data_8XKS # _model_server_result.job_id KTHPPCuj0DEqgR573K10YQ _model_server_result.datetime_utc '2024-12-27 15:20:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xks # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":402}' # _entry.id 8XKS # _exptl.entry_id 8XKS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 787.158 _entity.id 23 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 23 Y N N ? 23 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 P SG CYS 200 P CYS 136 1_555 P SG CYS 253 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? covale ? covale1 R C ASP 71 R ASP 43 1_555 R N SEP 72 R SEP 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 R C SEP 72 R SEP 44 1_555 R N LEU 73 R LEU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 C SG CYS 58 C CYS 58 1_555 U ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc2 C SG CYS 61 C CYS 61 1_555 U ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc3 C SG CYS 69 C CYS 69 1_555 V ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc4 C SG CYS 72 C CYS 72 1_555 V ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc5 C SG CYS 113 C CYS 113 1_555 V ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc6 C SG CYS 116 C CYS 116 1_555 V ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc7 C SG CYS 306 C CYS 306 1_555 U ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc8 C SG CYS 309 C CYS 309 1_555 U ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? # _chem_comp.formula 'C45 H86 O10' _chem_comp.formula_weight 787.158 _chem_comp.id LMG _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 LMG sing 527 n n C1 C2 LMG sing 528 n n C1 O6 LMG sing 529 n n C1 HC1 LMG sing 530 n n O1 C7 LMG sing 531 n n C2 O2 LMG sing 532 n n C2 C3 LMG sing 533 n n C2 HC2 LMG sing 534 n n O2 HO2 LMG sing 535 n n C3 O3 LMG sing 536 n n C3 C4 LMG sing 537 n n C3 HC3 LMG sing 538 n n O3 HO3 LMG sing 539 n n C4 O4 LMG sing 540 n n C4 C5 LMG sing 541 n n C4 HC4 LMG sing 542 n n O4 HO4 LMG sing 543 n n C5 C6 LMG sing 544 n n C5 O6 LMG sing 545 n n C5 HC5 LMG sing 546 n n O5 C6 LMG sing 547 n n O5 HO5 LMG sing 548 n n C6 HC61 LMG sing 549 n n C6 HC62 LMG sing 550 n n C7 C8 LMG sing 551 n n C7 HC71 LMG sing 552 n n C7 HC72 LMG sing 553 n n C8 C9 LMG sing 554 n n C8 O7 LMG sing 555 n n C8 HC8 LMG sing 556 n n C9 O8 LMG sing 557 n n C9 HC91 LMG sing 558 n n C9 HC92 LMG sing 559 n n O7 C10 LMG sing 560 n n C10 O9 LMG doub 561 n n C10 C11 LMG sing 562 n n C11 C12 LMG sing 563 n n C11 H111 LMG sing 564 n n C11 H112 LMG sing 565 n n C12 C13 LMG sing 566 n n C12 H121 LMG sing 567 n n C12 H122 LMG sing 568 n n C13 C14 LMG sing 569 n n C13 H131 LMG sing 570 n n C13 H132 LMG sing 571 n n C14 C15 LMG sing 572 n n C14 H141 LMG sing 573 n n C14 H142 LMG sing 574 n n C15 C16 LMG sing 575 n n C15 H151 LMG sing 576 n n C15 H152 LMG sing 577 n n C16 C17 LMG sing 578 n n C16 H161 LMG sing 579 n n C16 H162 LMG sing 580 n n C17 C18 LMG sing 581 n n C17 H171 LMG sing 582 n n C17 H172 LMG