data_8XL0 # _model_server_result.job_id bm6gpjE4FeiJe8jvpC2Hmg _model_server_result.datetime_utc '2024-12-23 05:32:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8xl0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":2401}' # _entry.id 8XL0 # _exptl.entry_id 8XL0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 244.311 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOTIN _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8XL0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8XL0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 786 A LYS 786 1_555 G C11 BTN . A BTN 2401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? covale ? covale2 B NZ LYS 786 B LYS 786 1_555 H C11 BTN . B BTN 2401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale3 C NZ LYS 786 C LYS 786 1_555 I C11 BTN . C BTN 2401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? covale ? covale4 D NZ LYS 786 D LYS 786 1_555 J C11 BTN . D BTN 2401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale5 E NZ LYS 786 E LYS 786 1_555 K C11 BTN . E BTN 2401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTN _chem_comp.mon_nstd_flag . _chem_comp.name BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTN doub 70 n n C11 O12 BTN sing 71 n n C11 C10 BTN sing 72 n n O12 HO2 BTN sing 73 n n C10 C9 BTN sing 74 n n C10 H101 BTN sing 75 n n C10 H102 BTN sing 76 n n C9 C8 BTN sing 77 n n C9 H91 BTN sing 78 n n C9 H92 BTN sing 79 n n C8 C7 BTN sing 80 n n C8 H81 BTN sing 81 n n C8 H82 BTN sing 82 n n C7 C2 BTN sing 83 n n C7 H71 BTN sing 84 n n C7 H72 BTN sing 85 n n C2 S1 BTN sing 86 n n C2 C4 BTN sing 87 n n C2 H2 BTN sing 88 n n S1 C6 BTN sing 89 n n C6 C5 BTN sing 90 n n C6 H61 BTN sing 91 n n C6 H62 BTN sing 92 n n C5 N1 BTN sing 93 n n C5 C4 BTN sing 94 n n C5 H5 BTN sing 95 n n N1 C3 BTN sing 96 n n N1 HN1 BTN sing 97 n n C3 O3 BTN doub 98 n n C3 N2 BTN sing 99 n n N2 C4 BTN sing 100 n n N2 HN2 BTN sing 101 n n C4 H4 BTN sing 102 n n # _atom_sites.entry_id 8XL0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 BTN A 1 2401 2401 BTN BTN . H 2 BTN B 1 2401 2401 BTN BTN . I 2 BTN C 1 2401 2401 BTN BTN . J 2 BTN D 1 2401 2401 BTN BTN . K 2 BTN E 1 2401 2401 BTN BTN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTN . . . K 2 277.479 280.495 84.647 1 97.62 ? C11 BTN 2401 E 1 HETATM 2 O O11 BTN . . . K 2 276.773 281.524 84.568 1 97.62 ? O11 BTN 2401 E 1 HETATM 3 C C10 BTN . . . K 2 278.229 280.233 85.93 1 97.62 ? C10 BTN 2401 E 1 HETATM 4 C C9 BTN . . . K 2 278.331 278.73 86.161 1 97.62 ? C9 BTN 2401 E 1 HETATM 5 C C8 BTN . . . K 2 278.856 278.427 87.559 1 97.62 ? C8 BTN 2401 E 1 HETATM 6 C C7 BTN . . . K 2 278.896 276.924 87.814 1 97.62 ? C7 BTN 2401 E 1 HETATM 7 C C2 BTN . . . K 2 277.491 276.328 87.79 1 97.62 ? C2 BTN 2401 E 1 HETATM 8 S S1 BTN . . . K 2 276.584 276.894 89.193 1 97.62 ? S1 BTN 2401 E 1 HETATM 9 C C6 BTN . . . K 2 275.77 275.37 89.538 1 97.62 ? C6 BTN 2401 E 1 HETATM 10 C C5 BTN . . . K 2 276.465 274.253 88.774 1 97.62 ? C5 BTN 2401 E 1 HETATM 11 N N1 BTN . . . K 2 277.259 273.436 89.667 1 97.62 ? N1 BTN 2401 E 1 HETATM 12 C C3 BTN . . . K 2 278.546 273.472 89.346 1 97.62 ? C3 BTN 2401 E 1 HETATM 13 O O3 BTN . . . K 2 279.428 272.877 89.945 1 97.62 ? O3 BTN 2401 E 1 HETATM 14 N N2 BTN . . . K 2 278.741 274.244 88.286 1 97.62 ? N2 BTN 2401 E 1 HETATM 15 C C4 BTN . . . K 2 277.496 274.802 87.795 1 97.62 ? C4 BTN 2401 E 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 183 _model_server_stats.query_time_ms 377 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 15 #