data_8XKS
#
_model_server_result.job_id            5kIGr8U1WVB9qWNr_ca5ag 
_model_server_result.datetime_utc      '2024-12-27 15:32:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xks 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":701}' 
#
_entry.id    8XKS 
#
_exptl.entry_id    8XKS 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              625.018 
_entity.id                          21 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIACYL GLYCEROL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      21 
_struct_asym.id                             W 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 P SG CYS 200 P CYS 136 1_555 P SG CYS 253 P CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
covale ? covale1 R C ASP 71 R ASP 43 1_555 R N SEP 72 R SEP 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 R C SEP 72 R SEP 44 1_555 R N LEU 73 R LEU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
metalc ? metalc1 C SG CYS 58 C CYS 58 1_555 U ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc2 C SG CYS 61 C CYS 61 1_555 U ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc3 C SG CYS 69 C CYS 69 1_555 V ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc4 C SG CYS 72 C CYS 72 1_555 V ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc5 C SG CYS 113 C CYS 113 1_555 V ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc6 C SG CYS 116 C CYS 116 1_555 V ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc7 C SG CYS 306 C CYS 306 1_555 U ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc8 C SG CYS 309 C CYS 309 1_555 U ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
#
_chem_comp.formula           'C39 H76 O5' 
_chem_comp.formula_weight    625.018 
_chem_comp.id                DGA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIACYL GLYCEROL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CA1 CA2 DGA sing 136 n n 
CA1 OA1 DGA doub 137 n n 
CA1 OG1 DGA sing 138 n n 
CA2 CA3 DGA sing 139 n n 
CA2 HA21 DGA sing 140 n n 
CA2 HA22 DGA sing 141 n n 
CA3 CA4 DGA sing 142 n n 
CA3 HA31 DGA sing 143 n n 
CA3 HA32 DGA sing 144 n n 
CA4 CA5 DGA sing 145 n n 
CA4 HA41 DGA sing 146 n n 
CA4 HA42 DGA sing 147 n n 
CA5 CA6 DGA sing 148 n n 
CA5 HA51 DGA sing 149 n n 
CA5 HA52 DGA sing 150 n n 
CA6 CA7 DGA sing 151 n n 
CA6 HA61 DGA sing 152 n n 
CA6 HA62 DGA sing 153 n n 
CA7 CA8 DGA sing 154 n n 
CA7 HA71 DGA sing 155 n n 
CA7 HA72 DGA sing 156 n n 
CA8 CA9 DGA sing 157 n n 
CA8 HA81 DGA sing 158 n n 
CA8 HA82 DGA sing 159 n n 
CA9 CAA DGA sing 160 n n 
CA9 HA91 DGA sing 161 n n 
CA9 HA92 DGA sing 162 n n 
CAA CBA DGA sing 163 n n 
CAA HAT1 DGA sing 164 n n 
CAA HAT2 DGA sing 165 n n 
CBA CCA DGA sing 166 n n 
