data_8XKS
#
_model_server_result.job_id            QHzuH7KdtDQ_sMu7o-tpXA 
_model_server_result.datetime_utc      '2024-12-27 15:19:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xks 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":301}' 
#
_entry.id    8XKS 
#
_exptl.entry_id    8XKS 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              787.158 
_entity.id                          23 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 23 Y N N 
? 23 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 P SG CYS 200 P CYS 136 1_555 P SG CYS 253 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
covale ? covale1 R C ASP 71 R ASP 43 1_555 R N SEP 72 R SEP 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 R C SEP 72 R SEP 44 1_555 R N LEU 73 R LEU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
metalc ? metalc1 C SG CYS 58 C CYS 58 1_555 U ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc2 C SG CYS 61 C CYS 61 1_555 U ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc3 C SG CYS 69 C CYS 69 1_555 V ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc4 C SG CYS 72 C CYS 72 1_555 V ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc5 C SG CYS 113 C CYS 113 1_555 V ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc6 C SG CYS 116 C CYS 116 1_555 V ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc7 C SG CYS 306 C CYS 306 1_555 U ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc8 C SG CYS 309 C CYS 309 1_555 U ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
#
_chem_comp.formula           'C45 H86 O10' 
_chem_comp.formula_weight    787.158 
_chem_comp.id                LMG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 LMG sing 527 n n 
C1 C2 LMG sing 528 n n 
C1 O6 LMG sing 529 n n 
C1 HC1 LMG sing 530 n n 
O1 C7 LMG sing 531 n n 
C2 O2 LMG sing 532 n n 
C2 C3 LMG sing 533 n n 
C2 HC2 LMG sing 534 n n 
O2 HO2 LMG sing 535 n n 
C3 O3 LMG sing 536 n n 
C3 C4 LMG sing 537 n n 
C3 HC3 LMG sing 538 n n 
O3 HO3 LMG sing 539 n n 
C4 O4 LMG sing 540 n n 
C4 C5 LMG sing 541 n n 
C4 HC4 LMG sing 542 n n 
O4 HO4 LMG sing 543 n n 
C5 C6 LMG sing 544 n n 
C5 O6 LMG sing 545 n n 
C5 HC5 LMG sing 546 n n 
O5 C6 LMG sing 547 n n 
O5 HO5 LMG sing 548 n n 
C6 HC61 LMG sing 549 n n 
C6 HC62 LMG sing 550 n n 
C7 C8 LMG sing 551 n n 
C7 HC71 LMG sing 552 n n 
C7 HC72 LMG sing 553 n n 
C8 C9 LMG sing 554 n n 
C8 O7 LMG sing 555 n n 
C8 HC8 LMG sing 556 n n 
C9 O8 LMG sing 557 n n 
C9 HC91 LMG sing 558 n n 
C9 HC92 LMG sing 559 n n 
O7 C10 LMG sing 560 n n 
C10 O9 LMG doub 561 n n 
C10 C11 LMG sing 562 n n 
C11 C12 LMG sing 563 n n 
C11 H111 LMG sing 564 n n 
C11 H112 LMG sing 565 n n 
C12 C13 LMG sing 566 n n 
C12 H121 LMG sing 567 n n 
C12 H122 LMG sing 568 n n 
C13 C14 LMG sing 569 n n 
C13 H131 LMG sing 570 n n 
C13 H132 LMG sing 571 n n 
C14 C15 LMG sing 572 n n 
C14 H141 LMG sing 573 n n 
C14 H142 LMG sing 574 n n 
C15 C16 LMG sing 575 n n 
C15 H151 LMG sing 576 n n 
C15 H152 LMG sing 577 n n 
C16 C17 LMG sing 578 n n 
C16 H161 LMG sing 579 n n 
C16 H162 LMG sing 580 n n 
C17 C18 LMG sing 581 n n 
C17 H171 LMG sing 582 n n 
C17 H172 LMG sing 583 n n 
C18 C19 LMG sing 584 n n 
C18 H181 LMG sing 585 n n 
C18 H182 LMG sing 586 n n 
C19 C20 LMG sing 587 n n 
