data_8XKU
#
_model_server_result.job_id            wN5mB3T5KM0V96-iKleQUw 
_model_server_result.datetime_utc      '2024-10-18 16:28:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xku 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":1103}' 
#
_entry.id    8XKU 
#
_exptl.entry_id    8XKU 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          18 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8XKU 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8XKU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptadecameric 
_pdbx_struct_assembly.oligomeric_count      17 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 18 S N N 
? 18 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 363 A THR 363 1_555 R MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc2 R MG MG . A MG 901 1_555 S O2B ATP . A ATP 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc3 B OD1 ASP 591 B ASP 591 1_555 T MG MG . B MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? 
metalc ? metalc4 B NE2 HIS 769 B HIS 769 1_555 U ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc5 B ND1 HIS 773 B HIS 773 1_555 U ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc6 B NE2 HIS 773 B HIS 773 1_555 U ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc7 T MG MG . B MG 1101 1_555 V O2G ATP . B ATP 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc8 T MG MG . B MG 1101 1_555 V O2B ATP . B ATP 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? 
metalc ? metalc9 Q SG CYS 102 R CYS 102 1_555 X ZN ZN . R ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc10 Q SG CYS 110 R CYS 110 1_555 Y ZN ZN . R ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc11 Q SG CYS 113 R CYS 113 1_555 Y ZN ZN . R ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc12 Q SG CYS 168 R CYS 168 1_555 Y ZN ZN . R ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc13 Q SG CYS 171 R CYS 171 1_555 Y ZN ZN . R ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc14 Q SG CYS 179 R CYS 179 1_555 X ZN ZN . R ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc15 Q SG CYS 182 R CYS 182 1_555 X ZN ZN . R ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8XKU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
R 17 MG A 1 901 901 MG MG . 
S 18 ATP A 1 902 902 ATP ATP . 
T 17 MG B 1 1101 903 MG MG . 
U 19 ZN B 1 1102 1101 ZN ZN . 
V 18 ATP B 1 1103 1102 ATP ATP . 
W 20 PX2 B 1 1104 401 PX2 PX2 . 
X 19 ZN R 1 400 400 ZN ZN . 
Y 19 ZN R 1 401 401 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . V 18 199.68 150.819 218.274 1 52.75 ? PG ATP 1103 B 1 
HETATM 2 O O1G ATP . . . V 18 199.874 150.157 219.606 1 52.75 ? O1G ATP 1103 B 1 
HETATM 3 O O2G ATP . . . V 18 200.642 150.38 217.208 1 52.75 -1 O2G ATP 1103 B 1 
HETATM 4 O O3G ATP . . . V 18 199.44 152.3 218.329 1 52.75 ? O3G ATP 1103 B 1 
HETATM 5 P PB ATP . . . V 18 197.716 150.787 216.378 1 52.75 ? PB ATP 1103 B 1 
HETATM 6 O O1B ATP . . . V 18 196.537 151.673 216.631 1 52.75 -1 O1B ATP 1103 B 1 
HETATM 7 O O2B ATP . . . V 18 198.855 151.26 215.517 1 52.75 ? O2B ATP 1103 B 1 
HETATM 8 O O3B ATP . . . V 18 198.277 150.251 217.771 1 52.75 ? O3B ATP 1103 B 1 
HETATM 9 P PA ATP . . . V 18 196.866 149.431 214.171 1 52.75 ? PA ATP 1103 B 1 
HETATM 10 O O1A ATP . . . V 18 195.684 150.293 213.853 1 52.75 -1 O1A ATP 1103 B 1 
HETATM 11 O O2A ATP . . . V 18 198.17 149.62 213.45 1 52.75 ? O2A ATP 1103 B 1 
HETATM 12 O O3A ATP . . . V 18 197.118 149.463 215.743 1 52.75 ? O3A ATP 1103 B 1 
HETATM 13 O O5' ATP . . . V 18 196.461 147.909 213.979 1 52.75 ? O5' ATP 1103 B 1 
HETATM 14 C C5' ATP . . . V 18 196.59 147.411 212.673 1 52.75 ? C5' ATP 1103 B 1 
HETATM 15 C C4' ATP . . . V 18 195.941 146.037 212.558 1 52.75 ? C4' ATP 1103 B 1 
HETATM 16 O O4' ATP . . . V 18 194.667 146 213.197 1 52.75 ? O4' ATP 1103 B 1 
HETATM 17 C C3' ATP . . . V 18 195.738 145.629 211.12 1 52.75 ? C3' ATP 1103 B 1 
HETATM 18 O O3' ATP . . . V 18 196.586 144.541 210.783 1 52.75 ? O3' ATP 1103 B 1 
HETATM 19 C C2' ATP . . . V 18 194.297 145.227 211.002 1 52.75 ? C2' ATP 1103 B 1 
HETATM 20 O O2' ATP . . . V 18 194.214 143.899 210.503 1 52.75 ? O2' ATP 1103 B 1 
HETATM 21 C C1' ATP . . . V 18 193.685 145.357 212.387 1 52.75 ? C1' ATP 1103 B 1 
HETATM 22 N N9 ATP . . . V 18 192.474 146.198 212.41 1 52.75 ? N9 ATP 1103 B 1 
HETATM 23 C C8 ATP . . . V 18 192.224 147.114 213.353 1 52.75 ? C8 ATP 1103 B 1 
HETATM 24 N N7 ATP . . . V 18 191.052 147.735 213.133 1 52.75 ? N7 ATP 1103 B 1 
HETATM 25 C C5 ATP . . . V 18 190.534 147.207 212.028 1 52.75 ? C5 ATP 1103 B 1 
HETATM 26 C C6 ATP . . . V 18 189.316 147.416 211.262 1 52.75 ? C6 ATP 1103 B 1 
HETATM 27 N N6 ATP . . . V 18 188.467 148.356 211.702 1 52.75 ? N6 ATP 1103 B 1 
HETATM 28 N N1 ATP . . . V 18 189.117 146.676 210.162 1 52.75 ? N1 ATP 1103 B 1 
HETATM 29 C C2 ATP . . . V 18 190.011 145.754 209.776 1 52.75 ? C2 ATP 1103 B 1 
HETATM 30 N N3 ATP . . . V 18 191.149 145.514 210.44 1 52.75 ? N3 ATP 1103 B 1 
HETATM 31 C C4 ATP . . . V 18 191.454 146.185 211.561 1 52.75 ? C4 ATP 1103 B 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    75 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#