CBA HAE1 DGA sing 167 n n 
CBA HAE2 DGA sing 168 n n 
CCA CDA DGA sing 169 n n 
CCA HAW1 DGA sing 170 n n 
CCA HAW2 DGA sing 171 n n 
CDA CEA DGA sing 172 n n 
CDA HAH1 DGA sing 173 n n 
CDA HAH2 DGA sing 174 n n 
CEA CFA DGA sing 175 n n 
CEA HAF1 DGA sing 176 n n 
CEA HAF2 DGA sing 177 n n 
CFA CGA DGA sing 178 n n 
CFA HAN1 DGA sing 179 n n 
CFA HAN2 DGA sing 180 n n 
CGA CHA DGA sing 181 n n 
CGA HAS1 DGA sing 182 n n 
CGA HAS2 DGA sing 183 n n 
CHA CIA DGA sing 184 n n 
CHA HAV1 DGA sing 185 n n 
CHA HAV2 DGA sing 186 n n 
CIA HAG1 DGA sing 187 n n 
CIA HAG2 DGA sing 188 n n 
CIA HAG3 DGA sing 189 n n 
CB1 CB2 DGA sing 190 n n 
CB1 OB1 DGA doub 191 n n 
CB1 OG2 DGA sing 192 n n 
CB2 CB3 DGA sing 193 n n 
CB2 HB21 DGA sing 194 n n 
CB2 HB22 DGA sing 195 n n 
CB3 CB4 DGA sing 196 n n 
CB3 HB31 DGA sing 197 n n 
CB3 HB32 DGA sing 198 n n 
CB4 CB5 DGA sing 199 n n 
CB4 HB41 DGA sing 200 n n 
CB4 HB42 DGA sing 201 n n 
CB5 CB6 DGA sing 202 n n 
CB5 HB51 DGA sing 203 n n 
CB5 HB52 DGA sing 204 n n 
CB6 CB7 DGA sing 205 n n 
CB6 HB61 DGA sing 206 n n 
CB6 HB62 DGA sing 207 n n 
CB7 CB8 DGA sing 208 n n 
CB7 HB71 DGA sing 209 n n 
CB7 HB72 DGA sing 210 n n 
CB8 CB9 DGA sing 211 n n 
CB8 HB81 DGA sing 212 n n 
CB8 HB82 DGA sing 213 n n 
CB9 CAB DGA sing 214 n n 
CB9 HB91 DGA sing 215 n n 
CB9 HB92 DGA sing 216 n n 
CAB CBB DGA sing 217 n n 
CAB HBT1 DGA sing 218 n n 
CAB HBT2 DGA sing 219 n n 
CBB CCB DGA sing 220 n n 
CBB HBE1 DGA sing 221 n n 
CBB HBE2 DGA sing 222 n n 
CCB CDB DGA sing 223 n n 
CCB HBW1 DGA sing 224 n n 
CCB HBW2 DGA sing 225 n n 
CDB CEB DGA sing 226 n n 
CDB HBH1 DGA sing 227 n n 
CDB HBH2 DGA sing 228 n n 
CEB CFB DGA sing 229 n n 
CEB HBF1 DGA sing 230 n n 
CEB HBF2 DGA sing 231 n n 
CFB CGB DGA sing 232 n n 
CFB HBN1 DGA sing 233 n n 
CFB HBN2 DGA sing 234 n n 
CGB CHB DGA sing 235 n n 
CGB HBS1 DGA sing 236 n n 
CGB HBS2 DGA sing 237 n n 
CHB CIB DGA sing 238 n n 
CHB HBV1 DGA sing 239 n n 
CHB HBV2 DGA sing 240 n n 
CIB HBG1 DGA sing 241 n n 
CIB HBG2 DGA sing 242 n n 
CIB HBG3 DGA sing 243 n n 
OG1 CG1 DGA sing 244 n n 
CG1 CG2 DGA sing 245 n n 
CG1 HG11 DGA sing 246 n n 
CG1 HG12 DGA sing 247 n n 
CG2 OG2 DGA sing 248 n n 
CG2 CG3 DGA sing 249 n n 
CG2 HG2 DGA sing 250 n n 
CG3 OXT DGA sing 251 n n 
CG3 HG31 DGA sing 252 n n 
CG3 HG32 DGA sing 253 n n 
OXT HXT DGA sing 254 n n 
#
_atom_sites.entry_id                     8XKS 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 20 ZN C 1 501 501 ZN ZN . 
V 20 ZN C 1 502 502 ZN ZN . 
W 21 DGA H 1 701 701 DGA DGA . 
X 22 DGD J 1 401 401 DGD DGD . 
Y 23 LMG J 1 402 402 LMG LMG . 
Z 24 ACD K 1 501 501 ACD ACD . 
AA 23 LMG L 1 301 403 LMG LMG . 
BA 22 DGD L 1 302 301 DGD DGD . 