C19 H191 LMG sing 588 n n 
C19 H192 LMG sing 589 n n 
C20 C21 LMG sing 590 n n 
C20 H201 LMG sing 591 n n 
C20 H202 LMG sing 592 n n 
C21 C22 LMG sing 593 n n 
C21 H211 LMG sing 594 n n 
C21 H212 LMG sing 595 n n 
C22 C23 LMG sing 596 n n 
C22 H221 LMG sing 597 n n 
C22 H222 LMG sing 598 n n 
C23 C24 LMG sing 599 n n 
C23 H231 LMG sing 600 n n 
C23 H232 LMG sing 601 n n 
C24 C25 LMG sing 602 n n 
C24 H241 LMG sing 603 n n 
C24 H242 LMG sing 604 n n 
C25 C26 LMG sing 605 n n 
C25 H251 LMG sing 606 n n 
C25 H252 LMG sing 607 n n 
C26 C27 LMG sing 608 n n 
C26 H261 LMG sing 609 n n 
C26 H262 LMG sing 610 n n 
C27 H271 LMG sing 611 n n 
C27 H272 LMG sing 612 n n 
C27 H273 LMG sing 613 n n 
O8 C28 LMG sing 614 n n 
C28 O10 LMG doub 615 n n 
C28 C29 LMG sing 616 n n 
C29 C30 LMG sing 617 n n 
C29 H291 LMG sing 618 n n 
C29 H292 LMG sing 619 n n 
C30 C31 LMG sing 620 n n 
C30 H301 LMG sing 621 n n 
C30 H302 LMG sing 622 n n 
C31 C32 LMG sing 623 n n 
C31 H311 LMG sing 624 n n 
C31 H312 LMG sing 625 n n 
C32 C33 LMG sing 626 n n 
C32 H321 LMG sing 627 n n 
C32 H322 LMG sing 628 n n 
C33 C34 LMG sing 629 n n 
C33 H331 LMG sing 630 n n 
C33 H332 LMG sing 631 n n 
C34 C35 LMG sing 632 n n 
C34 H341 LMG sing 633 n n 
C34 H342 LMG sing 634 n n 
C35 C36 LMG sing 635 n n 
C35 H351 LMG sing 636 n n 
C35 H352 LMG sing 637 n n 
C36 C37 LMG sing 638 n n 
C36 H361 LMG sing 639 n n 
C36 H362 LMG sing 640 n n 
C37 C38 LMG sing 641 n n 
C37 H371 LMG sing 642 n n 
C37 H372 LMG sing 643 n n 
C38 C39 LMG sing 644 n n 
C38 H381 LMG sing 645 n n 
C38 H382 LMG sing 646 n n 
C39 C40 LMG sing 647 n n 
C39 H391 LMG sing 648 n n 
C39 H392 LMG sing 649 n n 
C40 C41 LMG sing 650 n n 
C40 H401 LMG sing 651 n n 
C40 H402 LMG sing 652 n n 
C41 C42 LMG sing 653 n n 
C41 H411 LMG sing 654 n n 
C41 H412 LMG sing 655 n n 
C42 C43 LMG sing 656 n n 
C42 H421 LMG sing 657 n n 
C42 H422 LMG sing 658 n n 
C43 C44 LMG sing 659 n n 
C43 H431 LMG sing 660 n n 
C43 H432 LMG sing 661 n n 
C44 C45 LMG sing 662 n n 
C44 H441 LMG sing 663 n n 
C44 H442 LMG sing 664 n n 
C45 H451 LMG sing 665 n n 
C45 H452 LMG sing 666 n n 
C45 H453 LMG sing 667 n n 
#
_atom_sites.entry_id                     8XKS 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 20 ZN C 1 501 501 ZN ZN . 
V 20 ZN C 1 502 502 ZN ZN . 
W 21 DGA H 1 701 701 DGA DGA . 
X 22 DGD J 1 401 401 DGD DGD . 
Y 23 LMG J 1 402 402 LMG LMG . 
Z 24 ACD K 1 501 501 ACD ACD . 
AA 23 LMG L 1 301 403 LMG LMG . 
BA 22 DGD L 1 302 301 DGD DGD . 
CA 25 SQD L 1 303 302 SQD SQD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LMG . . . AA 23 184.786 237.249 187.94 1 44.26 ? C1 LMG 301 L 1 
HETATM 2 O O1 LMG . . . AA 23 183.94 238.329 187.592 1 45.62 ? O1 LMG 301 L 1 
HETATM 3 C C2 LMG . . . AA 23 184.363 236.02 187.05 1 44.02 ? C2 LMG 301 L 1 
HETATM 4 O O2 LMG . . . AA 23 183.159 235.598 187.608 1 47.13 ? O2 LMG 301 L 1 
HETATM 5 C C3 LMG . . . AA 23 185.41 234.883 187.176 1 43.59 ? C3 LMG 301 L 1 
HETATM 6 O O3 LMG . . . AA 23 185.043 233.923 186.237 1 45.63 ? O3 LMG 301 L 1 
HETATM 7 C C4 LMG . . . AA 23 186.812 235.428 186.816 1 44.52 ? C4 LMG 301 L 1 
HETATM 8 O O4 LMG . . . AA 23 186.727 235.755 185.462 1 46.71 ? O4 LMG 301 L 1 
HETATM 9 C C5 LMG . . . AA 23 187.1 236.67 187.712 1 45.44 ? C5 LMG 301 L 1 
