data_8XL5
#
_model_server_result.job_id            TCMssZU9VTqw03qU9t2z6A 
_model_server_result.datetime_utc      '2024-11-28 05:39:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8xl5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":601}' 
#
_entry.id    8XL5 
#
_exptl.entry_id    8XL5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              823.597 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'propionyl Coenzyme A' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8XL5 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8XL5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    12-meric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 N N N 
? 4 P N N 
? 4 R N N 
? 4 T N N 
? 4 V N N 
? 4 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 694 A LYS 694 1_555 M C11 BTN . A BTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 C NZ LYS 694 C LYS 694 1_555 O C11 BTN . C BTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 E NZ LYS 694 E LYS 694 1_555 Q C11 BTN . E BTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale4 G NZ LYS 694 G LYS 694 1_555 S C11 BTN . G BTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 I NZ LYS 694 I LYS 694 1_555 U C11 BTN . I BTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale6 K NZ LYS 694 K LYS 694 1_555 W C11 BTN . K BTN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C24 H40 N7 O17 P3 S' 
_chem_comp.formula_weight    823.597 
_chem_comp.id                1VU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'propionyl Coenzyme A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 P 1VU doub 1 n n 
C C1 1VU sing 2 n n 
O9 P1 1VU doub 3 n n 
C13 O4 1VU sing 4 n n 
C13 C10 1VU sing 5 n n 
C12 C10 1VU sing 6 n n 
P O4 1VU sing 7 n n 
P O6 1VU sing 8 n n 
P O7 1VU sing 9 n n 
C11 C10 1VU sing 10 n n 
C1 C2 1VU sing 11 n n 
C10 C9 1VU sing 12 n n 
O7 P1 1VU sing 13 n n 
P1 O8 1VU sing 14 n n 
P1 O10 1VU sing 15 n n 
C2 S 1VU sing 16 n n 
C2 O 1VU doub 17 n n 
S C3 1VU sing 18 n n 
C9 O3 1VU sing 19 n n 
C9 C8 1VU sing 20 n n 
O10 C14 1VU sing 21 n n 
O2 C8 1VU doub 22 n n 
C8 N1 1VU sing 23 n n 
N C4 1VU sing 24 n n 
N C5 1VU sing 25 n n 
C14 C15 1VU sing 26 n n 
C6 C5 1VU sing 27 n n 
C6 C7 1VU sing 28 n n 
N1 C7 1VU sing 29 n n 
C4 C3 1VU sing 30 n n 
C5 O1 1VU doub 31 n n 
C23 C22 1VU sing 32 n n 
C23 C15 1VU sing 33 n n 
C23 O13 1VU sing 34 n n 
C17 N3 1VU doub 35 n y 
C17 N2 1VU sing 36 n y 
C22 O12 1VU sing 37 n n 
C22 C16 1VU sing 38 n n 
C15 O11 1VU sing 39 n n 
N3 C18 1VU sing 40 n y 
O14 P2 1VU doub 41 n n 
O15 P2 1VU sing 42 n n 
O11 C16 1VU sing 43 n n 
O13 P2 1VU sing 44 n n 
N2 C16 1VU sing 45 n n 
N2 C21 1VU sing 46 n y 
P2 O16 1VU sing 47 n n 
C18 C21 1VU doub 48 n y 
C18 C19 1VU sing 49 n y 
C21 N6 1VU sing 50 n y 
N4 C19 1VU sing 51 n n 
C19 N5 1VU doub 52 n y 
N6 C20 1VU doub 53 n y 
N5 C20 1VU sing 54 n y 
O15 H1 1VU sing 55 n n 
O16 H2 1VU sing 56 n n 
C23 H3 1VU sing 57 n n 
C22 H4 1VU sing 58 n n 
O12 H5 1VU sing 59 n n 
C16 H6 1VU sing 60 n n 
C20 H7 1VU sing 61 n n 
N4 H8 1VU sing 62 n n 
N4 H9 1VU sing 63 n n 
C17 H10 1VU sing 64 n n 
C15 H11 1VU sing 65 n n 
C14 H12 1VU sing 66 n n 
C14 H13 1VU sing 67 n n 
O8 H14 1VU sing 68 n n 
O6 H15 1VU sing 69 n n 
C13 H16 1VU sing 70 n n 
C13 H17 1VU sing 71 n n 
C11 H18 1VU sing 72 n n 
C11 H19 1VU sing 73 n n 
C11 H20 1VU sing 74 n n 
C12 H21 1VU sing 75 n n 
C12 H22 1VU sing 76 n n 
C12 H23 1VU sing 77 n n 
C9 H24 1VU sing 78 n n 
O3 H25 1VU sing 79 n n 
N1 H26 1VU sing 80 n n 
C7 H27 1VU sing 81 n n 
C7 H28 1VU sing 82 n n 
C6 H29 1VU sing 83 n n 
C6 H30 1VU sing 84 n n 
N H31 1VU sing 85 n n 
C4 H32 1VU sing 86 n n 
C4 H33 1VU sing 87 n n 
C3 H34 1VU sing 88 n n 
C3 H35 1VU sing 89 n n 
C1 H36 1VU sing 90 n n 
C1 H37 1VU sing 91 n n 
C H38 1VU sing 92 n n 
C H39 1VU sing 93 n n 
C H40 1VU sing 94 n n 
#
_atom_sites.entry_id                     8XL5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 BTN A 1 801 801 BTN BTN . 