CA 25 SQD L 1 303 302 SQD SQD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CA1 DGA . . . W 21 259.931 290.529 248.653 1 64.53 ? CA1 DGA 701 H 1 
HETATM 2 C CA2 DGA . . . W 21 258.817 291.16 247.842 1 56.05 ? CA2 DGA 701 H 1 
HETATM 3 C CA3 DGA . . . W 21 258.535 290.461 246.499 1 55.6 ? CA3 DGA 701 H 1 
HETATM 4 C CA4 DGA . . . W 21 257.587 289.249 246.699 1 54.87 ? CA4 DGA 701 H 1 
HETATM 5 C CA5 DGA . . . W 21 257.494 288.339 245.471 1 59.31 ? CA5 DGA 701 H 1 
HETATM 6 C CA6 DGA . . . W 21 256.652 287.105 245.643 1 58.61 ? CA6 DGA 701 H 1 
HETATM 7 C CA7 DGA . . . W 21 256.483 286.455 244.276 1 57.57 ? CA7 DGA 701 H 1 
HETATM 8 C CA8 DGA . . . W 21 257.516 285.351 244.065 1 62.17 ? CA8 DGA 701 H 1 
HETATM 9 C CA9 DGA . . . W 21 257.282 284.601 242.763 1 63.49 ? CA9 DGA 701 H 1 
HETATM 10 C CAA DGA . . . W 21 258.05 285.247 241.627 1 60.61 ? CAA DGA 701 H 1 
HETATM 11 O OA1 DGA . . . W 21 260.262 289.356 248.63 1 65.12 ? OA1 DGA 701 H 1 
HETATM 12 C CB1 DGA . . . W 21 263.403 293.397 252.117 1 65.87 ? CB1 DGA 701 H 1 
HETATM 13 C CB2 DGA . . . W 21 264.138 294.218 251.088 1 60.12 ? CB2 DGA 701 H 1 
HETATM 14 C CB3 DGA . . . W 21 263.463 295.541 250.717 1 61.72 ? CB3 DGA 701 H 1 
HETATM 15 C CB4 DGA . . . W 21 263.04 295.627 249.243 1 60.8 ? CB4 DGA 701 H 1 
HETATM 16 C CB5 DGA . . . W 21 261.612 296.178 249.088 1 58.98 ? CB5 DGA 701 H 1 
HETATM 17 C CB6 DGA . . . W 21 260.814 295.5 247.963 1 58.71 ? CB6 DGA 701 H 1 
HETATM 18 C CB7 DGA . . . W 21 260.286 296.485 246.91 1 63.32 ? CB7 DGA 701 H 1 
HETATM 19 C CB8 DGA . . . W 21 259.325 295.84 245.906 1 60.93 ? CB8 DGA 701 H 1 
HETATM 20 C CB9 DGA . . . W 21 257.845 296.07 246.261 1 62 ? CB9 DGA 701 H 1 
HETATM 21 C CAB DGA . . . W 21 256.867 295.775 245.104 1 63.28 ? CAB DGA 701 H 1 
HETATM 22 C CBB DGA . . . W 21 257.388 294.721 244.106 1 59.27 ? CBB DGA 701 H 1 
HETATM 23 C CCB DGA . . . W 21 256.381 293.592 243.853 1 59.59 ? CCB DGA 701 H 1 
HETATM 24 C CDB DGA . . . W 21 254.943 294.107 243.694 1 54.98 ? CDB DGA 701 H 1 
HETATM 25 C CEB DGA . . . W 21 254.091 293.186 242.818 1 55.68 ? CEB DGA 701 H 1 
HETATM 26 C CFB DGA . . . W 21 253.76 293.796 241.454 1 63.54 ? CFB DGA 701 H 1 
HETATM 27 C CGB DGA . . . W 21 253.548 292.705 240.398 1 60.08 ? CGB DGA 701 H 1 
HETATM 28 C CHB DGA . . . W 21 253.317 293.279 239.001 1 52.86 ? CHB DGA 701 H 1 
HETATM 29 C CIB DGA . . . W 21 252.259 294.37 239.006 1 56.17 ? CIB DGA 701 H 1 
HETATM 30 O OB1 DGA . . . W 21 263.722 293.327 253.291 1 64.25 ? OB1 DGA 701 H 1 
HETATM 31 O OG1 DGA . . . W 21 260.589 291.393 249.474 1 60.9 ? OG1 DGA 701 H 1 
HETATM 32 C CG1 DGA . . . W 21 260.914 290.992 250.792 1 51.06 ? CG1 DGA 701 H 1 
HETATM 33 C CG2 DGA . . . W 21 262.378 291.383 251.143 1 56.98 ? CG2 DGA 701 H 1 
HETATM 34 O OG2 DGA . . . W 21 262.307 292.723 251.638 1 67.96 ? OG2 DGA 701 H 1 
HETATM 35 C CG3 DGA . . . W 21 262.898 290.385 252.208 1 60.13 ? CG3 DGA 701 H 1 
HETATM 36 O OXT DGA . . . W 21 262.208 290.731 253.375 1 62.74 ? OXT DGA 701 H 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    98 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           36 
#