sing 583 n n C18 C19 LMG sing 584 n n C18 H181 LMG sing 585 n n C18 H182 LMG sing 586 n n C19 C20 LMG sing 587 n n C19 H191 LMG sing 588 n n C19 H192 LMG sing 589 n n C20 C21 LMG sing 590 n n C20 H201 LMG sing 591 n n C20 H202 LMG sing 592 n n C21 C22 LMG sing 593 n n C21 H211 LMG sing 594 n n C21 H212 LMG sing 595 n n C22 C23 LMG sing 596 n n C22 H221 LMG sing 597 n n C22 H222 LMG sing 598 n n C23 C24 LMG sing 599 n n C23 H231 LMG sing 600 n n C23 H232 LMG sing 601 n n C24 C25 LMG sing 602 n n C24 H241 LMG sing 603 n n C24 H242 LMG sing 604 n n C25 C26 LMG sing 605 n n C25 H251 LMG sing 606 n n C25 H252 LMG sing 607 n n C26 C27 LMG sing 608 n n C26 H261 LMG sing 609 n n C26 H262 LMG sing 610 n n C27 H271 LMG sing 611 n n C27 H272 LMG sing 612 n n C27 H273 LMG sing 613 n n O8 C28 LMG sing 614 n n C28 O10 LMG doub 615 n n C28 C29 LMG sing 616 n n C29 C30 LMG sing 617 n n C29 H291 LMG sing 618 n n C29 H292 LMG sing 619 n n C30 C31 LMG sing 620 n n C30 H301 LMG sing 621 n n C30 H302 LMG sing 622 n n C31 C32 LMG sing 623 n n C31 H311 LMG sing 624 n n C31 H312 LMG sing 625 n n C32 C33 LMG sing 626 n n C32 H321 LMG sing 627 n n C32 H322 LMG sing 628 n n C33 C34 LMG sing 629 n n C33 H331 LMG sing 630 n n C33 H332 LMG sing 631 n n C34 C35 LMG sing 632 n n C34 H341 LMG sing 633 n n C34 H342 LMG sing 634 n n C35 C36 LMG sing 635 n n C35 H351 LMG sing 636 n n C35 H352 LMG sing 637 n n C36 C37 LMG sing 638 n n C36 H361 LMG sing 639 n n C36 H362 LMG sing 640 n n C37 C38 LMG sing 641 n n C37 H371 LMG sing 642 n n C37 H372 LMG sing 643 n n C38 C39 LMG sing 644 n n C38 H381 LMG sing 645 n n C38 H382 LMG sing 646 n n C39 C40 LMG sing 647 n n C39 H391 LMG sing 648 n n C39 H392 LMG sing 649 n n C40 C41 LMG sing 650 n n C40 H401 LMG sing 651 n n C40 H402 LMG sing 652 n n C41 C42 LMG sing 653 n n C41 H411 LMG sing 654 n n C41 H412 LMG sing 655 n n C42 C43 LMG sing 656 n n C42 H421 LMG sing 657 n n C42 H422 LMG sing 658 n n C43 C44 LMG sing 659 n n C43 H431 LMG sing 660 n n C43 H432 LMG sing 661 n n C44 C45 LMG sing 662 n n C44 H441 LMG sing 663 n n C44 H442 LMG sing 664 n n C45 H451 LMG sing 665 n n C45 H452 LMG sing 666 n n C45 H453 LMG sing 667 n n # _atom_sites.entry_id 8XKS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 20 ZN C 1 501 501 ZN ZN . V 20 ZN C 1 502 502 ZN ZN . W 21 DGA H 1 701 701 DGA DGA . X 22 DGD J 1 401 401 DGD DGD . Y 23 LMG J 1 402 402 LMG LMG . Z 24 ACD K 1 501 501 ACD ACD . AA 23 LMG L 1 301 403 LMG LMG . BA 22 DGD L 1 302 301 DGD DGD . CA 25 SQD L 1 303 302 SQD SQD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMG . . . Y 23 185.152 242.406 183.202 1 17.3 ? C1 LMG 402 J 1 HETATM 2 O O1 LMG . . . Y 23 184.8 243.46 184.071 1 29.45 ? O1 LMG 402 J 1 HETATM 3 C C2 LMG . . . Y 23 186.639 242.583 182.778 1 18.9 ? C2 LMG 402 J 1 HETATM 4 O O2 LMG . . . Y 23 186.592 243.688 181.938 1 23.39 ? O2 LMG 402 J 1 HETATM 5 C C3 LMG . . . Y 23 187.086 241.342 181.962 1 19.83 ? C3 LMG 402 J 1 HETATM 6 O O3 LMG . . . Y 23 188.453 241.485 