N 4 1VU B 1 601 601 1VU 1VU . 
O 3 BTN C 1 801 801 BTN BTN . 
P 4 1VU D 1 601 601 1VU 1VU . 
Q 3 BTN E 1 801 801 BTN BTN . 
R 4 1VU F 1 601 601 1VU 1VU . 
S 3 BTN G 1 801 801 BTN BTN . 
T 4 1VU H 1 601 601 1VU 1VU . 
U 3 BTN I 1 801 801 BTN BTN . 
V 4 1VU J 1 601 601 1VU 1VU . 
W 3 BTN K 1 801 801 BTN BTN . 
X 4 1VU L 1 601 601 1VU 1VU . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O14 1VU . . . T 4 221.428 233.468 236.306 1 20 ? O14 1VU 601 H 1 
HETATM 2 P P2 1VU . . . T 4 222.74 232.722 236.152 1 20 ? P2 1VU 601 H 1 
HETATM 3 O O15 1VU . . . T 4 222.988 232.29 234.719 1 20 ? O15 1VU 601 H 1 
HETATM 4 O O16 1VU . . . T 4 222.859 231.566 237.127 1 20 ? O16 1VU 601 H 1 
HETATM 5 O O13 1VU . . . T 4 223.911 233.766 236.528 1 20 ? O13 1VU 601 H 1 
HETATM 6 C C23 1VU . . . T 4 225.168 233.096 236.515 1 20 ? C23 1VU 601 H 1 
HETATM 7 C C22 1VU . . . T 4 226.109 233.728 235.49 1 20 ? C22 1VU 601 H 1 
HETATM 8 O O12 1VU . . . T 4 225.436 234.129 234.316 1 20 ? O12 1VU 601 H 1 
HETATM 9 C C16 1VU . . . T 4 226.64 234.924 236.272 1 20 ? C16 1VU 601 H 1 
HETATM 10 N N2 1VU . . . T 4 227.958 235.373 235.841 1 20 ? N2 1VU 601 H 1 
HETATM 11 C C21 1VU . . . T 4 228.263 236.524 235.153 1 20 ? C21 1VU 601 H 1 
HETATM 12 N N6 1VU . . . T 4 227.418 237.479 234.734 1 20 ? N6 1VU 601 H 1 
HETATM 13 C C20 1VU . . . T 4 228.071 238.449 234.101 1 20 ? C20 1VU 601 H 1 
HETATM 14 N N5 1VU . . . T 4 229.382 238.568 233.855 1 20 ? N5 1VU 601 H 1 
HETATM 15 C C19 1VU . . . T 4 230.212 237.59 234.289 1 20 ? C19 1VU 601 H 1 
HETATM 16 N N4 1VU . . . T 4 231.515 237.702 234.048 1 20 ? N4 1VU 601 H 1 
HETATM 17 C C18 1VU . . . T 4 229.633 236.506 234.976 1 20 ? C18 1VU 601 H 1 
HETATM 18 N N3 1VU . . . T 4 230.179 235.363 235.542 1 20 ? N3 1VU 601 H 1 
HETATM 19 C C17 1VU . . . T 4 229.151 234.724 236.041 1 20 ? C17 1VU 601 H 1 
HETATM 20 O O11 1VU . . . T 4 226.728 234.505 237.615 1 20 ? O11 1VU 601 H 1 
HETATM 21 C C15 1VU . . . T 4 225.918 233.319 237.824 1 20 ? C15 1VU 601 H 1 
HETATM 22 C C14 1VU . . . T 4 226.811 232.179 238.246 1 20 ? C14 1VU 601 H 1 
HETATM 23 O O10 1VU . . . T 4 227.741 231.876 237.176 1 20 ? O10 1VU 601 H 1 
HETATM 24 P P1 1VU . . . T 4 228.179 230.349 236.95 1 20 ? P1 1VU 601 H 1 