HETATM 10 O O5 LMG . . . AA 23 188.588 237.122 185.945 1 45.44 ? O5 LMG 301 L 1 
HETATM 11 C C6 LMG . . . AA 23 188.434 237.361 187.321 1 44.01 ? C6 LMG 301 L 1 
HETATM 12 O O6 LMG . . . AA 23 186.097 237.668 187.579 1 47.32 ? O6 LMG 301 L 1 
HETATM 13 C C7 LMG . . . AA 23 184.405 239.644 187.87 1 45.99 ? C7 LMG 301 L 1 
HETATM 14 C C8 LMG . . . AA 23 183.548 240.278 189.038 1 44.17 ? C8 LMG 301 L 1 
HETATM 15 C C9 LMG . . . AA 23 183.084 241.703 188.614 1 42.6 ? C9 LMG 301 L 1 
HETATM 16 O O7 LMG . . . AA 23 182.336 239.527 189.187 1 42.63 ? O7 LMG 301 L 1 
HETATM 17 C C10 LMG . . . AA 23 181.953 239.037 190.415 1 44.4 ? C10 LMG 301 L 1 
HETATM 18 O O9 LMG . . . AA 23 180.929 239.469 190.905 1 46.56 ? O9 LMG 301 L 1 
HETATM 19 C C11 LMG . . . AA 23 182.849 237.986 191.083 1 44.19 ? C11 LMG 301 L 1 
HETATM 20 C C12 LMG . . . AA 23 182.945 238.134 192.628 1 43.03 ? C12 LMG 301 L 1 
HETATM 21 C C13 LMG . . . AA 23 183.357 239.535 193.151 1 42.13 ? C13 LMG 301 L 1 
HETATM 22 C C14 LMG . . . AA 23 184.41 239.528 194.286 1 41.75 ? C14 LMG 301 L 1 
HETATM 23 C C15 LMG . . . AA 23 183.908 240.046 195.658 1 44.35 ? C15 LMG 301 L 1 
HETATM 24 C C16 LMG . . . AA 23 183.271 241.457 195.645 1 43.48 ? C16 LMG 301 L 1 
HETATM 25 C C17 LMG . . . AA 23 183.98 242.479 196.565 1 42.02 ? C17 LMG 301 L 1 
HETATM 26 C C18 LMG . . . AA 23 183.039 243.216 197.546 1 43.35 ? C18 LMG 301 L 1 
HETATM 27 C C19 LMG . . . AA 23 182.512 242.328 198.69 1 42.22 ? C19 LMG 301 L 1 
HETATM 28 C C20 LMG . . . AA 23 183.555 242.074 199.797 1 43.4 ? C20 LMG 301 L 1 
HETATM 29 C C21 LMG . . . AA 23 183.082 242.506 201.195 1 43.83 ? C21 LMG 301 L 1 
HETATM 30 C C22 LMG . . . AA 23 184.23 242.602 202.212 1 43.93 ? C22 LMG 301 L 1 
HETATM 31 C C23 LMG . . . AA 23 184.1 243.822 203.13 1 44.18 ? C23 LMG 301 L 1 
HETATM 32 C C24 LMG . . . AA 23 185.241 243.92 204.135 1 42.65 ? C24 LMG 301 L 1 
HETATM 33 O O8 LMG . . . AA 23 182.46 242.345 189.715 1 45.34 ? O8 LMG 301 L 1 
HETATM 34 C C28 LMG . . . AA 23 183.241 243.101 190.545 1 45.12 ? C28 LMG 301 L 1 
HETATM 35 O O10 LMG . . . AA 23 184.356 243.436 190.189 1 45.95 ? O10 LMG 301 L 1 
HETATM 36 C C29 LMG . . . AA 23 182.632 243.478 191.883 1 43.47 ? C29 LMG 301 L 1 
HETATM 37 C C30 LMG . . . AA 23 183.35 244.646 192.562 1 42.12 ? C30 LMG 301 L 1 
HETATM 38 C C31 LMG . . . AA 23 182.78 245.039 193.94 1 45.08 ? C31 LMG 301 L 1 
HETATM 39 C C32 LMG . . . AA 23 183.766 245.757 194.872 1 44.79 ? C32 LMG 301 L 1 
HETATM 40 C C33 LMG . . . AA 23 183.64 247.29 194.905 1 43.19 ? C33 LMG 301 L 1 
HETATM 41 C C34 LMG . . . AA 23 183.154 247.797 196.274 1 41.41 ? C34 LMG 301 L 1 
HETATM 42 C C35 LMG . . . AA 23 182.718 249.268 196.287 1 43.62 ? C35 LMG 301 L 1 
HETATM 43 C C36 LMG . . . AA 23 183.676 250.157 197.089 1 44 ? C36 LMG 301 L 1 
HETATM 44 C C37 LMG . . . AA 23 183.855 251.573 196.509 1 43.6 ? C37 LMG 301 L 1 
HETATM 45 C C38 LMG . . . AA 23 184.007 251.614 194.982 1 42.92 ? C38 LMG 301 L 1 
HETATM 46 C C39 LMG . . . AA 23 183.887 253.028 194.4 1 43.04 ? C39 LMG 301 L 1 
HETATM 47 C C40 LMG . . . AA 23 182.728 253.815 194.999 1 43.21 ? C40 LMG 301 L 1 
#
_model_server_stats.io_time_ms              38 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    119 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           47 
#