181.76 1 30.23 ? O3 LMG 402 J 1 HETATM 7 C C4 LMG . . . Y 23 186.835 240.036 182.764 1 20.19 ? C4 LMG 402 J 1 HETATM 8 O O4 LMG . . . Y 23 187.792 240.048 183.779 1 27.55 ? O4 LMG 402 J 1 HETATM 9 C C5 LMG . . . Y 23 185.365 240.039 183.301 1 18.57 ? C5 LMG 402 J 1 HETATM 10 O O5 LMG . . . Y 23 186.095 237.942 184.079 1 25.13 ? O5 LMG 402 J 1 HETATM 11 C C6 LMG . . . Y 23 185.12 238.915 184.338 1 19.95 ? C6 LMG 402 J 1 HETATM 12 O O6 LMG . . . Y 23 185.04 241.236 183.986 1 16.75 ? O6 LMG 402 J 1 HETATM 13 C C7 LMG . . . Y 23 183.578 243.313 184.783 1 24.45 ? C7 LMG 402 J 1 HETATM 14 C C8 LMG . . . Y 23 183.126 244.723 185.328 1 21.12 ? C8 LMG 402 J 1 HETATM 15 C C9 LMG . . . Y 23 182.514 245.573 184.172 1 23.26 ? C9 LMG 402 J 1 HETATM 16 O O7 LMG . . . Y 23 182.029 244.521 186.224 1 24.39 ? O7 LMG 402 J 1 HETATM 17 C C10 LMG . . . Y 23 181.977 245.158 187.442 1 25.97 ? C10 LMG 402 J 1 HETATM 18 O O9 LMG . . . Y 23 182.971 245.13 188.139 1 30 ? O9 LMG 402 J 1 HETATM 19 C C11 LMG . . . Y 23 180.677 245.869 187.825 1 23.48 ? C11 LMG 402 J 1 HETATM 20 C C12 LMG . . . Y 23 179.381 245.224 187.259 1 21.34 ? C12 LMG 402 J 1 HETATM 21 C C13 LMG . . . Y 23 178.151 245.277 188.199 1 26.01 ? C13 LMG 402 J 1 HETATM 22 C C14 LMG . . . Y 23 178.46 244.978 189.701 1 28.31 ? C14 LMG 402 J 1 HETATM 23 C C15 LMG . . . Y 23 177.843 245.977 190.725 1 29.6 ? C15 LMG 402 J 1 HETATM 24 C C16 LMG . . . Y 23 176.779 246.959 190.158 1 28.66 ? C16 LMG 402 J 1 HETATM 25 C C17 LMG . . . Y 23 177.272 248.422 189.977 1 26.14 ? C17 LMG 402 J 1 HETATM 26 C C18 LMG . . . Y 23 176.206 249.395 189.408 1 29.99 ? C18 LMG 402 J 1 HETATM 27 C C19 LMG . . . Y 23 176.766 250.751 188.905 1 28.06 ? C19 LMG 402 J 1 HETATM 28 C C20 LMG . . . Y 23 176.928 250.878 187.364 1 27.24 ? C20 LMG 402 J 1 HETATM 29 C C21 LMG . . . Y 23 176.265 249.746 186.548 1 23.77 ? C21 LMG 402 J 1 HETATM 30 O O8 LMG . . . Y 23 181.76 246.64 184.737 1 26.17 ? O8 LMG 402 J 1 HETATM 31 C C28 LMG . . . Y 23 181.605 247.788 184.015 1 25.93 ? C28 LMG 402 J 1 HETATM 32 O O10 LMG . . . Y 23 181.093 247.733 182.911 1 27.93 ? O10 LMG 402 J 1 HETATM 33 C C29 LMG . . . Y 23 182.093 249.071 184.666 1 21.8 ? C29 LMG 402 J 1 HETATM 34 C C30 LMG . . . Y 23 181.048 250.197 184.667 1 21.82 ? C30 LMG 402 J 1 HETATM 35 C C31 LMG . . . Y 23 180.463 250.578 186.054 1 26.9 ? C31 LMG 402 J 1 HETATM 36 C C32 LMG . . . Y 23 181.033 249.807 187.262 1 22.24 ? C32 LMG 402 J 1 HETATM 37 C C33 LMG . . . Y 23 182.091 250.561 188.097 1 22.96 ? C33 LMG 402 J 1 HETATM 38 C C34 LMG . . . Y 23 181.691 252.027 188.351 1 20.14 ? C34 LMG 402 J 1 HETATM 39 C C35 LMG . . . Y 23 180.959 252.265 189.68 1 24.86 ? C35 LMG 402 J 1 HETATM 40 C C36 LMG . . . Y 23 180.977 253.747 190.086 1 27.33 ? C36 LMG 402 J 1 HETATM 41 C C37 LMG . . . Y 23 180.811 253.979 191.599 1 23.84 ? C37 LMG 402 J 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 138 _model_server_stats.query_time_ms 461 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 41 #