HETATM 25 O O8 1VU . . . T 4 229.04 230.256 235.734 1 20 ? O8 1VU 601 H 1 
HETATM 26 O O9 1VU . . . T 4 226.973 229.472 237.032 1 20 ? O9 1VU 601 H 1 
HETATM 27 O O7 1VU . . . T 4 229.089 230.096 238.246 1 20 ? O7 1VU 601 H 1 
HETATM 28 P P 1VU . . . T 4 230.092 228.913 238.653 1 20 ? P 1VU 601 H 1 
HETATM 29 O O5 1VU . . . T 4 229.742 228.419 240.017 1 20 ? O5 1VU 601 H 1 
HETATM 30 O O6 1VU . . . T 4 230.175 227.932 237.53 1 20 ? O6 1VU 601 H 1 
HETATM 31 O O4 1VU . . . T 4 231.487 229.7 238.742 1 20 ? O4 1VU 601 H 1 
HETATM 32 C C13 1VU . . . T 4 232.505 229.459 237.731 1 20 ? C13 1VU 601 H 1 
HETATM 33 C C10 1VU . . . T 4 232.93 230.802 237.144 1 20 ? C10 1VU 601 H 1 
HETATM 34 C C11 1VU . . . T 4 231.685 231.649 236.867 1 20 ? C11 1VU 601 H 1 
HETATM 35 C C12 1VU . . . T 4 233.81 231.54 238.157 1 20 ? C12 1VU 601 H 1 
HETATM 36 C C9 1VU . . . T 4 233.71 230.601 235.841 1 20 ? C9 1VU 601 H 1 
HETATM 37 O O3 1VU . . . T 4 232.934 229.828 234.939 1 20 ? O3 1VU 601 H 1 
HETATM 38 C C8 1VU . . . T 4 234.076 231.929 235.201 1 20 ? C8 1VU 601 H 1 
HETATM 39 O O2 1VU . . . T 4 235.225 232.356 235.291 1 20 ? O2 1VU 601 H 1 
HETATM 40 N N1 1VU . . . T 4 233.113 232.577 234.56 1 20 ? N1 1VU 601 H 1 
HETATM 41 C C7 1VU . . . T 4 233.267 233.938 234.065 1 20 ? C7 1VU 601 H 1 
HETATM 42 C C6 1VU . . . T 4 234.462 234.083 233.148 1 20 ? C6 1VU 601 H 1 
HETATM 43 C C5 1VU . . . T 4 235.537 234.964 233.747 1 20 ? C5 1VU 601 H 1 
HETATM 44 O O1 1VU . . . T 4 235.854 234.861 234.93 1 20 ? O1 1VU 601 H 1 
HETATM 45 N N 1VU . . . T 4 236.119 235.852 232.934 1 20 ? N 1VU 601 H 1 
HETATM 46 C C4 1VU . . . T 4 236.399 237.228 233.318 1 20 ? C4 1VU 601 H 1 
HETATM 47 C C3 1VU . . . T 4 237.818 237.406 233.801 1 20 ? C3 1VU 601 H 1 
HETATM 48 S S 1VU . . . T 4 238.185 239.126 234.23 1 20 ? S 1VU 601 H 1 
HETATM 49 C C2 1VU . . . T 4 239.879 239.24 233.762 1 20 ? C2 1VU 601 H 1 
HETATM 50 O O 1VU . . . T 4 240.752 239.599 234.515 1 20 ? O 1VU 601 H 1 
HETATM 51 C C1 1VU . . . T 4 240.124 238.845 232.334 1 20 ? C1 1VU 601 H 1 
HETATM 52 C C 1VU . . . T 4 240.165 237.363 232.12 1 20 ? C 1VU 601 H 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    210 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           52 
#