . . D 3 -16.464 -30.657 7.869 1 28.63 ? C18 A1LWS 903 A 1 HETATM 19 C C19 A1LWS . . . D 3 -23.584 -26.594 2.644 1 43.47 ? C19 A1LWS 903 A 1 HETATM 20 C C20 A1LWS . . . D 3 -24.049 -25.21 4.724 1 40.76 ? C20 A1LWS 903 A 1 HETATM 21 C C21 A1LWS . . . D 3 -16.052 -28.55 6.616 1 28.24 ? C21 A1LWS 903 A 1 HETATM 22 C C22 A1LWS . . . D 3 -16.889 -29.185 7.716 1 29.69 ? C22 A1LWS 903 A 1 HETATM 23 C C23 A1LWS . . . D 3 -24.816 -25.9 2.07 1 47.05 ? C23 A1LWS 903 A 1 HETATM 24 C C24 A1LWS . . . D 3 -25.117 -24.571 3.844 1 49.14 ? C24 A1LWS 903 A 1 HETATM 25 C C25 A1LWS . . . D 3 -25.435 -26.778 1.014 1 53.47 ? C25 A1LWS 903 A 1 HETATM 26 C C26 A1LWS . . . D 3 -26.104 -23.743 4.62 1 45.99 ? C26 A1LWS 903 A 1 HETATM 27 N N27 A1LWS . . . D 3 -15.64 -27.153 12.182 1 31.8 ? N27 A1LWS 903 A 1 HETATM 28 N N28 A1LWS . . . D 3 -18.475 -27.013 8.258 1 29.93 ? N28 A1LWS 903 A 1 HETATM 29 N N29 A1LWS . . . D 3 -18.822 -23.724 12.031 1 32.66 ? N29 A1LWS 903 A 1 HETATM 30 N N30 A1LWS . . . D 3 -19.753 -23.391 11.096 1 26.05 ? N30 A1LWS 903 A 1 HETATM 31 N N31 A1LWS . . . D 3 -23.116 -25.888 3.83 1 37.72 ? N31 A1LWS 903 A 1 HETATM 32 N N32 A1LWS . . . D 3 -14.626 -28.451 6.969 1 27.69 ? N32 A1LWS 903 A 1 HETATM 33 N N33 A1LWS . . . D 3 -20.17 -25.576 7.501 1 27.91 ? N33 A1LWS 903 A 1 HETATM 34 N N34 A1LWS . . . D 3 -16.721 -28.483 9.016 1 28.26 ? N34 A1LWS 903 A 1 HETATM 35 O O35 A1LWS . . . D 3 -20.836 -23.568 9.08 1 28.02 ? O35 A1LWS 903 A 1 HETATM 36 O O36 A1LWS . . . D 3 -25.749 -25.636 3.136 1 45.23 ? O36 A1LWS 903 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #